ID AJ515482; SV 1; linear; mRNA; STD; VRL; 7563 BP. XX AC AJ515482; XX DT 11-SEP-2003 (Rel. 77, Created) DT 19-SEP-2003 (Rel. 77, Last updated, Version 2) XX DE Barley yellow mosaic virus 1 gene for polyprotein 1, genomic RNA, isolate DE BRZ XX KW 1 gene; 6K1 protein; 6K2 protein; CI protein; coat protein; KW NIa-Pro protein; NIb protein; P3 protein; polyprotein 1; VPg protein. XX OS Barley yellow mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 1-7563 RA Adams M.J.; RT ; RL Submitted (07-NOV-2002) to the INSDC. RL Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research, RL Harpenden, Herts AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1099/vir.0.19347-0. RX PUBMED; 13679620. RA Kuehne T., Shi N., Proeseler G., Adams M., Kanyuka K.; RT "The ability of a bymovirus to overcome the rym4-mediated resistance in RT barley correlates with a codon change in the VPg coding region on RNA1."; RL J. Gen. Virol. 84(Pt 10):2853-2859(2003). XX DR MD5; 84f356e518f3c709d640932bd51aa047. XX FH Key Location/Qualifiers FH FT source 1..7563 FT /organism="Barley yellow mosaic virus" FT /host="Hordeum vulgare" FT /strain="2 (resistance-breaking)" FT /isolate="BRZ" FT /mol_type="mRNA" FT /country="United Kingdom:Oxfordshire" FT /isolation_source="Brize Norton" FT /db_xref="taxon:12465" FT 5'UTR <1..134 FT CDS 135..7373 FT /gene="1" FT /product="polyprotein 1" FT /db_xref="GOA:Q70WS4" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q70WS4" FT /protein_id="CAD56474.1" FT /translation="MEQTLAQAVSRRGKTNTPMAEERKPFSPMNFSANFVAPELFYSAN FT VRKIKNIFRERSTTRFLDAISSDFELVAFLTLSPAHLMQLETTLRQEIRSCVVPIVTSD FT ASFETVAVIKTALDGMRFHFGHTTLEKGWMSMMRHAESCLQESSSSAVNDLQMQIKRVG FT SLLLSGKNRVESCELSVLNLTARRFRIEYGLNGTYFGEHVAMLLDLKRYIYGTVPKEFL FT WAKTKKHSLFTTPEWIKRTPIDCFLFCLRVIPILHRFGVAISLLYWSCVAALNFPAFMA FT FLFKRQFAKYLAHSFAKHSIYFIFLTIIAILWSFRTFASQKPKIVLQARSTAEKEKKLM FT MILASVVGITYLFDYDIAEALGNCLHKISRLSSYLLDDHQGIASRMFGASYGLQAGDSA FT EDAVATIISDLLSVTFKIVDEDASQGTVEDASETTFHSWVGVNTLAGRNMSRPLQYDVN FT KTYALTPQNVQLQARAMADANNCWSMVVGHTGSGKSTYLPVQYSNYLSTKSDRRQQILI FT CEPTQAATENVCAGVAANLGRAVYGRHEGWSRMGDHCIQVMTYGSALQCHAMDPSFIST FT FDAIFLDEAHDVKEHSLVFESICDTFKSVRKFYVSATPRDGSVCPEAARKYPLHVETSV FT CDSYRKFIAAQGGGDLLDISKHDTALVFLAGRPECIKAANAWNASVTGEKRAFPLSSDS FT FATDFSMLTERLKTHKTIIFTTNIIETGVTLSVDCVVDFGHTMRPCLDLNQKSLRLDRR FT RVTRNERQQRIGRAGRLKDGYAIVCGDVDRAVNVISPDVLYGAALLSFKHNVPFYMNET FT FESSWLEGVTKAQADTMTIFKLPIFLTRDLINADGSVAREFLDVLKKHQFTTSDIKQAP FT SVTAKHIFPTWASYFSLHQALHYGDDKDEIPHELRYARVPFSVTTLSKFDWPALALACE FT KHRASMSNVFAGIEEPARVVTLQTNPANIQASITHLTHMSKNYKTLIENNQHVRQSMMT FT NVMFKWFSSTRITKDLDRNLRRCTDNLSVVEATLSSLRQILAGNTQVHATPHMQSTLED FT IIELQASDTLTEESLANALGIFVPKCNLFLLLATKGFKLVYVVCILLLVNLVYTGLRKW FT REHLKKKGSNEILTNTMPVSEGGEILAEVMKMEPKMRKNIKRDMDAAVESKLCGFTFVF