ID   AB698494; SV 1; linear; genomic RNA; STD; VRL; 2028 BP.
XX
AC   AB698494;
XX
DT   17-AUG-2012 (Rel. 113, Created)
DT   20-DEC-2012 (Rel. 115, Last updated, Version 2)
XX
DE   Rosellinia necatrix partitivirus 5 genomic RNA, segment: RNA 1, complete
DE   sequence.
XX
KW   .
XX
OS   Rosellinia necatrix partitivirus 5
OC   Viruses; Riboviria; Partitiviridae; unclassified Partitiviridae.
XX
RN   [1]
RP   1-2028
RA   Yaegashi H., Kanematsu S.;
RT   ;
RL   Submitted (13-FEB-2012) to the INSDC.
RL   Contact:Hajime Yaegashi NARO, National Institute of Fruit Tree Science,
RL   Apple Research Station; Shimokuriyagawa, Nabeyasiki 92-24, Morioka, Iwate
RL   0200123, Japan
XX
RN   [2]
RC   DOI:10.1111/j.1574-6941.2012.01454.x
RX   PUBMED; 22808916.
RA   Yaegashi H., Nakamura H., Sawahata T., Sasaki A., Iwanami Y., Ito T.,
RA   Kanematsu S.;
RT   "Appearance of mycovirus-like double-stranded RNAs in the white root rot
RT   fungus, Rosellinia necatrix, in an apple orchard";
RL   FEMS Microbiol. Ecol. 83(1):49-62(2013).
XX
DR   MD5; 0308fe4484a89f9291b6c0bc1f48f297.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2028
FT                   /organism="Rosellinia necatrix partitivirus 5"
FT                   /segment="RNA 1"
FT                   /host="Rosellinia necatrix W1028"
FT                   /strain="5-W1028/S4"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Nagano, Suzaka, Nagano Fruit Tree
FT                   Experiment Station"
FT                   /collection_date="Jun-2009"
FT                   /db_xref="taxon:1148494"
FT   CDS             16..1959
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA-polymerase"
FT                   /db_xref="GOA:J7MAN0"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="UniProtKB/TrEMBL:J7MAN0"
FT                   /protein_id="BAM36403.1"
FT                   /translation="MFFKHTMHRFNKRTTTLRPTKHETPHSNIRYIGTPKQRYQKPDYR
FT                   QELKEEAERERAEWLERQMRKIYFDEEVNQVLTNRRSEYSDERLIADFKESDQPLHPIP
FT                   RDSHYDRAVKMTAEHFRPARELNPVHFPDLRYYPWPLSISAETPWTSEGFRFVPAFRDL
FT                   DSETTKPKFGGAKQRAEKWKRFAHFVYRNFGSGSINVLQYLKLKQRFGLIDNSRTTFHN
FT                   LYDEMFQYNRGRVHNIKDGEGAFWKDGKPQPYFWNMLHARSHVVAQDEPDKIRAVFGAT
FT                   KLLLMIELMFIWPLQASYLNGGSGRMLWGYEMTRGGWKKLYNEMHKRQPFNTILGIDWS
FT                   KFDKRLLHELIDQVHQIWRSYFSFDRYEPTSKYPNAKTDPARLERLWRWMCHAIRRTPI
FT                   MLPNGELWEWFWNGFGSGYQQTQLMDTFCNCIMVYTCLSALGINIESDRFWSKFQGDDS
FT                   LIGMLERMYLIYGNHFLDMLADSAMHYFNAKLNVKKSDIQDRVTGMTVLSYSNKFGICS
FT                   RTEEDLLRHLYFPERERDYAKLAASAVGLAIAAGGEHERFHRLCEKIFVHITKKWNLRP
FT                   KWKAIQWMIRAHHFGSEEELYRAKFPDRLKLMSEVYAYKERSESEKQRQWPTYAKEEGD
FT                   FYFLEPVQPASV"
XX
SQ   Sequence 2028 BP; 691 A; 428 C; 455 G; 454 T; 0 other;
