ID AJ717554; SV 1; circular; genomic DNA; STD; VRL; 2802 BP. XX AC AJ717554; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 3) XX DE East African cassava mosaic virus segment DNA A, complete sequence, isolate DE EACMV-[K36] XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. XX OS East African cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2802 RA Bull S.E.; RT ; RL Submitted (19-MAY-2004) to the INSDC. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; 78902f7557c8bc0adbaa6d6025de5f63. XX FH Key Location/Qualifiers FH FT source 1..2802 FT /organism="East African cassava mosaic virus" FT /segment="DNA A" FT /host="Manihot esculenta" FT /isolate="EACMV-[K36]" FT /mol_type="genomic DNA" FT /country="Kenya:Kwale, Boundary" FT /clone="K36FA-23[2001]" FT /db_xref="taxon:62079" FT CDS 175..531 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q2A8Q2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2A8Q2" FT /protein_id="CAJ78166.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYPLHLEQEYDRGTVGAEYIRDL FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCP" FT CDS 335..1108 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:Q2A8Q1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q2A8Q1" FT /protein_id="CAJ78167.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGPGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1105..1509) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q2A8Q0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2A8Q0" FT /protein_id="CAJ78168.1" FT /translation="MDSRTGELITAPQAKNGVFTWEIINPLYFAITNHDKRPGNMNHDI FT ITLQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLKVFRYQVLKYLDMIGVISINT FT VLQAVDHVLYDVLLNTLQVTEQHAIKFNLY" FT CDS complement(1250..1657) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q2A8P9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2A8P9" FT /protein_id="CAJ78169.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEAREHEPRHHHTPDTVQPQ FT HPEGTGDSQVFSELQGLDDLTASDWSFLKSI" FT CDS complement(1566..2645) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:Q2A8P8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2A8P8" FT /protein_id="CAJ78170.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLKAFSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPQEIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEERNQSLKDWALKNATFVTLYEPL FT FSSAHQSPTPHSENQGTQT" FT CDS complement(2255..2488) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2A8P7" FT /protein_id="CAJ78171.1" FT /translation="MGCLISMFSSNSKASSNVPTPDSSISFPHPDQHISIRTSRALNHR FT PMSKLTLKREGNFLTMEFSKSMPEVPGGRANI" XX SQ Sequence 2802 BP; 728 A; 551 C; 733 G; 790 T; 0 other; accggatggc cgcgcccgaa aaagcatgtg gaccccacgg gattggccgc gcccgtgaaa 60 gaaagtggtc cccgcgcact agttgtggtc ggccagtcat attcacgcgt gaaagtctag 120 atatttgtgg tttgtcttta tagacttcgt cgcgaagtag tggagcgcgt caacatgtgg 180 gatccattgt tgaacgattt tcccgaaacc gttcacggtt tccgttctat gcttgctgtt 240 aaatacccgt tacatcttga acaggaatac gatcgcggta ctgtcggggc tgagtatata 300 cgggatctaa taggggttct acggtgtaag aattatgtcg aagcgaccag gagatataat 360 aatctcaaca cccgtatcca aggtgcggag gaggctgaac ttcgacagcc catacacgaa 420 ccgtgttgtt gcccccactg tccgcgtcac cagaagcaaa atatgggcca acaggcccat 480 gtatcggaag cccaagatgt acagaatgta tcgaagccca gatgtcccta agggctgtga 540 aggcccatgt aaggttcagt cctatgaaca gagggatgat gttaagcaca ctggtatggt 600 tcgatgtgtc agtgatgtta cccgtgggcc aggcattacc catagagtcg ggaagaggtt 660 ttgtgtgaag tccatatata tattgggcaa gatctggatg gatgagaata tcaagaagca 720 aaatcatacg aaccatgtta tgttcttcct ggttcgagat agaaggccgt atgggccgag 780 cccgcaagat tttggacaag tgttcaacat gtttgataat gaacctacta ctgcaactgt 840 gaagaatgat cttagggacc ggtatcaggt gttacgtaaa ttctatgcga ccgttgttgg 900 tggaccctct gggatgaagg aacaagctct ggttaagagg ttttttagga tcaataatca 960 tgtagtgtat aatcatcagg aacaggccaa gtatgagaat catactgaga atgcgttgtt 1020 attgtatatg gcatgtacac atgcctcaaa tcctgtgtat gctacgctga aaatacgtat 1080 ctatttctat gatgcagtga caaattaata aaggttgaat tttattgcat gttgctccgt 1140 aacttggagt gtgttgagta atacatcgta cagaacatga tcaacagctt gaagtacagt 1200 gttaatggaa ataacgccta tcatatctaa atacttgagc acttgatatc taaatacttt 1260 taagaaaaga ccagtcggag gccgtaaggt cgtccagacc ttgaagttca gaaaacactt 1320 gtgaatcccc agtgccttcc ggatgttgtg gttgaaccgt atctggagtg tgatgatgtc 1380 gtggttcatg ttccctggcc tcttgtcgtg gttggtgatt gcgaaataga ggggatttat 1440 tatttcccag gtaaaaacgc cattctttgc ttgaggcgca gtgatgagtt cccctgtgcg 1500 agaatccatg gttgatgcag tcgatatgga gatagaacga gcagccgcat tcgaggtcta 1560 cccgcctacg tctgagtgcc ctggttttcg ctgtgcggtg ttggactttg atgggcactt 1620 gagaacaatg gctcgtagag ggtgacgaag gtggcattct ttaaagccca gtctttaagg 1680 gactgattcc tttcctcttc cagaaactct ttatatgatg atgttggtcc tggattgcag 1740 aggaagatag tgggaatgcc gcctttaatt tgaattggct tcccgtactt tgtattgctt 1800 tgccagtccc tttgggcccc catgaattct ttgaagtgtt tgaggtagtg ggggtcgacg 1860 tcatcaatga cgttgtacca ggcgtcgttg gaatatatct ttggagacag atccaggtgt 1920 ccacacaaat aattatgtgg gcccagggaa cgagcccaca tggtcttccc ggttcggcta 1980 tcaccttcta gaacaatact gatcggtctc catggccgcg cagcgggact gcatatattt 2040 tcggataccc atacttctat ttcctgtggg acttgtgtaa aggaggatga taagaacgga 2100 ctaacgtaag tttggggcgg agcctggaag attcgatctg cgttagcaga tatgttatgg 2160 aactgtaaaa aaaaggactt tggatctttt tctttgataa tttgaagagc ttctgattta 2220 gaagaagcat tcaacgcgtc tgcatatacc tgagctaaat gttggccctc ccccctggca 2280 cttcgggcat cgacttggaa aattccatcg tcaagaaatt cccctccctt ttcaatgtaa 2340 gctttgacat cggacgatga tttagcgccc tggatgttcg gatggaaatg tgttgatcgg 2400 gatggggaaa tgagatcgaa gaatctgggg ttggtacatt ggaacttgcc ttcgaattgg 2460 atgagaacat ggagatgagg caccccatcc tgatgtagtt ctctgcaaac cctaatgaat 2520 ttgatatttg tcgggtaaga aaaggctttt aattgggaaa gggcctcttc ctttgttaat 2580 gagcatcggg gataggtgat gaaataattt ttggcattga tttgaaaacg accggctctt 2640 ggcatatttg ctgtcgtttt ggatcggggg acactcaaaa ctccagggga acggtggaat 2700 ggggggcatt atataggatg tcccccaatg gcatatgtgt aaataggtag agttccattc 2760 aaaatttgaa ttgcgaatat ttgcggccat ccgattaata tt 2802 //