FT PDDDKIGLEGKGNKYRPREDARLMYSTREDATFDAWNEKAKERRKKVTDKAEPELRRAY FT EKRPYFNFYDLQTDSNILEAIFYTTEGDEFFRTADPNRDMNLVADKLRSFLDTKLVVGH FT HQRKLLEETANVVIKDTKGTAHNMEISQHDPDFLKQNGSGKVGYPEHRGQFRQEGVAVT FT GDYDLEAEFGADADEITLEASTGILLSQVGVDVATRVGRICIGTFNMNCYFYSDWILVP FT GHLQDRSGNVTIQFPDQTVQTTTDALNANGVKRFYGLDVIAIRRPAILRPRTKLVKAFA FT IEEPVIAQMVFVDAQGVRKFTQSDWARKEENSGRWSHKISTVLGMCGCPVLDVGKNRLI FT GIHVATNYTKKRNEFQPFTQEVVDFINGPGTKIPYCPWVFDRPACGYSSHNALFEKPTT FT LADVIHMQASDGLHNINNAIEGFGSSLKGQLVSPPTESTRQRFDKLFGSGSFELIGQMN FT KGLIDKHVIVGENDDVYDFMREHPTFTWLKDFMNEYAPSVLSYSAYYKDLCKYNRAKHV FT LTYNPEELHCATKGLIKMLEDAGLTQGSVRTPQQVVSDIQWNTSAGPSYQGKKRDLCAH FT LSDDEVLHLAEVCRQQFLEGKSTGVWNGSLKAELRTIEKVEAEKTRVFTASPITSLFAM FT KFYVDDFNKKFYATNLKAPHTVGINKFGRGWEKLHDKLNRPGWLHGSGDGSRFDSSIDP FT FFFDVVKTIRKHFLPSEHHKAIDLIYDEILNTTICLANGMVIRKNVGNNSGQPSTVVDN FT TLVLMTAFLYAYIHKTGDRELALLNGRFIFVCNGDDNKFAISPQFDEEFGHDFSPELVE FT LGLTYEFDDITSDICENPYMSLTMVKTPFGVGFSLPVERIIAIMQWSKKGGVLHSYLAG FT ISAIYESFNTPKLFKSIYAYLLWLTEEHEAEILAAMTQSSTALPIPSMLDVYRLHYGDD FT EIWLQAADPLTDAQKEAAHTAAADRARLDLADADRRRKVEADRVEAARVKKAADAVLKP FT VNLTATRMPTEDDGKLKTPSGARIPSSAADGNWSVPATKQVNAGLTLKIPLNKLKSVPK FT SVMEHNNSVALESELKAWTDAVRTSLGITTDEAWIDALIPLIGWCCNNGTSDKHAENQV FT MQIDSGKGAVTEMSLSPFIVHARMNGGLRRIMRNYSDETVLLITNNKLVAHWSMKHGAS FT ANAKYAFDFFVPRSWMNPQDIEVSKQARLAALGTGTYNTMLTSDTTNLRKTTNHRVLDS FT DGHPELT" FT mat_peptide 135..1118 FT /gene="1" FT /product="P3 protein" FT mat_peptide 1119..1316 FT /gene="1" FT /product="6K1 protein" FT mat_peptide 1317..3293 FT /gene="1" FT /product="CI protein" FT mat_peptide 3294..3659 FT /gene="1" FT /product="6K2 protein" FT mat_peptide 3660..4220 FT /gene="1" FT /product="VPg protein" FT mat_peptide 4221..4895 FT /gene="1" FT /product="NIa-Pro protein" FT mat_peptide 4896..6479 FT /gene="1" FT /product="NIb protein" FT mat_peptide 6480..7370 FT /gene="1" FT /product="Coat protein" FT 3'UTR 7374..>7563 XX SQ Sequence 7563 BP; 2099 A; 1749 C; 1710 G; 2005 T; 0 other; aacaaacaca aacatcgcac gcttcccgag ctcacaacac ctgtagagtg atttttgtca 60 tcctactgtt tgtaagcttt tcagcaaatc aacccgcttg ctttcgcacc tccttcacct 120 tcactctcgc tcttatggag caaaccctag ctcaagctgt gtcacggaga ggtaaaacaa 180 acacacctat ggcagaagag cggaaacctt tcagccccat gaatttttcc gcaaactttg 240 ttgctcctga gctcttttat agtgctaatg tgaggaaaat caaaaatatc ttcagagagc 300 gcagcacaac tcggtttctg gatgcaattt caagtgattt tgagctcgtt gcttttctca 360 ctttgagtcc cgctcactta atgcaacttg agacaactct gcgccaagag atacgttcgt 420 gtgttgtgcc aattgttacc tctgatgcta gcttcgaaac agtcgctgtc atcaaaactg 480 ctctggatgg catgagattt cactttggac acaccactct tgaaaagggg tggatgtcta 540 tgatgcgcca tgcagagagt tgtctgcaag agagctcctc ttcggctgtg aatgatctgc 600 agatgcagat taaacgcgtt ggatcactgc tcttgagtgg aaaaaatcgc gtagaaagct 