ID AJ515481; SV 1; linear; mRNA; STD; VRL; 7381 BP. XX AC AJ515481; XX DT 11-SEP-2003 (Rel. 77, Created) DT 19-SEP-2003 (Rel. 77, Last updated, Version 2) XX DE Barley yellow mosaic virus 1 gene for polyprotein 1, genomic RNA, isolate DE HAT XX KW 1 gene; 6K1 protein; 6K2 protein; CI protein; coat protein; KW NIa-Pro protein; NIb protein; P3 protein; polyprotein 1; VPg protein. XX OS Barley yellow mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 1-7381 RA Adams M.J.; RT ; RL Submitted (07-NOV-2002) to the INSDC. RL Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research, RL Harpenden, Herts AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1099/vir.0.19347-0. RX PUBMED; 13679620. RA Kuehne T., Shi N., Proeseler G., Adams M., Kanyuka K.; RT "The ability of a bymovirus to overcome the rym4-mediated resistance in RT barley correlates with a codon change in the VPg coding region on RNA1."; RL J. Gen. Virol. 84(Pt 10):2853-2859(2003). XX DR MD5; 1d41efe4f56f10d749fde5d4434ef663. XX FH Key Location/Qualifiers FH FT source 1..7381 FT /organism="Barley yellow mosaic virus" FT /host="Hordeum vulgare" FT /strain="2 (resistance-breaking)" FT /isolate="HAT" FT /mol_type="mRNA" FT /country="United Kingdom:Gloucestershire" FT /isolation_source="Hatherop" FT /db_xref="taxon:12465" FT 5'UTR <1..143 FT CDS 143..7381 FT /gene="1" FT /product="polyprotein 1" FT /db_xref="GOA:Q70WS5" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q70WS5" FT /protein_id="CAD56473.1" FT /translation="MEQTLAQAVSRKGQTNTPMAEERKHFSPMNFSANFVAPELFYSAN FT VRKIKNIFRERSTTRFLDAISSDFELVAFLTLSPAHLMQLETTLRQEIRSCVVPIVTSD FT ASFETVAVIKTALDGMRFHFGHTTLEKGWMSMMRHAESCLQESSSSAVNDLQMQIKRVG FT SLLLSGKNRVESCELSVLNLTARRFRIEYGLNGTYFGEHVAMLLDLKRYIYGTVPKEFL FT WAKTKKHSLFTTPEWIKRTPIDCFLFCLRVIPILHRFGVAISLLYWSCVAALNFPAFMA FT FLFKRQFAKYLAHSFAKHSIYFIFLLSNCILWSFRTFCFQKPKIVLQARSTAEKEKKLM FT MILASVVGITYLFDYDIAEALGNCLHKISRLSSYLLDDHQGIASRMFGASYGLQAGDSA FT EDAVTTIISDLLSVTFKIVDEDASQGTVEDASETTFHSWVGVNTLAGRNMSRPLQYDVN FT KTYALTPQNVQLQARAMADANNCWSMVVGHTGSGKSTYLPVQYSNYLSTKSDRRQQILI FT CEPTQAATENVCAGVAANLGRAVYGRHEGWSRMGDHCIQVMTYGSALQCHAMDPSFIST FT FDAIFLDEAHDVKEHSLVFESICDTFKSVRKFYVSATPRDGSVCPEAARKYPLHVETSV FT CDSYRKFIAAQGGGDLLDISKHDTALVFLAGRPECIKAANAWNASVTGEKRAFPLSSDN FT FATDFSMLTERLQTHKTIIFTTNIIETGVTLSVDCVVDFGHTMRPCLDLNQKSLRLDRR FT RVTRNERQQRIGRAGRLKDGYAIVCGDVDRAVNVISPDVLYGAALLSFKHNVPFYMNET FT FESSWLEGVTKAQADTMTIFKLPIFLTRDLINADGSVAREFLDVLKKHQFTTSDIKQAP FT SVTAKHIFPTWASYFCLHQALHYGDDKDEIPHELRYARVPFSVTTLSKFDWPALALACE FT KHRASMSNVFAGIEEPARVVTLQTNPANIQASITHLTHMSKNYKTLIENNQHVRQSMMT FT NVMFKWFSSTRITKDLDRNLRRCTDNLSVVEATLSSLRQILAGNTQVHATPHMQSTLED FT IIELQASDTLTEESLANALGIFVPKCNLFLLLATKGFKLVYVVCILLLVNLVYTGLRKW