ID DQ406672; SV 1; circular; genomic DNA; STD; VRL; 2578 BP. XX AC DQ406672; XX DT 13-MAR-2006 (Rel. 87, Created) DT 08-MAY-2018 (Rel. 136, Last updated, Version 2) XX DE Rhynchosia golden mosaic Sinaloa virus segment A, complete sequence. XX KW . XX OS Rhynchosia golden mosaic Sinaloa virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2578 RA Mauricio-Castillo J.A., Arguello-Astorga G.R., Mendez-Lozano J.; RT "Rhynchosia mosaic Sinaloa virus, a new begomovirus of the SLCV lineage"; RL Unpublished. XX RN [2] RP 1-2578 RA Mauricio-Castillo J.A., Arguello-Astorga G.R., Mendez-Lozano J.; RT ; RL Submitted (18-FEB-2006) to the INSDC. RL Molecular Biology, Instituto Potosino de Investigacion Cientifica y RL Tecnologica, Camino a la Presa San Jose 2055, San Luis Potosi, SLP 78231, RL Mexico XX DR MD5; 493520af1adf18be48b60bb51d8621ab. XX FH Key Location/Qualifiers FH FT source 1..2578 FT /organism="Rhynchosia golden mosaic Sinaloa virus" FT /segment="A" FT /host="Rhynchosia minima" FT /isolate="Sinaloa" FT /mol_type="genomic DNA" FT /country="Mexico:Los Mochis, Sinaloa" FT /collection_date="2004" FT /db_xref="taxon:1513519" FT gene 165..920 FT /gene="CP" FT CDS 165..920 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="capsid protein; encapsulates the viral genome; BV1; FT BR1" FT /db_xref="GOA:Q208C9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q208C9" FT /protein_id="ABD65392.1" FT /translation="MVKRDAPWRLSAGTSKVSRSTNYTPRAGMGPKFDKASAWVNRPMY FT RKPRIYRTLRSPDVPRGCEGPCKVQSFESRHDVTHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSISN" FT gene complement(917..1315) FT /gene="AC3" FT CDS complement(917..1315) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="rep-interacting protein; enhances function of Rep FT protein; AL3; REn" FT /db_xref="GOA:Q208C8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q208C8" FT /protein_id="ABD65396.1" FT /translation="MDSRTGESITAGQAESSVFIWEVPNPLFFKIHHVENPLFTRTRIY FT HIEVRFNHNLRRALGLHKAYFNFQVWTTSMRASGQRYLARFKLLVMSYLDSLGVIGINN FT VIRAVRFATNKHYVTDVLENHEIKFKIY" FT gene complement(1062..1451) FT /gene="AC2" FT CDS complement(1062..1451) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /note="TrAP; transcription activator; activation of late FT genes; silencing-suppressor; AL2" FT /db_xref="GOA:Q208C7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q208C7" FT /protein_id="ABD65395.1" FT /translation="MLNSSPLKPPSIKAQHRIAKRRAVRRRRIDLNCGCSIFLHINCAD FT NGFTHRGEHHCGSSREFRFYLGGSKSPLFQDTPRREPVIHKNQDISHRSPVQPQPTESV FT GSPQSLLQLPSLDDFDESFWAEIFS" FT gene complement(1393..2442) FT /gene="AC1, Rep" FT CDS complement(1393..2442) FT /codon_start=1 FT /gene="AC1, Rep" FT /product="replication initiator protein" FT /note="rolling-circle replication protein; initiator of FT virus replication via a RC mechanism" FT /db_xref="GOA:Q208C6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q208C6" FT /protein_id="ABD65393.1" FT /translation="MPRNPNSFRLQARNIFLTYPQCDISKDEALQLLQSLPWSVVKPTY FT IRVAREQHSDGFPHLHCLIQLSGESDIKNARFFDIAHPRRSTNFHPNIQAAKDTNAVQN FT YIAKDGDYCESGQYKVSGGSKANKDDVYHNAVNAASVQEALAIIKAGDPKTFIVSYHNI FT KSNIERLLQKAPEPWAPPFQLSSFTNVPDDIQAWVNDYFGRSSAARPERPISIIIEGGS FT RTGKTMWARALGPHNYLSGHLDFNSKVYSNDVEYNVIDDIAPQYLKLKHWKELIGAQKD FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYISFLNKEENASLKAWTVKNAQFVTLEAP FT LYQSTAQDC" FT gene complement(2001..2363) FT /gene="AC4" FT CDS