ID AF394607; SV 1; linear; genomic RNA; STD; VRL; 3688 BP. XX AC AF394607; XX DT 02-JUL-2002 (Rel. 72, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Bean pod mottle virus strain K-Hancock1 segment RNA-2, complete sequence. XX KW . XX OS Bean pod mottle virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-3688 RX DOI; 10.1016/j.virol.2005.01.020. RX PUBMED; 15721361. RA Gu H., Ghabrial S.A.; RT "The Bean pod mottle virus proteinase cofactor and putative helicase are RT symptom severity determinants"; RL Virology 333(2):271-283(2005). XX RN [2] RP 1-3688 RA Gu H., Zhang C., Ghabrial S.A.; RT "Natural reassortants of Bean pod mottle virus: Molecular characterization RT and symptom severity"; RL Unpublished. XX RN [3] RP 1-3688 RA Gu H., Zhang C., Ghabrial S.A.; RT ; RL Submitted (26-JUN-2001) to the INSDC. RL Plant Pathology, University of Kentucky, S-305 Ag Sci Bldg.-North, RL Lexington, KY 40546, USA XX DR MD5; 9913a2bb7af84720ee9a263c47cf7e2a. XX FH Key Location/Qualifiers FH FT source 1..3688 FT /organism="Bean pod mottle virus" FT /segment="RNA-2" FT /strain="K-Hancock1" FT /mol_type="genomic RNA" FT /db_xref="taxon:12260" FT CDS 467..3523 FT /codon_start=1 FT /product="large polyprotein 2" FT /note="carboxy co-terminal polyprotein; proteolytically FT processed into three mature proteins: a 50 kDa protein FT (corresponding to cowpea mosaic virus 58 kDa protein of FT unknown function), a large coat protein of 41 kDa and a FT small coat protein of 22 kDa" FT /db_xref="GOA:Q8JUF4" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8JUF4" FT /protein_id="AAM73716.1" FT /translation="MFASLIFSGDNRLTEKTIFTCRDLDILVVYYTIATQFRKFLPHYI FT RWHLYTLLIYILPSFLTAEIKYKRNLSNIHISGLFYDGRYKFWTKHEKNLALTEEEKME FT VIRNRGIPADVLAKRAHEFEKHVAHESLKDQIPAVDKLYSTKVNKFAKIMNLRQSVVGD FT LKLLTDGKLYEGKHIPVSNISAGENHVVQIPLMAQEEILSSSASDFRTAMVSKNSKPQA FT TAMHVGAIEIIIDSFASPDCNIVGAMLLVDTYHTNPENAVRSIFVAPFRGGRPIRVVTF FT PNTIVQIEPDMNSRFQLLSTTTNGDFVQGKDLAMVKVNVACAAVGLTSSYTPTPLLESG FT LQKDRGLIVEYFGRMSYVAHNVNQPQEKDLLEGNFSFDIKSLSRLEKVSSTKAQFVSGK FT TFKYDIIGAGSHSSEDFPEKGDQEKPKKIDARLRQRIDPQYNEVQAQMETNLFKLSLDD FT VETPKGSMLDLKISQSKIALPKNTVGGTILRSDLLANFLTEGNFRASVDLQRTHRIKGM FT IKMVATVGIPENTGIALACAMNSSFRGRASSDIYTICSQDCELWNPACTKAMTMSFNPN FT PCSDAWSLEFLKRTGFHCDIICVTGWTATPMQDVQVTIDWFISSQECVPRTYCVLNPQN FT PFVLNRWMGKLTFPQGTSRSVKRMPLSIGGGAGAKNAILMNMPNAVLSMWRYFVGDLVF FT EVSKMTSPYIKCTVSFFIAFGNLADDTINFEAFPHKLVQFGEIQEKVVLKFSQEEFLTA FT WSTQVRPATTLLADGCPYLYAMVHDSSVSTIPGDFVIGVKLTTINNMCAYGLNPGISGS FT RLLGTIPQSISQQTVWNQMATVRTPLNFDSSKQSFCQFSIDLLGGGILVDKTGDWITLI FT QNSPISNLLRVAAWKKGCLMVKIVMSGNAAVKRSDWASLVQVFLTNSNSTEHFDACKWT FT KSEPHSWELIFPIEVCGPNNGFEMWSSEWANQTSWHLSFLIDNPKQSTVFDILLGISQD FT FEIAGNTLMPAFSVPQATARSSENAESSA" FT CDS 773..3523 FT /codon_start=1 FT /product="small polyprotein 2" FT /note="carboxy co-terminal