FT REHLKQKGSNEILTNTMPVSEGGEILAEVMKMEPKMRKNIKRDMDAAPESKLCGFTFVF FT PDNDKIGLEGKGNKYRPREDARLMYSTREDATFDAWNEKAKERRKKVTDKAEPELRRAY FT EKRPYFNFYDLQTDSNILEAIFYTTEGDEFFRTADPNRDMNLVADKLRSFLDTKLVVGH FT HQRKLLEETANVIIKDTKGTAHNMEISQDDPDFLKQNGSGKVGYPEHRGQFRQEGVAVT FT GDYDLEAEFGADADEITLEASTGILLSQVGVDVATRVGRICIGTFNMNCYFYSDWILVP FT GHLQDRSGNVTIQFPDQTVQTTIDALNANGVNRFYGLDVIAIRRPAILRPRTKLVKAFA FT IEEPVIAQAVFVDAQGVRKFTQSNWARKEENSGRWSHKISTVLGMCGCPVLDVGKNRLI FT GIHVATNYTKKRNEFQPFTQEVVDFINGPGTKIPYCPWVFDRPACGYSSHNALFEKPTT FT LADVIHMQASDGLHNINNAIEGFGSSLKGQLVSPPTESTRQRFDKLFGSGSFELIGQMN FT KGLIDKHVIVGENDDVYDFMREHPTFTWLKDFMNEYAPSVLSYSAYYKDLCKYNRAKHV FT LTYNPEELNCATKGLIKMLEDAGLTQGSVRTPQQVVSDIQWNTSAGPSYQGKKRDLCAH FT LSDDEVLHLTEVCRQQFLEGKSTGVWNGSLKAELRTIEKVEAEKTRVFTASPITSLFAM FT KFYVDDFNKKFYATNLKAPHTVGVNKFGRGWEKLHDKLNRPGWLHGSGDGSRFDSSIDP FT FFFDVVKTIRKHFLPSEHHKAIDLIYDEILNTTICLANGMVIRKNVGNNSGQPSTVVDN FT TLVLMTAFLYAYIHKTGDRELALLNERFILVCNGDDNKFAISPQFDEEFGHDFSPELVE FT LGLTYEFDDITSDICENPYMSLTMVKTPFGVGFSLPVERIIAIMQWSKKGGVLHSYLAG FT ISAIYESFNTPKLFKSIYAYLLWLTEEHEAEILAAMTQSSTALPIPSMLDVYRLHYGDD FT EIWLQAADPLTDAQKEAAHTAAADRARLDLADADRRRKVEADRVEAARVKKAADAVLKP FT VNLTATRMPTEDDGKLKTPSGARIPSSAADGNWSVPATKQVNAGLTLKIPLNKLKSVPK FT SVMEHNNSVALESELKAWTDAVRTSLGITTDEAWIDALIPFIGWCCNNGTSDKHAENQV FT MQIDSGKGAVTEMSLSPFIVHARMNGGLRRIMRNYSDETVLLITNNKLVAHWSMKHGAS FT ANAKYAFDFFVPRSWMNPQDIEVSKQARLAALGTGTYNTMLTSDTTNLRKTTNHRVLDS FT DGHPELT" FT mat_peptide 143..1126 FT /gene="1" FT /product="P3 protein" FT mat_peptide 1127..1324 FT /gene="1" FT /product="6K1 protein" FT mat_peptide 1325..3301 FT /gene="1" FT /product="CI protein" FT mat_peptide 3302..3667 FT /gene="1" FT /product="6K2 protein" FT mat_peptide 3668..4228 FT /gene="1" FT /product="VPg protein" FT mat_peptide 4229..4903 FT /gene="1" FT /product="NIa-Pro protein" FT mat_peptide 4904..6487 FT /gene="1" FT /product="NIb protein" FT mat_peptide 6488..7378 FT /gene="1" FT /product="Coat protein" XX SQ Sequence 7381 BP; 2066 A; 1702 C; 1670 G; 1943 T; 0 other; caaaacgaaa caaacacaaa catctcacgc ttcccaagct tacaatacct gtagagtgat 60 ttttgtcatc ctactgtttg taagtttctc agcgaatcaa cccgctagct ttcgcacctc 120 cttgatcttc actctcgctc ttatggagca aaccctagct caagctgtgt cacggaaagg 180 tcaaacaaac acacctatgg cagaagagcg gaaacatttc agccccatga atttttccgc 240 aaactttgtt gcccctgagc tcttctatag tgctaatgtg aggaaaatta aaaatatctt 300 cagagagcgc agcacaactc ggtttctgga cgcaatttca agtgattttg agcttgttgc 360 ttttctcacc ttgagtcccg ctcacttaat gcaacttgag acaactctgc gccaagagat 420 acgttcgtgt gttgtgccaa ttgtcacttc cgatgctagc ttcgaaacag ttgctgtcat 480 caaaactgct ctggatggca tgagatttca ctttggacac accactcttg aaaaagggtg 540 gatgtctatg atgcgccatg cagagagctg cctgcaagag agctcctctt