660 gcgaactatc tgtcttgaac ctcacagcgc gacgtttcag gatcgaatat gggctaaatg 720 gtacatactt tggcgaacat gttgctatgc tactcgacct aaagcgttat atctatggta 780 ccgtgccaaa agagtttttg tgggcgaaaa ccaaaaagca ctcgctattc acaacccccg 840 agtggatcaa gcgtacgccc atcgactgtt tcttgttctg tcttcgcgtt atccctatct 900 tacataggtt tggtgtggcc atatcactcc tttactggtc gtgtgttgct gctctgaatt 960 ttcctgcttt tatggctttc ttatttaagc gtcagtttgc taagtattta gctcactctt 1020 ttgctaaaca ctccatctac tttatatttt taactataat tgctatttta tggtcttttc 1080 gcacttttgc ttctcaaaaa ccaaaaatag tgcttcaggc taggagcaca gcagaaaaag 1140 agaaaaagct tatgatgatt ctagctagtg tcgttgggat cacttatctc ttcgattatg 1200 acatagcaga agctctcggg aattgtctac ataaaataag ccgtctatcc tcatatcttc 1260 tcgacgacca tcaaggcatc gcatcacgaa tgtttggagc gagctatggg cttcaggctg 1320 gcgatagtgc tgaggacgca gtcgcaacga taatcagcga cctactgtct gttactttta 1380 aaattgtgga cgaagacgca tcacagggca ccgtggagga tgcatctgag acaacctttc 1440 acagttgggt tggtgttaac acacttgcag gtcgcaatat gtcaagacca ctccagtatg 1500 acgtcaataa aacgtatgcg ctcacacctc aaaatgtcca gctccaagcg cgagctatgg 1560 cagacgctaa caactgctgg tcaatggttg ttggtcatac aggatctggg aagtcaacat 1620 acttacctgt gcagtactcc aattacttat ccaccaagag tgataggcga cagcagattc 1680 ttatctgcga gccaactcag gctgccactg agaacgtttg cgctggcgtt gctgccaatc 1740 ttggcagagc tgtttacggg cgccatgagg gttggtccag aatgggggat cattgcattc 1800 aagttatgac gtatggttcc gcgctccagt gccatgctat ggaccctagc ttcatatcaa 1860 ctttcgacgc aattttcctt gatgaagcac acgacgtcaa agagcactct ctagtctttg 1920 agagcatttg tgacacattt aaatccgttc gaaagttcta tgtttcagcc actcctagag 1980 atggaagtgt atgtcctgaa gcagccagga aatatccttt acatgttgaa actagcgttt 2040 gcgattcgta tcggaagttc attgcagctc aaggtggggg agatttgctg gacatctcaa 2100 aacatgacac agctttagtc tttctagcag gacggcctga gtgtattaaa gctgctaatg 2160 cctggaatgc tagtgtcacc ggtgagaagc gcgcctttcc tttgtcgagc gacagctttg 2220 ctaccgactt ctcaatgctc accgagaggc ttaaaacaca caaaaccatc atcttcacca 2280 cgaacataat tgagacaggt gtcactctta gcgttgattg tgttgttgat ttcggccata 2340 cgatgcgccc atgtttggat ctcaatcaaa aatcattacg tcttgatcga cgcagagtga 2400 cgcgaaacga aagacagcag agaattgggc gagcaggtcg acttaaagac gggtacgcca 2460 tagtctgtgg agatgttgat agggctgtaa atgtcatctc tcctgatgtt ctttatggtg 2520 ccgctcttct gagttttaaa cacaatgtgc ctttctacat gaacgaaaca tttgagagtt 2580 cctggttgga gggtgttaca aaggcacaag ctgacacaat gacaatattc aagcttccta 2640 tatttctaac acgagacctc attaatgcag atggctcagt tgctagggag tttctcgatg 2700 ttttaaagaa gcatcaattc acaacaagtg acataaagca agcaccaagt gtcacagcca 2760 aacatatctt cccaacttgg gcttcatact tctctctcca ccaggcgctt cattatggtg 2820 atgacaagga tgagatacca cacgagttgc gatatgcgcg cgttcctttc tccgtcacaa 2880 ctttgagcaa attcgattgg ccagccttag ctcttgcatg cgagaaacat agagcttcca 2940 tgtcaaatgt gtttgctggc