complement(2001..2363) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="UniProtKB/TrEMBL:Q208C5" FT /protein_id="ABD65394.1" FT /translation="MRLFSCFSRCHGQSSNPHTYVSQESNIQTGSLIYTVSSNYQESPT FT SRMLDFSTSLTPEGLPIFTQTFRRPKTPMPSRITSPKMVIIVNPDNTKYLGVQKQIRTM FT STITQLMQQVCKRLSP" XX SQ Sequence 2578 BP; 667 A; 535 C; 623 G; 753 T; 0 other; accggatggc cgcgattttt tggaggatgc gtgggacccc gcaataaatg aaatttgaac 60 tgaccaatca cattgcgcct gactagccta gatatttgtg acttggcgac caagttgtgg 120 gcctataaaa cgacgtgaaa tttcatttat tgctttaatt caaaatggtt aagcgggatg 180 ccccatggcg cctatctgct gggacctcta aggtatcccg ctctaccaat tatacgcctc 240 gtgcaggcat gggcccaaaa tttgataagg cctctgcctg ggttaacagg cccatgtata 300 ggaagcccag gatatatcgg acgttgagaa gccccgatgt tccaagaggc tgtgaagggc 360 cttgtaaggt ccagtctttt gaatcaagac atgatgttac tcatgttggc aaggtgatgt 420 gcatttccga cgtgacacgt ggtaatggta ttacccatcg tgttggtaag cgtttctgcg 480 ttaagtccgt gtacattttg ggcaagatat ggatggacga gaatatcaag ctcaagaacc 540 acaccaacag cgtcatgttt tggttggtgc gagaccggag accctatggt acgcctatgg 600 attttggcca ggtattcaac atgttcgata acgaacccag tactgccact gtcaagaacg 660 atcttcgtga tcgttatcaa gtcatgcaca agttctacgc taaggtgact ggtggacagt 720 atgctagcaa cgagcaggcg ttggttaaac gcttttggaa ggtcaacaac tacgtcgtgt 780 acaaccatca ggaagcagct aaatacgaga atcatacgga gaacgctttg ttattgtata 840 tggcgtgtac tcatgcgtct aatcctgtgt atgcgacatt gaaaattcgg atctattttt 900 atgattcgat atcaaattaa taaattttga attttatttc atgattctcg agtacatcag 960 ttacataatg tttgttcgtc gcgaaacgaa cagctctaat tacattgttt attcctataa 1020 cgcctaagct atctaaataa gacataacaa gtaatttaaa tctagctaaa tatctctgcc 1080 cagaagctct catcgaagtc gtccagactt ggaagttgaa gtaggctttg tggagaccca 1140 acgctctccg taggttgtgg ttgaaccgga cttcgatgtg atatatcctg gttcttgtga 1200 ataacgggtt ctctacgtgg tgtatcttga aaaagagggg atttggaacc tcccaaataa 1260 aaacggaact ctctgcttga cccgcagtga tgctctcccc tgtgcgtgaa tccattgtct 1320 gcgcagttaa tgtgtaggaa tatagaacag ccacagttca agtctatgcg tcgtcgacga 1380 acagctctcc gtttagcaat cctgtgctgt gctttgatag aggggggctt caagggtgac 1440 gaattgagca tttttgaccg tccaagcttt tagtgatgca ttttcctctt tgttgaggaa 1500 agatatatag ctgctcccct ctcctggatt gcacagcacg attgacggta tgccaccttt 1560 aatttgaact ggctttccgt atttgcagtt tgattgccag tccttttggg cccctatgag 1620 ttctttccaa tgctttagct ttaagtattg cggagctatg tcatcaatga cgttatactc 1680 cacatcattt gaatagacct tggaattgaa gtcgaggtga ccactcaagt aattatgtgg 1740 gcctaaagca cgtgcccaca tcgtctttcc tgttctagaa ccaccttcaa ttatgatact 1800 aataggtcgt tctggccgcg cagcggaact ccgaccaaaa taatcattaa cccaagcttg 1860 aatgtcgtcc gggacgttag taaaggagga gagttgaaac ggaggagccc atggttccgg 1920 agccttttgc aagaggcgct cgatgttaga cttgatgtta tgataactaa cgataaatgt 1980 ttttggatca ccggctttta ttatggcgag agcctcttgc acacttgctg cattaactgc 2040 gttatggtag acatcgtcct tatttgcttt tgaaccccca gatactttgt attgtccgga 2100 ttcacaataa tcaccatctt tggcgatgta attctggacg gcattggtgt ctttggccgc 2160 ctgaatgttt gggtgaaaat tggtagacct tctggggtga gcgatgtcga aaaatctagc 2220 attcttgatg tcggactctc ctgatagttg gatgagacag tgtaaatgag ggaacccgtc 2280 tgaatgttgc tctcttgcga cacgtatgta tgtgggtttg acgactgacc atggcagcga 2340 ctgaagcaac tgaagagcct catctttgga tatgtcgcac tggggatatg ttaagaaaat 2400 gtttctggct tgtaaacgaa aggaattagg gtttcgtggc atttttgtaa ataagccgag 2460 gtactccagc ggagtcctcc agcaacttga gtgctatatg ctggaggatt ggaggactat 2520 atatactaaa aggctctagg gtactccagg ggcaaaagcg gccatccgta ataatatt 2578 //