cagctgtgaa 600 tgatctgcag atgcagatta aacgtgttgg atcgctgctt ttgagtggaa aaaatcgcgt 660 agaaagctgc gaactatctg tcttgaacct cacagcgcga cgtttcagga tcgaatatgg 720 gctaaatggt acatactttg gcgaacatgt tgctatgcta ctcgacttaa agcgttatat 780 ctatggtacc gtgccaaaag agtttttgtg ggcgaaaacc aaaaagcact cgctattcac 840 aacccccgag tggatcaagc gtacgcccat cgactgtttc ttgttctgtc ttcgcgttat 900 ccctatctta cataggtttg gtgtggccat atcactcctt tactggtcgt gtgttgctgc 960 tctgaatttt cctgctttta tggctttctt atttaagcgt cagtttgcta agtatttagc 1020 tcactctttt gctaaacact ccatctactt tatattttta ttatctaatt gtattttatg 1080 gtcttttcgc actttttgct ttcaaaaacc aaaaatagtg cttcaggcta ggagcacagc 1140 agaaaaggag aaaaagctca tgatgattct agctagcgtc gttgggatca cttatctctt 1200 cgattatgac atagcagaag ctctcgggaa ttgtctacat aaaataagcc gtctatcctc 1260 atatcttctc gacgaccatc aaggcatcgc atcacgaatg tttggagcga gctatgggct 1320 tcaggctggc gatagtgctg aggatgcagt cacaacgata atcagcgacc tactgtctgt 1380 tactttcaaa attgtggacg aagacgcatc acagggcacc gtggaggatg catctgagac 1440 aacctttcac agttgggttg gtgttaacac acttgcaggt cgcaatatgt caagaccact 1500 ccagtatgac gtcaataaaa cgtatgcact cacacctcaa aatgtccagc tccaagcgcg 1560 agctatggca gacgctaaca actgctggtc aatggttgtt ggtcatacag gatctggaaa 1620 gtcaacatac ttacctgtgc agtactccaa ttacttatcc accaagagtg ataggcgaca 1680 gcagattctt atctgcgagc caactcaagc tgccactgag aacgtttgcg ctggcgttgc 1740 tgccaatctt ggcagagctg tttacggacg ccatgagggt tggtccagaa tgggggatca 1800 ttgcattcaa gttatgacgt atggttccgc gctccagtgc catgctatgg accctagctt 1860 catatcaact ttcgacgcaa ttttccttga tgaagcacac gacgtcaaag agcactctct 1920 agtctttgag agcatttgtg acacatttaa atccgttcga aagttctatg tttcagccac 1980 ccctagagat ggaagtgtat gtcctgaagc agctaggaaa tatcctttac atgtcgaaac 2040 tagcgtttgc gactcgtatc ggaagtttat tgcagctcaa ggtgggggag atttgctgga 2100 catctcaaaa catgacacag ctttagtctt tctagcagga cggcctgagt gtattaaagc 2160 tgctaatgcc tggaatgcta gtgtcaccgg tgagaagcgc gcctttcctt tgtcgagcga 2220 caactttgcc accgacttct caatgctcac cgagaggctc caaacacaca aaaccatcat 2280 cttcaccacg aacataattg agacaggtgt cactcttagc gttgattgtg ttgttgattt 2340 cggccacacg atgcgcccat gtttggatct caatcaaaaa tcattacgtc ttgatcgacg 2400 cagagtgacg cggaacgaaa gacagcagag aattgggcga gcaggtcggc ttaaagacgg 2460 gtacgccata gtgtgtggag atgttgatag ggctgtaaat gtcatctctc ctgatgttct 2520 ttatggtgcc gctcttctga gttttaaaca caatgtgcct ttctacatga acgaaacatt 2580 tgagagttcc tggttggagg gtgttacaaa ggcacaagct gacacaatga caatattcaa 2640 gcttcctata tttctaacac gagatctcat taatgcagat ggctcagttg ctagggagtt 2700 tctcgatgtt ttaaagaagc atcaattcac aacaagtgac ataaagcaag caccaagtgt 2760 cacagccaaa catatcttcc caacttgggc ttcatacttc tgtctccatc aggcgcttca 2820 ttatggtgat gacaaggatg agataccaca cgagttgcgg