atcgaggaac ccgcacgcgt tgttactcta caaacaaatc 3000 ctgcgaacat acaagcaagc atcacacatt taacgcatat gagcaagaac tataaaactc 3060 ttattgaaaa caaccagcac gtgcgccaat ccatgatgac gaatgttatg ttcaagtggt 3120 tttcttccac tcgcattacc aaagatcttg ataggaactt gcgaagatgc acggataacc 3180 tctcagttgt cgaggccacg cttagctcac ttagacaaat cttagctggc aacacgcagg 3240 ttcacgcaac gccgcacatg cagagcactc ttgaggatat tattgaactc caggctagcg 3300 acacactcac ggaagaaagc ttagcaaacg cacttggcat ctttgttcca aagtgcaacc 3360 tctttctgct gctagctact aaaggtttca agcttgtgta cgttgtctgc atcttacttc 3420 ttgtgaacct tgtttatact ggtcttcgta agtggcgcga gcatctcaag aaaaagggaa 3480 gtaacgaaat cctaactaac acaatgccag ttagcgaagg aggcgaaatt ctcgctgaag 3540 ttatgaaaat ggagcctaaa atgagaaaga acatcaagag ggatatggat gcagctgttg 3600 agagcaaact atgtggcttc acttttgttt ttccagatga tgataaaatt ggtcttgaag 3660 gcaagggaaa caaatatcgc cctcgcgaag atgctcgcct gatgtactcc actagagaag 3720 acgccacctt tgacgcctgg aatgagaaag cgaaggaaag acgcaagaaa gtaaccgaca 3780 aagctgagcc agagcttcgg agagcctatg agaagagacc atacttcaat ttctacgacc 3840 ttcaaacaga tagcaacatt ctggaagcta ttttctacac cactgaaggt gatgagtttt 3900 tccgaacagc agaccctaac agggacatga acttggttgc tgataaactg cgctcttttc 3960 tcgatacaaa gcttgttgtt ggacaccatc agcggaagct actagaagaa acagctaatg 4020 ttgttatcaa ggacacgaag ggaactgcgc acaatatgga aatttcacag catgatccag 4080 attttctgaa gcagaatggg tccggcaaag ttgggtatcc agaacaccga ggacagtttc 4140 ggcaggaagg agttgccgtc acaggggatt acgatcttga agctgagttt ggcgccgatg 4200 ctgatgaaat aacgcttgag gcctctactg gaattttatt gtcacaagtt ggggtcgatg 4260 ttgcaactcg agttggaaga atttgcattg gcactttcaa tatgaactgt tacttctata 4320 gcgactggat tctagttcca ggacacctgc aagatagatc tggcaacgta acaattcaat 4380 tccctgacca aacagtgcaa accacaaccg acgcactcaa cgcgaatggt gtgaaacgat 4440 tctatggatt agatgtaata gcaattcgtc gccctgctat cttgcggcct cgcaccaagt 4500 tggtcaaagc ttttgctatt gaggaaccgg ttatcgcaca aatggtcttt gttgatgcac 4560 agggagtccg taagttcact caatctgatt gggctaggaa ggaggagaat tctgggcgtt 4620 ggtcacacaa gatctccact gttcttggta tgtgcggatg cccagtcttg gacgttggaa 4680 agaacagatt gatagggatc catgttgcca caaactacac aaagaagcgc aacgagttcc 4740 aacccttcac tcaggaggtt gtcgacttta taaatggacc tggaacaaaa atcccctact 4800 gcccatgggt atttgataga ccggcttgtg ggtattcatc ccacaacgct ttgttcgaga 4860 aaccaaccac actggctgac gtcattcaca tgcaggcttc tgatggtttg cacaacatca 4920 acaatgccat tgagggtttt gggagctcac tgaagggtca gcttgtgtca ccacctactg 4980 aatccaccag gcaacgtttc gataagctgt ttggtagtgg cagctttgag ctcattgggc 5040 agatgaacaa aggcttaatc gacaagcacg tgattgttgg ggaaaacgat gatgtttatg 5100 acttcatgcg cgagcaccca acatttactt ggttgaaaga tttcatgaat gaatatgcgc 5160 ctagtgtttt gtcttattct gcttactaca aggacctttg taagtataat cgtgcaaaac 5220 acgtgctcac ttacaaccca gaagagctcc attgtgcgac gaaaggactg