     agaactttta atcgaatgtt ctttaagcac acaatgcatc gattcaacaa acgaacaaca        60
     acactaagac ctacgaaaca cgaaacgcct cacagcaaca tcagatacat cggaacaccg       120
     aagcaacgat atcagaagcc tgattacaga caagaactca aggaagaagc ggaacgagag       180
     agagccgaat ggctagagcg tcagatgaga aagatatatt tcgacgaaga agtaaatcaa       240
     gtactcacaa accgacgttc agaatactca gacgaacgcc tgatcgcaga ctttaaagaa       300
     agcgaccagc cattgcaccc tataccaagg gactcgcatt acgacagagc agtcaagatg       360
     accgcagagc attttcgccc agcgcgagaa ctcaaccctg tccacttccc ggatctaagg       420
     tattaccctt ggccattgag catatctgcc gagacaccct ggacctcaga aggattcaga       480
     tttgtcccag catttagaga cctggactca gagactacca aacccaaatt tggcggagct       540
     aaacaaagag cggagaaatg gaaacgtttt gcgcattttg tctaccgtaa ttttggatct       600
     ggttcgataa acgtactaca gtacctgaag ctgaaacaga gatttggact gatcgacaac       660
     agcaggacaa cttttcacaa tttgtatgac gaaatgtttc aatacaatcg cggaagagtg       720
     cacaacatca aagatggtga aggtgctttt tggaaagacg ggaaaccaca accctacttc       780
     tggaatatgt tacatgctag atcacacgta gtagcacaag acgagccgga caagattcgc       840
     gcagtatttg gagcaacgaa actacttttg atgatagaac taatgttcat ctggccgctg       900
     caagcgagct atttgaatgg aggatctggc cgaatgttat ggggatacga aatgacgaga       960
     ggaggatgga agaagcttta caatgaaatg cataagcgac agccgttcaa cacgatacta      1020
     ggaatagact ggtcaaaatt tgacaaacgt ctacttcacg agttgatcga ccaagtacat      1080
     caaatatgga ggagctactt tagctttgac cgatatgaac ctacgtctaa gtacccaaac      1140
     gcaaagaccg acccagctag actggagcgg ctatggagat ggatgtgtca tgcaatcaga      1200
     cgaacgccaa tcatgttacc aaacggagaa ctttgggaat ggttttggaa tggattcgga      1260
     tctggatacc agcagacgca actcatggac acattttgca attgcataat ggtctacaca      1320
     tgcttgtcag cactcggaat taatatcgag agcgaccgct tttggagcaa gtttcaagga      1380
     gatgattcct tgattggaat gcttgagcgg atgtacctta tctacggaaa tcattttctg      1440
     gatatgttag cagatagcgc aatgcactac ttcaacgcca agttgaatgt gaaaaagagt      1500
     gacatccaag atagagtgac cggaatgacg gtactcagct attctaataa attcggaata      1560
     tgttcacgaa cagaggagga cttattacga catctttatt tcccagaacg agaacgagac      1620
     tacgcaaagc ttgctgcatc agcagttggc ttagccatcg cagcaggagg agagcacgaa      1680
     cgctttcacc ggctatgtga gaaaatattc gttcatatca ctaagaagtg gaatctacgt      1740
     ccaaaatgga aagcaattca atggatgatt agagcccatc acttcggcag tgaagaggaa      1800
     ttataccgag caaaattccc ggaccgactg aagcttatgt ctgaagttta cgcatacaaa      1860
     gaacgtagcg aatcagagaa gcaacgacag tggccgactt acgcaaaaga agaaggagat      1920
     ttttattttc ttgagcctgt gcaaccagca tcagtttgag attttttctg caccttttaa      1980
     atcaacgcaa ataaaaaaaa aaaatttaaa atgtaaaaaa acaaaaaa                   2028
//