tatgcgcgcg ttcctttctc 2880 cgtcacaact ttgagcaaat tcgattggcc agccttagct cttgcatgcg agaaacatag 2940 agcttccatg tcaaatgtgt tcgctggcat cgaggaaccc gcacgcgttg ttactctaca 3000 aacaaatcct gcgaacatac aagcaagcat cacacattta acgcatatga gtaagaacta 3060 taaaactctt attgaaaaca accagcacgt gcgccaatcc atgatgacga atgttatgtt 3120 caagtggttt tcttccactc gcattactaa agatcttgat aggaacttgc gaagatgcac 3180 ggataacctc tcagttgtcg aggccacgct cagctcactt agacaaatct tagctggcaa 3240 cacgcaggtt cacgcaacgc cgcacatgca gagcactctt gaggatatta ttgaactcca 3300 ggctagcgac acactcacgg aagaaagctt agcaaacgca cttggcatct ttgttccaaa 3360 gtgcaacctc tttctgctgc tagctactaa aggtttcaag cttgtgtacg ttgtctgcat 3420 cttacttctt gtgaaccttg tttatactgg tcttcgtaag tggcgcgagc atctcaagca 3480 aaagggaagt aacgaaatcc taactaacac aatgccagtt agcgaagggg gcgaaattct 3540 cgctgaagtt atgaaaatgg agcctaaaat gagaaagaac atcaagaggg atatggatgc 3600 agctcctgag agcaaactat gtggcttcac ttttgttttt ccagataatg ataaaattgg 3660 tcttgaaggc aagggaaaca aataccgccc tcgcgaagac gctcgcctga tgtactccac 3720 tagagaagac gctacttttg acgcctggaa tgagaaagcg aaggaaagac gcaagaaagt 3780 aaccgacaaa gctgagccag agcttcgcag agcctatgag aagagaccat acttcaattt 3840 ctacgacctt caaacagata gcaacattct ggaagctatt ttctacacca ctgaaggtga 3900 tgagtttttc cgaacagcag accctaacag ggacatgaac ttggttgctg ataaactgcg 3960 ctcttttctc gatacaaagc ttgttgttgg acaccatcag cggaagctgc tagaagaaac 4020 agctaatgtt attatcaagg acacgaaggg aactgcgcac aatatggaaa tttcacagga 4080 tgatccagat tttctgaagc agaatgggtc cggcaaagtt gggtatccag aacaccgagg 4140 acagtttcgg caggaaggag ttgccgtcac aggggattac gatcttgaag ctgagtttgg 4200 cgccgatgct gatgaaataa cgcttgaggc ctctactgga attttattgt cacaagttgg 4260 ggtcgatgtt gcaactcgag ttggaagaat ttgcattggc actttcaata tgaactgtta 4320 cttctatagc gactggattc tagttccagg acacctgcaa gatagatctg gcaacgtaac 4380 aattcaattc cctgaccaaa cagtgcaaac cacaatcgac gcactcaacg cgaatggtgt 4440 gaaccgattc tatggattag atgtaatagc aattcgtcgc cctgctatct tgcggcctcg 4500 caccaagttg gtcaaagctt ttgctattga ggaaccagtt atcgcacaag cggtctttgt 4560 tgatgcacag ggagtccgta agttcactca atctaattgg gccaggaagg aggagaattc 4620 tgggcgttgg tcacacaaga tctccactgt tcttggtatg tgcggatgcc cagtcttgga 4680 cgttggaaag aacagattaa tagggatcca tgttgccaca aactacacaa agaagcgcaa 4740 cgagttccaa cccttcactc aggaggttgt cgactttata aatggacctg gaacaaaaat 4800 cccctactgc ccatgggtat ttgatagacc ggcttgtggg tattcatccc acaacgcttt 4860 gttcgagaaa ccaaccacac tggctgacgt cattcacatg caggcttctg atggtttgca 4920 caacatcaac aatgccattg agggttttgg gagctcactg aagggtcagc ttgtgtcacc 4980 acctactgaa tccaccaggc aacgtttcga taagctgttt ggtagcggca gctttgagct 5040 cattgggcag atgaacaaag gcttaatcga caagcacgtg attgttgggg aaaacgatga 5100 tgtctatgac ttcatgcgcg agcacccaac