atcaagatgt 5280 tggaagacgc tggcttgaca caaggcagtg tgaggacacc ccaacaagtt gtttcggaca 5340 ttcaatggaa cacttccgct ggaccgagtt atcaagggaa gaaacgcgac ctctgtgccc 5400 acttgagcga tgacgaggtg ctgcatcttg ctgaggtttg tcgtcaacaa tttcttgagg 5460 gcaagtcaac tggagtgtgg aacggttctc tgaaagccga gttgagaacc attgagaaag 5520 ttgaggcgga gaaaacgcgc gttttcacag cctctcccat aacaagcctg tttgccatga 5580 aattttacgt tgatgacttt aacaagaagt tctatgctac caatctaaaa gccccccaca 5640 ctgttggcat caataagttc ggtaggggat gggaaaaatt gcatgacaag cttaatcgcc 5700 ctggatggtt gcacggcagt ggggatggtt ctaggttcga tagctctatc gaccctttct 5760 tctttgacgt tgtgaaaact attcgtaagc actttctccc ttctgagcat cataaagcca 5820 ttgatctcat atatgatgag attctcaaca caaccatctg cctggctaat gggatggtta 5880 tcaggaagaa tgttggaaac aatagcgggc agcctagtac tgttgttgac aacacacttg 5940 tgcttatgac tgcattcctc tacgcataca ttcacaagac aggggatcgt gagttagcct 6000 tgctaaacgg gcgtttcatc tttgtttgca acggtgatga caataagttt gccatatctc 6060 cgcagtttga tgaagagttt gggcacgatt tttccccaga acttgttgaa ctcggactta 6120 cgtatgagtt tgatgacatc actagcgaca tttgcgagaa tccttatatg tccctcacca 6180 tggttaaaac tccttttggt gttggtttct ctcttcccgt ggaaagaatc atagccataa 6240 tgcagtggtc caagaaaggg ggggttttgc actcatattt agctggcatc tctgcaattt 6300 acgaatcctt caacacacca aaactcttca aatcaatcta tgcgtacctt ctttggctca 6360 ctgaggagca cgaggcagaa attcttgcag ccatgactca atcctcaacc gcccttccta 6420 taccatcaat gctcgatgtt tatcggttgc actatggtga tgatgaaatt tggctgcaag 6480 cagctgatcc tctcactgat gcgcaaaaag aagctgcaca cactgccgca gctgatagag 6540 cacgccttga cctagccgac gctgatcgca gacgtaaagt tgaagcggac cgtgtggaag 6600 cggcaagagt taaaaaggca gctgatgctg tgctaaaacc agttaacctc acagcaacac 6660 gcatgcccac agaagatgat ggcaaactta aaacgccatc tggtgctaga ataccatcat 6720 cagctgcaga tggtaactgg agcgtgccgg caacgaagca agttaacgct ggtttaacac 6780 tcaaaattcc cctgaataag ctcaaaagtg tgcctaagtc tgttatggaa cataacaact 6840 cagttgcact tgaatctgag ctaaaagcct ggactgatgc tgtgcgcaca agtttaggta 6900 tcacaactga tgaggcatgg atcgatgccc tcatacccct catcggatgg tgctgcaaca 6960 atggcacctc agacaagcat gctgagaatc aagtaatgca aatcgacagc ggaaagggag 7020 ctgtcacaga gatgagtctg tccccattta ttgttcatgc tcgaatgaat ggtggactcc 7080 gaaggatcat gcgtaactac agtgatgaaa ccgtcttact catcacaaac aacaaactag 7140 ttgcacattg gtcaatgaag catggcgctt ctgcaaatgc aaaatatgct ttcgatttct 7200 tcgtcccacg atcatggatg aacccacagg acatcgaagt atcaaagcaa gcgcgcttag 7260 cagcacttgg aactggaacg tataacacca tgttaacttc cgacactacc aatctgcgta 7320 agacaaccaa ccacagggtt ctggactcag atggacaccc agaactaacc taaaccatca 7380 ccccgtgcct tatacatcac ccacccccac tcataattca gtctttaaat tatgttcgtg 7440 acgtctttgt atcaggctcg gaacggttct atgatccata tgcctttggc agttacaatg 7500 tcagcattct cattgaggag tatgacagcg tttgatcagc cgttttcaat catccgtcgt 7560 tgg 7563 //