ID AB030940; SV 1; linear; genomic RNA; STD; VRL; 6812 BP. XX AC AB030940; XX DT 18-FEB-2000 (Rel. 62, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 3) XX DE Apple latent spherical virus RNA1 for 235K polyprotein, complete cds. XX KW . XX OS Apple latent spherical virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Cheravirus. XX RN [1] RP 1-6812 RA Yoshikawa N., Li C.; RT ; RL Submitted (09-AUG-1999) to the INSDC. RL Nobuyuki Yoshikawa, Iwate University, Faculty of Agriculture; Ueda 3-18-8, RL Morioka, Iwate 020-8550, Japan (E-mail:yoshikawa@iwate-u.ac.jp, RL Tel:81-19-621-6150) XX RN [2] RX PUBMED; 10644854. RA Li C., Yoshikawa N., Takahashi T., Ito T., Yoshida K., Koganezawa H.; RT "Nucleotide sequence and genome organization of apple latent spherical RT virus: a new virus classified into the family Comoviridae"; RL J. Gen. Virol. 81(Pt 2):541-547(2000). XX DR MD5; e90f36b7a998b35c9bd8f5c7253f5948. DR EuropePMC; PMC2861173; 20229114. DR EuropePMC; PMC3123315; 21658286. XX FH Key Location/Qualifiers FH FT source 1..6812 FT /organism="Apple latent spherical virus" FT /segment="1" FT /mol_type="genomic RNA" FT /db_xref="taxon:101688" FT CDS 385..6624 FT /codon_start=1 FT /product="235K polyprotein" FT /db_xref="GOA:Q9JGP2" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:Q9JGP2" FT /protein_id="BAA90870.1" FT /translation="MDEGSCCPRSQIQTRSQREARRKAWEASEEAAWVRDYGREPTSPL FT SVWEGTPELLAMEHAYLAKQGDKRICAHLRRQALRAAYKARCQKRAFKVFQEECEFFRL FT PVHIVDKIQIPGQASPVPESVSLGGGVKTATSKRQVKTRRSFSSFLPKEEFSFVLGPCP FT TSSPEVTPTSTPSTTPPSSPRASSPRTPLPQVKEVTTQGITLCSHGPACQEHFCFGFLD FT LKDEFHASTYLKWMLGTQLPGSIFCFDLQVSSYLEHCTDTMEAIDLWWHVMDRYVRNYR FT ATKYVTKDNYLTKASIAIDTAPKEFINKCKLLTKRAKHRNLSKKESYLLKRNERDSKYW FT DAFIALRTNTKEGQGPIDWVKAGYRKCKEYYDNTFSKFVNQIMQSLNPLTMILGPFKSA FT FWECVSNLKDKCVGMINDHWLAFAAGSTLVLTLIFLFAMICICKVFVYLLSTLGIVGCT FT VTFLVTSLIVIFFLFNGFLEQAADIQLCELVGADFLNFLNQNQNIAPIAATMADIKEEA FT LRGQGLQWCFTALYKLISRLIPGGAKEAAIMFNSVGNISRSASHAKDFFVNMKEMTTSW FT IDALSDALALLGDDSVTAMHTLKHLCENDFLEWAKRVERYAGDTYDSMILNPADRLRII FT RELVDQQVGFQKAFFNPRIASKAPRLMLTEFQRLSTMLRDCHSALSRAALFDMQRVPPF FT WIHLYSENGGTGKSMAMMPLGNYLLDSIEEPKTHRFVTRNVASRFLNGYLHQPCFLMDE FT FGAAPKTDYMDEVTMLDLVSPNPLTLNMAALGDKNIMFTSKLIISTANRRLAHPDVKLG FT ANLDGFLRRRHILAEVVLAQGKPYFHEFILLKARTEQKIYLDQALREVASPIHLSPAEF FT YAVCAEQFVNFLNQQGNALIEQQGVSYVRSDDFSFLKDYLQYKMGLDFQQCEIERIVTD FT YSLSIKNQTIFPAEHEHIFSRWRAELEALSLSELITMLDKHVTETFVYTLIKENHSNVV FT MSNLTPYECLIYSFCKDKYKKETDATFSSLPEEEVKQPWLAEFLSFTARLCLNVPKWVT FT