atttacttgg ttgaaagatt tcatgaatga 5160 atatgcgccc agtgttttgt cttattctgc ttactacaag gacctttgta agtataatcg 5220 tgcaaaacac gtgctcactt acaacccaga agagctcaat tgtgcgacga aaggactgat 5280 caagatgttg gaagacgctg gcttgacaca aggcagtgtg aggacacccc aacaagttgt 5340 ttcggacatt caatggaaca cttccgctgg accaagttat caagggaaga aacgcgacct 5400 ctgtgcccac ttgagcgatg acgaggtgct gcatcttact gaggtttgtc gtcaacaatt 5460 tcttgagggc aagtcaactg gagtgtggaa cggttctctg aaagctgaat tgagaaccat 5520 tgagaaagtt gaggcggaga aaacgcgcgt ctttacagcc tctcccataa caagcctgtt 5580 tgccatgaaa ttctacgttg atgactttaa caagaagttc tatgctacca atctgaaagc 5640 cccccacact gttggcgtca ataagttcgg taggggatgg gaaaaattgc atgacaagct 5700 taatcgccct ggatggttgc acggcagtgg ggatggttct aggttcgata gctctatcga 5760 tcctttcttc tttgacgttg tgaaaactat tcgtaagcac tttctccctt ctgagcatca 5820 taaagccatt gatctcatat atgatgagat tctcaacaca accatctgcc tggctaatgg 5880 gatggttatc aggaagaatg ttggaaacaa tagcgggcag cctagtactg ttgttgacaa 5940 cacacttgtg cttatgactg cattcctcta cgcatacatt cacaagacag gggatcgtga 6000 gttagccttg ctaaacgagc gtttcatcct tgtttgcaac ggtgatgaca ataagtttgc 6060 catatctccg cagtttgatg aagagtttgg gcacgatttt tccccagaac ttgttgaact 6120 tggacttacg tatgagtttg atgacatcac tagcgacatt tgcgagaatc cttacatgtc 6180 cctcactatg gttaaaactc cttttggtgt tggtttctct cttcccgtgg aaagaatcat 6240 agccataatg cagtggtcca agaaaggggg ggttttgcac tcatatttag ctggcatctc 6300 tgcaatttac gaatccttca atacaccaaa actcttcaaa tcaatctatg cgtaccttct 6360 ttggctcact gaggagcacg aggcagaaat tcttgcagcc atgactcaat cctcaaccgc 6420 ccttcctata ccatcaatgc tcgatgttta tcggttgcac tatggtgatg atgagatttg 6480 gctgcaagca gctgatcctc tcactgatgc gcaaaaagaa gctgcacaca ctgccgcagc 6540 tgatagagca cgcctcgacc tagccgacgc tgaccgtaga cgtaaagttg aagcggaccg 6600 tgtggaagcg gcaagagtta aaaaggcagc tgatgctgtg ctaaaaccag ttaacctcac 6660 agcaacacgc atgcccacag aagatgatgg caaacttaaa acgccatctg gtgctagaat 6720 accatcatca gctgcagatg gtaactggag cgtgccggca acgaagcaag ttaacgctgg 6780 tttaacactt aaaattcccc tgaataagct caaaagtgtg cctaagtctg ttatggaaca 6840 taacaactca gttgcacttg aatctgagct aaaagcctgg actgatgctg tgcgcacaag 6900 tttaggtatc acaactgatg aggcatggat cgatgccctc atacccttca tcggatggtg 6960 ctgcaacaat ggcacctcag acaagcatgc tgagaatcaa gtaatgcaaa tcgacagcgg 7020 aaagggagct gtcacagaga tgagtctgtc cccatttatt gttcatgctc gaatgaatgg 7080 tggactccga aggatcatgc gtaactacag tgatgaaacc gtcttactca tcacaaacaa 7140 caaactagtt gcacattggt caatgaagca tggcgcttct gcaaatgcaa aatatgcttt 7200 cgatttcttc gtcccacgat catggatgaa cccacaggac atcgaagtat caaagcaagc 7260 gcgcttagca gcacttggaa ctggaacgta taacaccatg ttaacttccg acactaccaa 7320 tctgcgtaag acaaccaacc acagggttct ggactcagat ggacacccag aactaaccta 7380 a 7381 //