ID AY618902; SV 1; circular; genomic DNA; STD; VRL; 2743 BP. XX AC AY618902; XX DT 03-OCT-2004 (Rel. 81, Created) DT 03-OCT-2004 (Rel. 81, Last updated, Version 1) XX DE Cowpea golden mosaic virus segment DNA-A, complete sequence. XX KW . XX OS Cowpea golden mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2743 RA Chakraborty S., Singh S.K., Singh A.K., Pandey P.K.; RT "Molecular characterization of begomoviruses causing yellow mosaic disease RT on cowpea (Vigna unguiculata) and hyacinth bean (Lablab purpureus)"; RL Unpublished. XX RN [2] RP 1-2743 RA Chakraborty S., Singh S.K., Singh A.K., Pandey P.K.; RT ; RL Submitted (06-MAY-2004) to the INSDC. RL Plant Virology Laboratory, Indian Institute of Vegetable Research, 1 RL Gandhinagar, PB. No. 5002, PO. BHU, Varanasi, UP 221 005, India XX DR MD5; 689cd54789a743699a5313163b2de75a. XX FH Key Location/Qualifiers FH FT source 1..2743 FT /organism="Cowpea golden mosaic virus" FT /segment="DNA-A" FT /host="Vigna unguiculata (cowpea)" FT /strain="Varanasi" FT /mol_type="genomic DNA" FT /country="India" FT /db_xref="taxon:69263" FT gene 156..497 FT /gene="AV2" FT CDS 156..497 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:Q5YA45" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:Q5YA45" FT /protein_id="AAU87292.1" FT /translation="MWDPLLNDFPNSLHGFRCMLAIKYLQHVQENYPSNSRGFMYLTGL FT IQVLRIRNHAKADLRYSLLYPDIECTEEIELRNPAPAPCICGRCPYQPEKKALDQPTHV FT EETSVLPTV" FT gene 316..1089 FT /gene="AV1" FT CDS 316..1089 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="responsible for encapsidation of viral DNA and FT insect transmission" FT /db_xref="GOA:Q5YA44" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q5YA44" FT /protein_id="AAU87293.1" FT /translation="MPKRTYDTAFSTPISNARRRLNFETPLLLPASAGGVPTNLKRRRW FT TNRPMWRKPRFYRLYRSPDVPRGCEGPCKVQSFEQRHDIAHTGKVICISDVTRGNGITH FT RLGKRFCIKSVYITGKVWMDENIKSKNHTNTVMFKLCRDRRPFGSPHGFGQVFNMYDNE FT PSTATVKNDLRDRYQVLRRFNATVTGGQYACKEQAMVNRFFKVNNYVVYNHQEAAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSILN" FT gene complement(1095..1487) FT /gene="AC3" FT CDS complement(1095..1487) FT /codon_start=1 FT /gene="AC3" FT /product="replicational enhancer protein" FT /db_xref="GOA:Q5YA43" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q5YA43" FT /protein_id="AAU87294.1" FT /translation="MDFRTGESITAAQLRNGVYIWEVQNPLSFKIMHHSPIQAGSRMIV FT TKLRIMFNHGLKKALGMHKCFLDLKIYHYMKATSGMILSIFRSQLFRFLNNLGVISLAN FT ILYFASEFLYVKLHLVEDVSFTHNVQ" FT gene complement(1225..1677) FT /gene="AC2" FT CDS complement(1225..1677) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /note="aids in transcription of viral sense ORFs" FT /db_xref="GOA:Q5YA42" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q5YA42" FT /protein_id="AAU87295.1" FT /translation="MKRPMLRLNSGLQRMRSSTPSRNHCSPPSIKVQHRVAKKKAIRRS FT RIDLKCGCSYYIHINCRNYGFSHRGEHHCSSTQEWRLYLGGAKSPLFQDHAPQSNSSRV FT QNDCHQATHNVQPRVEESTGDAQVLPGLEDLPLYEGDFWDDLIDLP" FT gene complement(1535..2623) FT /gene="AC1" FT CDS complement(1535..2623) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /note="DNA polymerase; responsible for viral replication" FT /db_xref="GOA:Q5YA41" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q5YA41" FT /protein_id="AAU87296.1" FT /translation="MPRDGRFAINARNYFLTYPKCPLTKEEALEQLLALSTPVNKKFIR FT ICRELHEDGQPYLHVLLQFEGKQQTRNQRFFDLYSRCRSAHYHPNIQAAKSCSDVKKYM FT EKDGNVLDHGTFQIDARSARGGNQSANDAYAEALNCGSKFKALLILKEKAPKDFILQFH FT NLNCNLSRIFSEPVQAYESPFTMESFNKVPSYISSWAERNVRDPAARPERPISIVIEGD FT SRTGKTMWARAIGPHNYLCGHLDLNDKTYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNVKYGKPTKIKGGIPTIFLCNPGPKSSYKEYLDEETNAALKQWASKNAEFYTLKEPL FT FSSVNQGSTQGRQEESNSTISN" FT gene complement(2173..2472) FT /gene="AC4" FT CDS complement(2173..2472) FT /codon_start=1 FT /gene="AC4" FT /product="viral protein" FT /note="may be involved in symptom expression" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q5YA40" FT /protein_id="AAU87297.1" FT /translation="MKMDSLISMFCFSSKGSNKRGTKGSSTSIPDADRHITIRTFRQLK FT AAQTLKNTWRKTETSLIMELSKSMPDQLEEVTNLPTTHTPRHSTVDRNLRPSLY" XX SQ Sequence 2743 BP; 740 A; 589 C; 603 G; 811 T; 0 other; acctgagtgc cccgcgaccg gtgtattggg gttgctttaa ctttaatgct tttttggtac 60 ccttatcttt agtcgttcaa tcaggagcgc tcctcagcgc tatgttaatt caaatttgaa 120 ttataaagca agtggacact ctgaacccac taacaatgtg ggatcctttg ttgaacgact 180 ttcccaattc attgcatgga ttccggtgca tgttggctat aaagtatttg cagcatgttc 240 aagagaatta tccatctaat tctcgtggtt ttatgtacct tacagggtta attcaggtat 300 tgcgcatccg gaatcatgcc aaagcggacc tacgatacag ccttctctac cccgatatcg 360 aatgcacgga ggagattgaa cttcgaaacc ccgctcctgc tccctgcatc tgcgggaggt 420 gtccctacca acctgaaaag aaggcgttgg accaaccgac ccatgtggag gaaacctcgg 480 ttttaccgac tgtataggtc ccctgatgtc cctcggggtt gcgagggacc atgtaaagtt 540 caatcatttg agcaaaggca tgatattgct cacacaggca aagtgatttg catatctgac 600 gtgactagag gtaatggaat tacacatcgt cttggcaaac gattttgcat caagtccgtg 660 tacattacgg gtaaggtttg gatggacgaa aacatcaagt ccaagaatca cacaaacact 720 gtgatgttta agctatgtcg tgacagacga ccatttggtt caccccatgg atttggtcaa 780 gtgttcaaca tgtatgataa cgaacctagt acagctactg tgaagaacga tctgcgtgat 840 cgttatcaag tcttgcgaag atttaatgcc actgttactg gtggccaata tgcttgtaag 900 gaacaagcca tggtgaatcg ttttttcaaa gttaacaatt atgttgttta caaccatcaa 960 gaagcagcga agtatgaaaa ccatactgag aacgcattat tattgtatat ggcatgtact 1020 catgcgtcaa atcctgtgta tgcaacgctt aaaattcgga tctattttta tgattcgata 1080 ttgaattaat aaagttattg aacattatgc gtaaagctta catcctccac caggtggagt 1140 tttacataca ggaattccga cgcgaaatat aaaatatttg ctaagctaat gacacctaaa 1200 ttatttagaa acctaaataa ttggctacgg aagatcgata agatcatccc agaagtcgcc 1260 ttcatataat ggtagatctt caagtccagg aagcacttgt gcatccccag tgctttcttc 1320 aacccgtggt tgaacattat gcgtagcttg gtgacaatca ttctggaccc tgcttgaatt 1380 ggactgtggt gcatgatctt gaaagagagg ggattttgca cctcccagat atagacgcca 1440 ttcctgagtt gagctgcagt gatgctctcc cctgtgcgaa aatccatagt tacggcagtt 1500 gatatggatg taatagctac acccacattt caagtcaatt cgagatcgtc gaattgcttt 1560 cttcttggcg accctgtgtt gaaccttgat tgacggagga gaacaatggt tccttgaggg 1620 tgtagaactc cgcattcttt gaagcccact gtttaagcgc agcattggtc tcttcatcca 1680 agtactcttt ataggaggac ttgggaccag ggttacacag aaagatggtg gggatacccc 1740 ctttaatttt agtgggcttc ccgtacttga cgttagactg ccagtctctt tgcgcgccca 1800 tgaattcttt gaaatgtttc aaataatgtg gatcaacgtc atcaatgacg ttgtaccatg 1860 cctcgttaga gtatgttttg tcgtttagat ccaaatggcc gcaaagataa ttatgaggac 1920 ctatggcacg tgcccacatg gttttacccg tgcgactatc tccctcaata acaatactaa 1980 taggtctctc cggccgcgca gcgggatccc tcacatttct ttcagcccat gaagaaatgt 2040 agctcggaac cttgttaaat gactccatcg taaaaggcga ctcatatgcc tggacaggct 2100 ctgagaaaat acgagacaaa ttacaattca aattatgaaa ttgtaaaata aaatccttag 2160 gagccttttc tttcaatata aggagggcct taaatttcga tccacagttg agtgcctcgg 2220 cgtatgcgtc gttggcagat tggttacctc ctcgagctga tcgggcatcg atttggaaag 2280 ttccatgatc aaggacgttt ccgtctttct ccatgtattt tttaacgtct gagcagcttt 2340 tagctgcctg aatgttcgga tggtaatgtg ccgatctgca tctggaatag aggtcgaaga 2400 acctttggtt cctcgtttgt tgcttccctt cgaactgaag cagaacatgg agataaggct 2460 gtccatcttc atgaagttct cgacagatgc gaatgaattt cttgttaaca ggtgttgaca 2520 atgcgagaag ctgttcaaga gcttcctcct ttgtaagagg acatttggga tatgtcaaga 2580 aatagtttct tgcgtttatt gcaaaacgac catcccttgg catatttgaa gtcgtttttg 2640 tatcggtgta caccgattgc ttctctaccc ccctatcggt gtatcggtgt actatatata 2700 ctagagctac taaaagccca taggggcact cagctataat att 2743 //