ID AF332998; SV 3; linear; genomic RNA; STD; VRL; 2257 BP. XX AC AF332998; XX DT 05-FEB-2002 (Rel. 70, Created) DT 28-DEC-2004 (Rel. 82, Last updated, Version 5) XX DE Alfalfa mosaic virus movement protein and coat protein genes, complete cds; DE and unknown genes. XX KW . XX OS Alfalfa mosaic virus OC Viruses; Riboviria; Bromoviridae; Alfamovirus. XX RN [1] RP 1-2257 RX DOI; 10.1007/s11262-004-7433-0. RX PUBMED; 15550770. RA Jayasena K.W., Randles J.W.; RT "A short insert in the leader sequence of RNA 3L, a long variant of Alfalfa RT mosaic virus RNA3, introduces two unidentified reading frames"; RL Virus Genes 29(3):311-316(2004). XX RN [2] RP 1-2257 RA Jayasena K.W., Randles J.W., Torok V.A.; RT "A new membrane-binding gene encoded by the alfalfa mosaic virus genome"; RL Unpublished. XX RN [3] RP 1-2257 RA Jayasena K.W., Randles J.W., Torok V.A.; RT ; RL Submitted (02-JAN-2001) to the INSDC. RL Plant Pathology, AGWEST, Albany Hwy, Albany, WA 6330, Australia XX RN [4] RC Sequence update by submitter RP 1-2257 RA Jayasena K.W., Randles J.W., Torok V.A.; RT ; RL Submitted (27-NOV-2003) to the INSDC. RL Plant Pathology, AGWEST, Albany Hwy, Albany, WA 6330, Australia XX RN [5] RC Sequence update by submitter RP 1-2257 RA Jayasena K.W., Randles J.W., Torok V.A.; RT ; RL Submitted (02-DEC-2003) to the INSDC. RL Plant Pathology, AGWEST, Albany Hwy, Albany, WA 6330, Australia XX DR MD5; 25ac12352167ed26af0972d4811687a6. DR RFAM; RF00252; Alfamo_CPB. XX CC On Dec 2, 2003 this sequence version replaced gi:38565479. XX FH Key Location/Qualifiers FH FT source 1..2257 FT /organism="Alfalfa mosaic virus" FT /segment="RNA 3L" FT /strain="N20" FT /mol_type="genomic RNA" FT /country="Australia" FT /db_xref="taxon:12321" FT CDS 216..281 FT /codon_start=1 FT /product="unknown" FT /db_xref="UniProtKB/TrEMBL:Q8V5Y1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAL73141.1" FT /translation="MENTKNKCLEFVSTQLTLFTV" FT CDS 236..301 FT /codon_start=1 FT /product="unknown" FT /db_xref="UniProtKB/TrEMBL:Q8V5Y0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAL73142.1" FT /translation="MPRVRFNSINAFYSVIRTFRK" FT CDS 463..1365 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:Q8V5X9" FT /db_xref="InterPro:IPR002538" FT /db_xref="UniProtKB/TrEMBL:Q8V5X9" FT /protein_id="AAL73140.2" FT /translation="MENTKTNASSSGMSSSSSFSVSYAEEMLLADEVSKINSMSILGPN FT QLKLCTQLVLSNGAAPVVLSLVSKEKKSILNRMLPKIGQRMYVHHSAIYLLYMPNILKS FT SSGSITLKLFNEATGELVDVDTDHDATQACIFAGRYPRSILAKDAAKGHDLKLVVHAVA FT STNMNSAVGVLYPIWEDELSRKQILERGADFLKFPIAKTEPVRDLLNAGKLTDFVLNRT FT RLGVGSKSDPSPVLLEPRAKIAGKAKTLFIPEGPSVPSTTINGMAPTVRIDAGSPKGLG FT VPKGFTYESFIKDEILPDH" FT CDS 1415..2080 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q8V5X8" FT /db_xref="UniProtKB/TrEMBL:Q8V5X8" FT /protein_id="AAL73139.1" FT /translation="MSSSQKKAGGKAGKPTKRSQNYAALRKAQLPKPPALKVPVVKPTN FT