polyprotein; codes for the FT movement protein and the two coat proteins" FT /db_xref="GOA:Q8JUF3" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q8JUF3" FT /protein_id="AAM73717.1" FT /translation="MEVIRNRGIPADVLAKRAHEFEKHVAHESLKDQIPAVDKLYSTKV FT NKFAKIMNLRQSVVGDLKLLTDGKLYEGKHIPVSNISAGENHVVQIPLMAQEEILSSSA FT SDFRTAMVSKNSKPQATAMHVGAIEIIIDSFASPDCNIVGAMLLVDTYHTNPENAVRSI FT FVAPFRGGRPIRVVTFPNTIVQIEPDMNSRFQLLSTTTNGDFVQGKDLAMVKVNVACAA FT VGLTSSYTPTPLLESGLQKDRGLIVEYFGRMSYVAHNVNQPQEKDLLEGNFSFDIKSLS FT RLEKVSSTKAQFVSGKTFKYDIIGAGSHSSEDFPEKGDQEKPKKIDARLRQRIDPQYNE FT VQAQMETNLFKLSLDDVETPKGSMLDLKISQSKIALPKNTVGGTILRSDLLANFLTEGN FT FRASVDLQRTHRIKGMIKMVATVGIPENTGIALACAMNSSFRGRASSDIYTICSQDCEL FT WNPACTKAMTMSFNPNPCSDAWSLEFLKRTGFHCDIICVTGWTATPMQDVQVTIDWFIS FT SQECVPRTYCVLNPQNPFVLNRWMGKLTFPQGTSRSVKRMPLSIGGGAGAKNAILMNMP FT NAVLSMWRYFVGDLVFEVSKMTSPYIKCTVSFFIAFGNLADDTINFEAFPHKLVQFGEI FT QEKVVLKFSQEEFLTAWSTQVRPATTLLADGCPYLYAMVHDSSVSTIPGDFVIGVKLTT FT INNMCAYGLNPGISGSRLLGTIPQSISQQTVWNQMATVRTPLNFDSSKQSFCQFSIDLL FT GGGILVDKTGDWITLIQNSPISNLLRVAAWKKGCLMVKIVMSGNAAVKRSDWASLVQVF FT LTNSNSTEHFDACKWTKSEPHSWELIFPIEVCGPNNGFEMWSSEWANQTSWHLSFLIDN FT PKQSTVFDILLGISQDFEIAGNTLMPAFSVPQATARSSENAESSA" XX SQ Sequence 3688 BP; 1046 A; 653 C; 759 G; 1230 T; 0 other; tattaaaatt ttcataagat ttgaaatttt gataaaccgc gatcacaggt tgccgcacct 60 taaaaccgga aacaaaagca atcgttactt gattttaaga atttctcaat ttcttcctac 120 ttctttgtgt acgatttctc aagggaaaga aaatcactct ctgtgctggt cacagacttc 180 gtgaatcatt ttcttttcca ctcttagttt atttgctgaa cactctccta tttgatatag 240 gacttcgtgt cagatttaaa cttcttctgt ttctttctca gttctctgtt taatttcaag 300 ttcaagctgg tgaaattttg gattagtgct cccactctcc tatctggtat aggacttcgt 360 gggtagactt ttctatttct ctcctttctt tcactctctt cttctcactg atccgcattg 420 ccgttcaaag tggtcttatt tgaaaaacac ttgggcgttg gtgcaaatgt ttgcttcgtt 480 aattttctct ggagataaca ggctcactga gaaaacaatt tttacttgca gagatttgga 540 cattttggtt gtttattata caatagcaac ccaatttaga aaatttctac cgcattatat 600 taggtggcat ctgtatacct tgttgatcta cattctccca tcttttctca ctgctgaaat 660 taaatataag cggaatctga gtaatattca tatttccggc ttattttacg acggcagata 720 caaattctgg actaaacacg agaaaaatct tgctttgaca gaagaggaaa agatggaagt 780 gattagaaat agaggcattc ctgctgatgt tcttgcaaag cgagctcatg aatttgaaaa 840 acatgttgct catgaaagcc tcaaggatca aattcctgct gttgacaagt tgtattctac 900 taaggttaat aagtttgcaa aaattatgaa ccttagacaa agtgttgttg gtgatcttaa 960 acttcttact gatgggaagt tgtatgaggg taagcatatc cctgtatcta atattagtgc 1020 aggggaaaat catgtagttc aaataccctt aatggcacag gaggaaattc tgtcttctag 1080 tgcaagcgat ttcagaactg caatggtgag taaaaatagc aagcctcaag ctactgcaat 1140 gcatgtggga gctatagaaa ttatcattga tagtttcgca agtcctgact gcaacatagt 1200 tggtgcaatg cttttggttg atacttatca taccaatcct gaaaatgcag ttcgtagtat 1260 ttttgttgcg cctttcagag gcggaaggcc cattcgggtg gttacatttc cgaataccat 1320 tgtgcagatt