ID AJ542540; SV 1; circular; genomic DNA; STD; VRL; 2784 BP. XX AC AJ542540; XX DT 05-FEB-2003 (Rel. 74, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Honeysuckle yellow vein virus-[UK1] complete genome, clone MAFF10-7 XX KW C1 gene; C2 gene; C2 protein; C3 gene; C3 protein; C4 gene; C4 protein; KW coat protein; complete genome; replication associated protein; V1 gene; KW V2 gene; V2 protein. XX OS Honeysuckle yellow vein virus-[UK1] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2784 RA Briddon R.W.; RT ; RL Submitted (05-FEB-2003) to the INSDC. RL Briddon R.W., Dept. of Disease and Stress Biology, John Innes Centre, RL Colney Lane, Norwich, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Briddon R.W.; RT "Diversity of begomoviruses asscociated with DNA beta"; RL Unpublished. XX DR MD5; e77c663dc114930216cdf5123ef6d778. XX FH Key Location/Qualifiers FH FT source 1..2784 FT /organism="Honeysuckle yellow vein virus-[UK1]" FT /host="Lonicera japonica var. aureo-reticulata" FT /mol_type="genomic DNA" FT /country="United Kingdom:Norfolk" FT /clone="MAFF10-7" FT /tissue_type="leaf" FT /db_xref="taxon:240866" FT CDS 159..509 FT /gene="V2" FT /product="V2 protein" FT /db_xref="GOA:Q80P74" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q80P74" FT /protein_id="CAD62697.1" FT /translation="MWDPLVNDFPETVHGFRCMLAVKYLLLVESTYAPDTVGYDLVRDL FT IGVVRAKNYVEASCRYRNFHTRLQGTAPSELRQPVCQPCECPHCPRHKQKEIMGSAAHV FT SEAQDVQNVQKS" FT CDS 319..1092 FT /gene="V1" FT /product="coat protein" FT /function="required for encapsidation and transmission to FT insect" FT /db_xref="GOA:Q80P73" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q80P73" FT /protein_id="CAD62698.1" FT /translation="MSKRPADIGIFTPVSKVRRRLNFDSPYVSRASAPIALVTNKRRSW FT AQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFETKNDVGHSGTLLCVSDITRGNGLTH FT RVGKRFCIKSVYIIGKIWMDDNIKTKNHTNNVLFWLVRDRRPGSTPYGFQEAFNMIQNE FT PSTATIKQELRDRLQVLHRFSATVTGGQYVSKEQAIIKRFWKLNHHVTYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRVYFYDSVQN" FT CDS complement(1089..1493) FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:Q80P72" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q80P72" FT /protein_id="CAD62699.1" FT /translation="MDSRTGDTITAAQARNGAYTWTVPNPLYFKITTHAQRPLNMDQDI FT ITLQIQFNHNLRNQLHIHKCFLSFKIWTRLHPQTLHFLRVFRTQVLKYLDNLGVISINN FT VIRAVDHVLYNVFEGTECVQQFTDIKFKLY" FT CDS complement(1234..1641) FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:Q80P71" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q80P71" FT /protein_id="CAD62700.1" FT /translation="MQPSSPSTAHSTQVPIKVRHRSEKRRAPRRRRIDLNCGCSIYVAL FT GCANHGFTHRGHHHCSSGKEWCVYLDSAQSPIFQNHDTRATATQHGSGYNNFTDTIQPQ FT PQESTAHTQVLPLFQDLDSLTSSDFAFLEGI" FT CDS complement(1541..2719) FT /gene="C1" FT /product="replication associated protein" FT /function="required for initiation of rolling-circle FT replication" FT /db_xref="GOA:Q80P70" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q80P70" FT /protein_id="CAD62701.1" FT /translation="MPCPPEYKLPPNAPPFSRSLKCPPIDQVNMPRAGRFSLKAKNYFL FT TYPQCSIDKEEALTQLQKLNTPTNIKFIRICRELHQNGSPHLHVLIQFEGKYNCTNQRF FT FDLVSPSRSAHFHPNIQAAKSSSDVKTYMEKDGDIVDFGVFQVDGRSARGGCQSATDAY FT AEAINSGSKSSALCILREKAPKDFVLQFHNLNSNLDRIFAPPLEEFVSPFLSSSFDQVP FT EQLEGWAAENVRDSAARPWRPISIVIEGDSRTGKTMWARSLSPRHNYLCGHLDLSPKVY FT SNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSS FT YTEYLDEDKNAALKAWAIKNAAFVTLYGPLYSGTHQGATQIREEESTSPEED" FT CDS complement(2182..2337) FT /gene="C4" FT /product="C4 protein" FT /db_xref="UniProtKB/TrEMBL:Q80P69" FT /protein_id="CAD62702.1" FT /translation="MSRPIWRKTETSLILECSRSMEDQLEEVASLPPTRMPRQSTQDLS FT HRHSVY" XX SQ Sequence 2784 BP; 713 A; 573 C; 662 G; 836 T; 0 other; accggatggc cgcccgaaat ttcgtggtgg tcccccccat gtcggccgtg gtccccccca 60 tgtcggccaa tgaataacgt gccttgaatg ttagataagt ggaaagtgac gtttgctttt 120 gtctttatat acgtcagccc taattttaac ggtgtaagat gtgggatcct ttagttaacg 180 atttccctga aaccgttcac ggttttaggt gtatgttagc ggttaagtac ctcctacttg 240 ttgaatctac gtacgctcca gatactgttg ggtacgatct tgtacgcgat cttattggag 300 ttgttcgagc taagaactat gtcgaagcgt cctgcagata taggaatttt cacacccgtc 360 tccaaggtac ggcgccgtct gaacttcgac agcccgtatg tcagccgtgc gagtgccccc 420 attgccctcg tcacaaacaa aaggagatca tgggctcagc ggcccatgta tcggaagccc 480 aggatgtaca gaatgtacag aagtcctgat gttcccaagg ggtgtgaagg tccgtgtaag 540 gtacagtcat ttgagacgaa gaatgatgtt gggcattctg gtactctgct ctgtgtttct 600 gatatcaccc gtggtaatgg acttactcat cgtgttggga agagattttg tataaaatct 660 gtttatatta ttggtaaaat ctggatggat gacaatatta agacgaagaa tcacactaac 720 aacgtgttat tctggttagt tagggataga cgtcctggtt caactcctta tggattccaa 780 gaggcattca atatgattca aaatgagccc agtacagcca ctattaaaca ggagttgaga 840 gatcgtttgc aggtgttaca taggttcagt gcgactgtta caggtggaca atatgtgtcc 900 aaggaacaag ctatcatcaa gaggttctgg aagttgaatc atcatgtcac ttacaatcat 960 caggagcaag ctaaatatga gaaccatact gaaaatgctt tgttattgta tatggcgtgt 1020 actcatgcca gtaatccagt gtatgccaca ttaaaaatca gagtgtattt ctacgattca 1080 gtacaaaatt aataaagctt aaattttata tctgtaaatt gttgtacaca ttcagttcct 1140 tcgaatacat tatataatac atgatctact gctctaatta cattgttaat tgatattaca 1200 cccaaattat ctaagtactt caacacttgt gtcctaaata ccctcaagaa atgcaaagtc 1260 tgaggatgta agcgagtcca aatcttgaaa gagaggaagc acttgtgtat gtgcagttga 1320 ttcctgaggt tgtggttgaa ttgtatctgt aaagttatta tatcctgatc catgttgagt 1380 ggccgttgcg cgtgtgtcgt gattttgaaa tataggggat tgggcactgt ccaggtatac 1440 gcaccattcc ttgcctgagc tgcagtgatg gtgtcccctg tgcgtgaatc catgatttgc 1500 acaccccaat gcgacgtaaa tagaacaccc gcagttcaga tcaatcctcc tccggcgagg 1560 tgctctcctc ttctctgatc tgtgtcgcac cttgatgggt acctgagtag agtgggccgt 1620 agagggtgac gaaggctgca tttttaattg cccaggcttt tagggcagca ttcttgtcct 1680 cgtctaaata ctcggtgtat gatgacgttg ggcctggatt gcagaggaag attgttggga 1740 tacctccttt aatttgaatt ggtttcccgt acttggtgtt gctttgccag tccctttggg 1800 cccccatgaa ctctttaaag tgctttagat agtggggatc cacgtcatca atgacgttgt 1860 accaggcctc gttgctgtaa accttggggc ttaagtcaag atggccgcaa aggtagttat 1920 gacgtggact caaagacctg gcccacatgg tcttccctgt cctgctatcc ccttctatca 1980 caatgctaat gggcctccat ggccgcgcag cggaatccct gacgttctcg gcagcccatc 2040 cctcaagttg ctctggaact tgatcaaatg aagaagataa aaaaggagaa acaaattcct 2100 ccaacggagg agcaaaaatc ctatctaaat tgctatttaa attatgaaat tgtaaaacaa 2160 aatctttggg agctttctcc cttaatatac agagtgccga tgacttagat cctgagttga 2220 ttgcctcggc atacgcgtcg gtggcagact ggcaacctcc tctagctgat cttccatcga 2280 cctggaacac tccaaaatca acgatgtctc cgtctttctc catataggtc ttgacatctg 2340 acgagctttt agccgcctga atgttgggat ggaaatgtgc tgacctgctt ggggatacta 2400 ggtcgaagaa tcgttgattt gtgcagttgt atttcccctc gaactggatg aggacgtgga 2460 gatgagggct cccattttga tgtagctctc tgcagatcct tatgaattta atgttagttg 2520 gtgtgtttaa tttttgtaat tgggttaggg cttcttcttt gtcgatggag cattgtgggt 2580 atgtgaggaa ataatttttg gcttttaaag agaaacgccc agctctaggc atgttgactt 2640 ggtcaattgg ggggcacttc aaactcctgc tgaatggggg ggcattgggg ggcaatttat 2700 attctggggg gcatggcatt attgtaatta cttcaatttt aaattcaaaa ttcaaattgg 2760 taaagcggcc atccgtataa tatt 2784 //