LVLALCAFCLVGYVLIKFAIGLFTGACTIFSVLAFSSLSAQGPEDSPGFENARKTAGVK FT VHFVKTSFQPSDWKGINVKPSGFNWGDVADDDDAIPLWGQGPDQNQNVLNLLKHQVVLI FT AEHSKVVYNAIALGNRNFLFTKHVWDLMPTCNYGLFGYAIAKNKIYINPNVRPAIQLKN FT RDLVVVQLPDSVPPFSALPKDIFLSNLAEAPKVANAALVVSEPLYEKRSVAQLQQKIYP FT FENLPQIHSRDTYSCGSLGSKPMPACYSYTFDTFAGLCTSPLISMDGGRCVLLGLHVAG FT DKSKMGYAQIVTLEDFSDINFSEKVGQGPEQMYIPTARSESFGSVCLLGKWTGPKPYFL FT ENSSLTPSLIHDCIDIDMTTEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSFDE FT DEELFEDALDRVFSEIPMFTCEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPG FT VTGKTWLFAGSPGDWHIVPNSLLANELNVKELNLSKNIFEPVIGIDFPKDEKVDSSKVY FT IKQKTRLFTILPVDYNILVRKYFLSFVSQLMALHNEVPTKVGIDPISNEWSILCHSLHS FT KGTNWFNGDYSRFDGITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMD FT MCSTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLY FT SFRTLVSYAVYGDDNLISVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYP FT IEKVDFLKRRFTTLQGHIVAPLNTVNITERLHWVRKGLGDADATLENCKSALFEALFHG FT ELYYNDLRGKIEKACKVKGLPLIVPDYQDALSLFLTGGSYAKAIQAIAMNLPDRISLYK FT SEFYSVQIYPQIFYVTNERNVTLQKLLETTTLRNICYVSRNYESRSSSRGLFTLKGEGW FT TPAALKARLSVYKAMAKPVYFVDEANDGLAMFYCLDYAFRVCGLTRSQIAKILNAVFGG FT NPEVCQRIFQFFSQVEPTNKYIPPNQRR" XX SQ Sequence 6812 BP; 1801 A; 1344 C; 1383 G; 2284 T; 0 other; tccgttttag agcttgtgag ttgttattac gttttgttgt ttgaatctct gttttgttac 60 tctgatttcc ttcacgtttg caccttacac tctctaccga taaacattat catcttttat 120 tttgaatttt atttgaaaaa tttttatatt ttcaatgtca atcactactc ctgtagtgat 180 tcgctttggg agttttgact cccctgctgc ggcacagatt gccgatacta aggaggagga 240 aactcctctc tctcgccttg cagctttaaa tcgcaaggct caaattgctg ctcgttcaag 300 agtagcagct gctgcggcac agtatgccga agagcaggag acactagttc tcactgctca 360 atccatgagg gatgctctcc ctttatggat gaggggtctt gttgcccccg ctcccaaatc 420 caaacgcgct ctcaacgcga ggcgcgccgt aaggcgtggg aagcctctga ggaggctgcc 480 tgggttcgtg actacggtcg tgaacccact tcccctctct ctgtttggga gggcactcct 540 gagctccttg ctatggagca tgcttacctt gccaagcaag gtgataagcg catctgcgct 600 catttgcgca gacaggctct gcgggctgcc tacaaagccc gatgtcaaaa gagggccttt 660 aaggtcttcc aggaagaatg tgaattcttc cgtctccctg tccacattgt ggacaaaatc 720 caaatcccag ggcaggctag ccccgtgcca gagagcgtat ctctgggtgg cggtgttaaa 780 accgctactt ctaagcgcca agtgaaaact cggcgctctt tctcttcttt cctcccaaag 840 gaggaatttt cctttgtgtt gggcccttgc ccaacatctt cccctgaggt tactccaacc 900 tcaacccctt caaccacccc cccttcttct ccacgggcat cttcgcccag aacccccttg 960 cctcaggtta aagaggtgac cacacagggt attactctgt gttctcatgg gcctgcttgt 1020 caggaacatt tttgttttgg ttttctagat ctcaaagatg agtttcatgc ttccacttat 1080 ttaaagtgga tgcttggaac ccaactacct