gaaccagaca tgaattcaag gtttcagctt ttgagtacca ctaccaatgg 1380 tgattttgtt caaggaaaag atctcgcaat ggttaaagtt aatgtagcat gtgctgccgt 1440 tggcttgaca tcaagttata ctccaactcc attgttggaa tctggtttgc aaaaagacag 1500 agggttaatt gtggagtatt ttggaaggat gtcttacgtt gctcataacg ttaatcagcc 1560 ccaagagaaa gatttgttgg agggaaattt ttcctttgat attaaatctc tctctagatt 1620 ggaaaaggtt tcctctacaa aagcacaatt tgttagtgga aaaaccttca aatatgatat 1680 aattggtgct ggttcacatt cttcagaaga ttttcctgaa aagggagatc aagaaaaacc 1740 caaaaagatt gatgccagat tgagacaaag aatagatcct caatacaatg aggttcaggc 1800 tcagatggaa acaaatttgt ttaaattgtc tcttgatgat gttgaaactc ctaaaggttc 1860 catgttggat cttaaaattt ctcaatctaa aattgcactt cccaagaaca cagttggagg 1920 aaccattctg cgtagtgatc tattggcaaa ttttttgaca gagggcaatt ttagagcaag 1980 tgttgatttg cagcgcactc atcgtattaa aggaatgatt aaaatggtgg ccacagttgg 2040 tattcctgag aatacaggta tagcattggc ctgtgctatg aatagttctt ttagggggcg 2100 cgccagttct gatatttaca ccatctgctc tcaagactgt gaattatgga atcctgcttg 2160 cacaaaagca atgactatgt catttaatcc aaacccgtgt tctgatgcat ggagtttgga 2220 atttctgaag cgtactggat ttcattgtga tatcatttgt gtcactggat ggactgccac 2280 cccaatgcag gatgttcagg ttacaattga ttggtttatt tcctctcagg aatgtgttcc 2340 caggacctac tgtgttttaa atccacaaaa tccttttgtg ttaaataggt ggatgggaaa 2400 actgactttc ccccagggca cttcccggag tgttaagaga atgcctcttt ctataggggg 2460 aggagctggt gcaaagaatg ctattctcat gaatatgcca aatgctgttc tttcaatgtg 2520 gagatatttt gttggagatc tcgtctttga agtttctaag atgacttctc cctacattaa 2580 atgtacagtc tctttcttca tagcatttgg aaatttggct gatgatacca tcaattttga 2640 ggcttttccc cacaagctgg tgcagtttgg agagattcag gaaaaagttg tattgaaatt 2700 ttcacaagag gaatttctta cagcttggtc aactcaggtg cgtcctgcaa caactctgtt 2760 ggctgatggg tgtccatatt tgtatgctat ggtgcatgat agttcagtgt ctacaatacc 2820 aggtgatttt gtcattggtg ttaagttgac aaccataaac aatatgtgtg catacgggct 2880 taatcctggt atttcaggtt ctcgtctttt gggcaccatt cctcagtcca tttcacagca 2940 aactgtttgg aatcaaatgg caacagtgag aacaccattg aattttgatt ctagcaagca 3000 gagcttttgt caattttcta ttgaccttct cggtggagga attttagtgg acaaaactgg 3060 agattggatc acacttatac aaaattctcc aattagtaac ttgttgagag ttgctgcttg 3120 gaagaaaggc tgtttaatgg tcaagattgt gatgtctggg aatgcagcag tcaaaaggag 3180 tgattgggcc tcattggtac aagtgttttt aacaaacagc aacagtacag agcattttga 3240 tgcatgtaag tggacaaaat cagaaccaca ttcctgggaa ttgatcttcc caatagaggt 3300 atgtggtcct aataatggtt ttgaaatgtg gagttctgag tgggcaaatc aaacttcatg 3360 gcatttgagt ttccttattg acaatcccaa acagtctaca gtttttgata ttctcttggg 3420 aatctctcaa gattttgaaa ttgctggtaa tactcttatg ccagcttttt ctgttccaca 3480 agctactgcc agatcttctg aaaatgcgga atcctctgca tgatctggaa tttgtgtttc 3540 cttttgcttg ttcgtttgtt taatttaata aaggaaatta ggcatgaccc tcttgttgag 3600 tatgctctgc ctatttgaaa atttccacac ctcttttaat tgtcgtaatg atgtgtgaag 3660 tgtgtgttat tttaaaaaaa aaaaaaaa 3688 //