TILPQTGCVWQSLGTPLSLSSFNGLGARFLYSFLKDFVGPRILEEDLNYRMVFSITPSH FT AGTFCLTDDVTTEDGRAVAHGNPMQEFPHGAFHANEKFGFELVFTAPTHAGMQNQNFKH FT SYAVALCLDFDAQPEGSKNPSFRFNEVWVERKAFPRAGPLRSLITVGLFDEADDLDRH" XX SQ Sequence 2257 BP; 609 A; 480 C; 492 G; 676 T; 0 other; tccaattcaa ctcaattaac gcttttacag tgtaattcgt acttttcgta agtaagtttc 60 tgtaaaagcg tttcttgttt taatttggtc taacacgtaa ttcgtactct tcgtgagtaa 120 gttgtgttag ccatacctat cctttaaatt tctgtcaatt taaaagaaaa tcattcccat 180 tcgcgtaatt cgtactcttc gtgagtaagt tgcaaatgga gaatacaaaa aacaaatgcc 240 tcgagttcgt ttcaactcaa ttaacgcttt ttacagtgta attcgtactt ttcgtaagta 300 agtttctgta aaagcgtttc ttgttttaat ttggtctaac acgtaattcg tactcttcgt 360 gagtaagttg tgttagccat acctatcctt taaatttctg tcaatttaaa aagaaaatca 420 ttcccattcg cgtaattcgt actcttcgtg agtaagttgc aaatggagaa tacaaaaaca 480 aatgcctcga gttctggaat gtcttcttct tctagctttt cagtgtctta tgctgaggaa 540 atgttactag ctgatgaagt ttcaaaaatt aactcaatgt cgattctggg tcccaatcag 600 ctaaagctct gcactcaatt ggtgctgtct aatggagcag cgccagtagt tttaagcctt 660 gtgtcaaagg aaaagaaatc gattctgaat cgtatgcttc ctaagattgg acagaggatg 720 tacgtccatc actcggctat ctaccttctt tatatgccaa acatactgaa aagttcttca 780 gggagcatca ccttgaaact ttttaatgaa gctacaggag agttagtgga tgttgacacc 840 gaccatgatg ctacccaggc atgtatattt gctggacgtt acccccggag tattctggcg 900 aaagatgcag cgaaaggaca cgacttaaaa ttagtcgtcc acgctgttgc ttcgaccaat 960 atgaactctg ctgtcggtgt tctatacccc atctgggaag atgagttaag cagaaagcag 1020 atcctcgaaa ggggtgccga tttcctaaag tttccaattg ctaagaccga accagtccgc 1080 gatctcttaa atgctgggaa attgacggat tttgttctta ataggacaag attaggtgtg 1140 gggtcaaaga gtgatcccag tccggttctt ttagaaccaa gagctaagat tgccgggaag 1200 gcaaagacac tttttattcc cgaaggtcct agtgttccta gtaccactat aaatggtatg 1260 gcaccaacgg tgcgtataga tgccggttct ccaaagggtc ttggagtccc gaaagggttt 1320 acatatgaaa gttttattaa agatgaaata ttacctgatc attgatcggt aatgggccgt 1380 ttttattttt aattttcttt caaatacttc catcatgagt tcttcacaaa agaaagctgg 1440 tgggaaagct ggtaaaccta ctaaacgttc tcagaactat gctgctttac gcaaagctca 1500 actgccgaag cctccggcgt tgaaagtccc ggttgtaaaa ccgacgaata ctatactgcc 1560 acagacgggc tgcgtgtggc aaagcctcgg gacccctctg agtctgagct cttttaatgg 1620 gctcggcgcg agattcctct acagttttct gaaggatttc gtgggacctc ggatcctcga 1680 agaggatctg aattacagga tggtgttttc cataacaccg tcccatgccg gcaccttttg 1740 tctcactgat gacgtgacga ctgaggatgg tagggccgtt gcgcatggta atcccatgca 1800 agaatttcct catggcgcgt ttcacgccaa tgagaagttc gggtttgagt tggtcttcac 1860 agctcctacc catgcgggaa tgcaaaatca aaatttcaag cattcctatg ccgtagccct 1920 ctgtctggac ttcgatgcgc agcctgaggg atctaaaaat ccctcattcc gattcaacga 1980 agtttgggtc gagagaaagg cgttcccgcg agcagggccc ctccgcagtt tgattactgt 2040 ggggctgttc gacgaagctg acgatcttga tcgtcattga tttaccccat taatttggga 2100 tgctaaagtc atttaatgct gacctccact gggtggatta aggtcaaggt atgaagtcct 2160 attcgctcct gataggatcg acttcatatt gcttatacta tgtaacgcac atatataaat 2220 gctcatgcaa aactgcatga atgcccctaa gggatgc 2257 //