gggtctattt tttgttttga cctccaagtt 1140 tctagttatc tagagcactg tacagataca atggaggcta ttgatctgtg gtggcatgtt 1200 atggatcgtt atgtgcgtaa ttacagagct accaaatatg tcactaaaga caattactta 1260 acaaaggcta gcattgctat tgatactgct cctaaagagt ttatcaataa gtgtaaattg 1320 ttgaccaagc gtgcgaagca tcgaaatttg tcaaagaaag aatcttatct tcttaaaaga 1380 aatgaaagag attctaaata ttgggatgct tttatagcct tacgtactaa tactaaagaa 1440 ggtcaaggac ctatagattg ggtgaaggct ggttatcgta aatgtaaaga atactatgat 1500 aacaccttct ccaaatttgt aaatcaaatt atgcaatccc ttaatcctct aactatgatc 1560 ctaggaccgt ttaagtctgc tttttgggaa tgcgtttcaa atctcaaaga taaatgtgtt 1620 ggtatgataa acgatcattg gcttgctttt gcagcaggtt caacacttgt tttgaccctc 1680 atatttcttt ttgcgatgat ttgcatttgt aaagtttttg tatatttact atctactcta 1740 ggtatagttg ggtgtacagt tacttttctt gtaacttctt taatagttat tttcttttta 1800 tttaatggtt ttctcgaaca agctgcagat attcaacttt gtgagcttgt tggagctgat 1860 tttttaaatt ttttgaacca aaatcaaaac atcgctccta ttgctgccac aatggctgat 1920 attaaagagg aagctctcag agggcaaggg ttgcaatggt gttttacagc tttgtataaa 1980 ttaatttcta gattaattcc tggtggagct aaggaagctg ccatcatgtt taatagcgta 2040 ggtaatatca gtcgaagcgc aagtcatgcc aaggatttct ttgtaaatat gaaggaaatg 2100 actacttctt ggattgacgc cctctctgat gccctggctc ttctaggaga tgactctgtg 2160 actgctatgc acacattaaa gcatctctgt gagaatgatt tcttggaatg ggctaagaga 2220 gttgagcgct atgcaggtga tacatatgat tctatgattt tgaatcctgc agatcgactt 2280 aggataatta gggaattagt tgaccaacaa gtgggctttc aaaaagcctt ctttaacccc 2340 agaatagctt caaaggcacc tagattgatg ctcactgaat ttcagcgctt atcaactatg 2400 ttgagagatt gccacagtgc actttctcga gctgccctct ttgatatgca aagagttcct 2460 cccttttgga tacatttgta ttcagagaat ggcggcacag gaaagtccat ggcaatgatg 2520 cctttgggta attatttgtt agattctatt gaggaaccta agacccatag attcgttact 2580 aggaatgtag cctctcgatt tttgaatggc taccttcacc aaccttgttt cctcatggac 2640 gagtttggtg cagctcctaa gacggactat atggacgaag tcactatgtt ggatctcgtt 2700 tctcctaacc ctttaacgtt gaacatggca gctcttggtg acaagaatat catgttcact 2760 tcaaaattaa ttatttcaac tgctaatcgt aggctagctc accctgatgt aaaacttggg 2820 gctaatttag atggctttct cagaagacgc cacattttgg ctgaggtggt gttggctcaa 2880 gggaagccat attttcatga atttattctt ttgaaagcgc gaactgagca gaaaatttat 2940 ttggatcaag cattgcgaga agttgcaagc cccatccatt taagtcctgc tgaattttat 3000 gcagtttgcg ctgagcaatt tgtaaatttt ttaaatcaac aagggaatgc tctcattgaa 3060 cagcagggag tttcctatgt tagatctgac gatttttctt ttctcaagga ttatttgcag 3120 tataagatgg gtcttgattt tcaacaatgt gaaatagaga gaatagttac tgattattct 3180 ctctctatta aaaatcaaac tatctttcca gctgagcatg aacatatttt