ID AY339619; SV 1; circular; genomic DNA; STD; VRL; 2609 BP. XX AC AY339619; XX DT 13-AUG-2003 (Rel. 76, Created) DT 02-APR-2004 (Rel. 79, Last updated, Version 2) XX DE Tomato chino La Paz virus - [Baja California Sur] segment A, complete DE sequence. XX KW . XX OS Tomato chino La Paz virus - [Baja California Sur] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2609 RA Holguin-Pena R.J., Vazquez-Juarez R., Rivera-Bustamante R.F.; RT "Tomato chino Baja California Sur geminivirus: Detection, distribution and RT relationship to other New World Begomovirus"; RL Unpublished. XX RN [2] RP 1-2609 RA Holguin-Pena R.J., Vazquez-Juarez R., Rivera-Bustamante R.F.; RT ; RL Submitted (10-JUL-2003) to the INSDC. RL Biologia Molecular de Plantas, Centro De Investigaciones Biologicas del RL Noroeste, Mar Bermejo No. 195 Col. Playa Santa Rita, La Paz, Baja RL California Sur 23090, Mexico XX DR MD5; 32280ef95281d7b619022e120cb608e1. XX FH Key Location/Qualifiers FH FT source 1..2609 FT /organism="Tomato chino La Paz virus - [Baja California FT Sur]" FT /segment="A" FT /isolate="B-Czal" FT /mol_type="genomic DNA" FT /country="Mexico:Baja California, El Carrizal" FT /clone="d21-F2" FT /note="collected in March 2002" FT /db_xref="taxon:269300" FT gene 183..938 FT /gene="AR1" FT /note="synonym: AV1" FT CDS 183..938 FT /codon_start=1 FT /gene="AR1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:Q7T5U6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q7T5U6" FT /protein_id="AAQ21056.1" FT /translation="MPKRDAPWRLMSGTPKVSRSSNYVPPDGLGRKFDKSSAWANRPMY FT RKPRIYRTVRSADVPRGCEGPCKIQSFEQRHDISHTGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPSGTAMDFGHLFNMFDNEPSTATV FT KNDLRDRFQVLHRFHAKVTGGQYASNEQTLVKRFWRVNHRVTYNNQEAARYENHTENAL FT MLYMACTHASNPVYATLKIRIYFYDSVLN" FT gene complement(935..1333) FT /gene="AL3" FT /note="synonym: AC3" FT CDS complement(935..1333) FT /codon_start=1 FT /gene="AL3" FT /product="replication enhancer protein" FT /note="Ren" FT /db_xref="GOA:Q7T5U3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q7T5U3" FT /protein_id="AAQ21059.1" FT /translation="MDSRTGESITADQAENSVFIWEVPNPLYFTIIDVEDPIYTNTRIY FT HIQIRFNHNLRKALNLHKAYLNYQIWTTSVRASGTNYLSRFKYLVLLYLDRLGVICINN FT VIRAVRFATDKSYVNHVLENHSIKFKIY" FT gene complement(1080..1466) FT /gene="AL2" FT /note="synonym: AC2" FT CDS complement(1080..1466) FT /codon_start=1 FT /gene="AL2" FT /product="transcription activator protein" FT /note="TrAP protein" FT /db_xref="GOA:Q7T5U4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q7T5U4" FT /protein_id="AAQ21058.1" FT /translation="MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANH FT GFSHRGEHHCGSGREFRFYLGGSKSPIFHDNRCRGPNLHEHQDIPHPNTVQPQPEEGVE FT STQSIPQLPNLDDISSSFWDELLK" FT gene complement(1423..2466) FT /gene="AL1" FT /note="synonym: AC1" FT CDS complement(1423..2466) FT /codon_start=1 FT /gene="AL1" FT /product="replication protein" FT /note="Rep" FT /db_xref="GOA:Q7T5U5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q7T5U5" FT /protein_id="AAQ21057.1" FT /translation="MPLVPKKFIINSKNYFLTYPHCSLTKEETLEQLLRLSTPTNKKYI FT KIARELHEDGEYHLHVLIQFEGKFKTQNCRFFDLVSSTRSTHFHPNVQGAKSSTDVKSY FT VDKDGDTIEWGEFQIDGRSARGGQQTANDAAAEALNASSKEEAMRIIKEKLPKEFLFQY FT HNLSSNLDRIFAKAPEPWVPPFPISSFTNVPDEMQEWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGPHNYLSGHLDFNPRVYSNDVEYNVIDDVTPQYLKMKHWKELIGA FT QKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKCSLEKEENAALKDWTLHNAKFIFL FT NSTLYQA" FT gene complement(2049..2306) FT /gene="AL4" FT /note="synonym: AC4" FT CDS complement(2049..2306) FT /codon_start=1 FT /gene="AL4" FT /product="AL4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q7T5U2" FT /protein_id="AAQ21060.1" FT /translation="MGNIISTCLSSSKANSKRKIADSSTWYPQLGQHISIRTFRELSQA FT PTSSPMSTRMEIQSNGENSRSTADLLEEVSKQLTTLPQRP" XX SQ Sequence 2609 BP; 651 A; 541 C; 603 G; 814 T; 0 other; accggatggc cgcgcctttt tgacccggcc caattctgga aatttcgttg ggccttcctg 60 gataaagtta gccaatcagc gcacgagtgt gtagtctaat tattaacaac ttggcgacca 120 agttgttttg tggtctataa atttgtcgtt atgtgtgtgg tccagatata tagattttga 180 aaatgcctaa gcgggatgcc ccatggcgtt taatgtcggg tacccctaag gttagtcgat 240 cctcaaatta tgtccctcct gatggattgg gccgtaaatt tgataagtcg tctgcctggg 300 ctaacaggcc catgtacaga aagcccagga tatatcggac cgtaaggtct gccgatgttc 360 ctcgaggctg tgaagggcct tgcaagattc agtcgtttga gcagcgtcac gatatctctc 420 acacagggaa ggtgatgtgt atctccgatg ttactcgagg caatggcatt acccatcggg 480 ttggtaaacg tttctgcgtt aagtccgtgt atatattagg gaaggtttgg atggacgata 540 acatcaagct gaagaaccac actaacagcg ttatgttctg gttagttagg gataggaggc 600 ccagcggaac ggctatggat tttggtcacc tctttaacat gtttgacaat gagcctagta 660 ccgccactgt gaagaacgat cttcgagatc gtttccaagt gctgcacagg tttcatgcga 720 aggtgactgg tggtcagtat gctagtaatg agcagacgtt ggtgaagcgt ttttggcggg 780 tgaatcatcg tgtaacatat aataatcagg aggcggctcg gtatgagaac cataccgaga 840 acgccttaat gttgtacatg gcatgtactc atgcctctaa ccctgtgtat gctactctta 900 agatccggat ctacttttat gattcggtat taaattaata aattttgaat tttattgaat 960 gattttcaag tacatgattt acatacgatt tatctgttgc gaagcgaaca gctctaatta 1020 cattattaat acaaataacg cctaacctat ctaaatacaa taagactaaa tatttaaacc 1080 tacttaagta attcgtccca gaagctcgaa ctgatgtcgt ccagatttgg tagttgaggt 1140 atgctttgtg tagattcaac gccttcctca ggttgtggtt gaaccgtatt tggatgtggt 1200 atatcctggt gttcgtgtag attgggtcct ctacatcgat tatcgtgaaa tataggggat 1260 ttggaacctc ccagataaaa acggaattct ctgcctgatc cgcagtgatg ctctcccctg 1320 tgcgagaatc catggttggc acaatcgatg tgttggtaga atgagcagcc acagtttagg 1380 tctattctct tgcgacgaat cctagatttt gcaatcttgt gcttaggctt gatagagggt 1440 ggagttgagg aagatgaatt ttgcattgtg gagtgtccag tcttttagtg ctgcattttc 1500 ctctttttca agggaacatt tatagctggc tccctctcct ggattgcata gcacgattga 1560 tggtatccca cctttaattt gaactggctt tccgtatttg cagttggact gccagtcctt 1620 ttgggcccca atcagctctt tccaatgttt catctttaaa tattgtggag ttacgtcatc 1680 aatgacgttg tactccacat catttgagta aaccctagga ttgaaatcca agtgtccact 1740 caaataatta tgtggtccta aagcacgagc ccacattgtc tttccggtcc tcgaatcacc 1800 ctcgatgatt atactaatag gtctctccgg ccgcgcagcg gcacccctac caaaataatc 1860 atcagcccat tcttgcatct catccggaac gttcgtgaag gaagagattg gaaacggagg 1920 aacccatggt tccggagcct ttgcgaatat cctgtctagg ttactagaca ggttgtgata 1980 ctgaaaaaga aactcttttg ggagcttctc tttaataatc cgcattgcct cttccttcga 2040 ggaggcattt agggcctctg cggcagcgtc gttagctgtt tgctgacctc ctctagcaga 2100 tctgccgtcg atctggaatt ctccccattc gattgtatct ccatccttgt cgacatagga 2160 cttgacgtcg gtgcttgact tagctccctg aacgttcgga tggaaatgtg ttgacctagt 2220 tgaggatacc aggtcgaaga atcggcaatt ttgcgttttg aatttgcctt cgaactggat 2280 aagcacgtgg agatgatatt ccccatcttc gtgcaattct cttgcaattt tgatatattt 2340 tttattagtc ggggtgctca accgtaatag ttgctctagg gtttcttcct tggttaaaga 2400 acagtgtggg tatgttagaa aataattttt agaatttata ataaactttt ttggaactaa 2460 gggcattttt gtaaatatag taggtcgacc caattgagct ctcttcaaaa actctaagga 2520 attgggtata ctgggtcctt atttatacta gaaggtccta tagaactttc aatcgcatcc 2580 gctcacgtgg cggccatccg tataatatt 2609 //