ctccagatgg 3240 agggctgaat tagaagcatt atccttgtct gaactaatta ccatgctcga taagcatgtt 3300 accgaaactt ttgtatatac tctaattaaa gagaatcact caaatgtggt tatgtctaac 3360 ctaacacctt acgagtgctt aatttattct ttttgtaaag ataagtataa gaaagaaact 3420 gatgcaacct tctcttctct tcctgaagag gaagttaagc agccttggct tgcagaattt 3480 ctttcattta cggcaaggct atgtctcaat gtgcccaaat gggtcacatt ggtcctagcc 3540 ttgtgtgctt tttgccttgt aggttatgta ctaattaaat ttgctatagg tttgtttaca 3600 ggtgcttgta caatttttag tgttttagct ttttcctctt tgtctgctca gggtcctgag 3660 gattctcctg gattcgaaaa cgctaggaaa actgctgggg ttaaggtgca tttcgttaaa 3720 acatccttcc aaccttctga ctggaagggg attaacgtta agccctctgg atttaattgg 3780 ggggacgttg ctgatgacga tgatgctatc cctttgtggg gtcaagggcc tgatcagaat 3840 caaaacgttc tcaatctttt gaaacaccaa gttgttttaa tagcagagca ttccaaggtt 3900 gtatataatg ctatagccct tggaaataga aattttttgt ttactaaaca cgtttgggat 3960 ctcatgccaa cctgtaatta tggtttattc gggtatgcga ttgctaaaaa taaaatatac 4020 attaatccta atgttagacc agccattcaa ttaaaaaata gagatttggt tgttgtacag 4080 ttgcctgatt ctgttcctcc cttctcagcc ttacctaagg atatttttct aagtaactta 4140 gctgaagcac ctaaggttgc taacgctgct cttgttgtat cagagccatt gtacgagaaa 4200 cgttcagtgg ctcaactaca acaaaagatt tacccttttg agaacctacc ccaaattcat 4260 agtagagaca cttactcttg tgggtctttg ggctcaaagc ctatgcctgc ctgttattct 4320 tatacttttg atacttttgc gggcttatgc acttcacctc ttatttctat ggatggcggc 4380 aggtgcgttt tactaggttt acatgtagct ggagataaaa gtaagatggg gtatgcacag 4440 atagttaccc tggaagactt ctccgatatt aacttttctg agaaggttgg acaaggaccc 4500 gagcaaatgt atataccaac tgctcgatct gaatcctttg gatcagtctg tcttcttggg 4560 aaatggactg gccctaagcc ttatttttta gagaatagtt ctttaactcc ctctctaatt 4620 catgactgta tagatataga catgacaacg gagcctgcta ttctttctaa gaaagatccc 4680 agacttcaat acactaacaa taaagatttt gatccttttc tctcaggtat gggaaagtat 4740 gctgttgagg ctcactcctt tgatgaagat gaagaattgt ttgaggatgc tctagatcga 4800 gttttctcag agatacctat gtttacctgt gaagatttat ctaatgatca ggtatgcaat 4860 ggtatagagg acgatgatta tgctgaagga ttggttatgc agactgctga aggttacccc 4920 ttctgcacta tgcggccccc aggagtcaca ggaaagacgt ggctttttgc gggatcacca 4980 ggtgattggc acatagtccc caattctctt cttgctaacg aacttaatgt caaagagttg 5040 aaccttagca agaatatttt tgaaccagtg ataggtatag attttcccaa ggatgagaaa 5100 gttgattctt ctaaagtgta cataaaacaa aaaactcgac tttttactat cctacctgtt 5160 gattataata ttttagttag gaaatatttt ctttcttttg tttcacaact tatggccctc 5220 cataatgaag ttcctacaaa ggtaggtatt gatccaattt ctaatgaatg gtctattctt 5280 tgtcattctc ttcactcaaa aggaaccaat tggttcaacg gagattattc cagatttgat 5340 ggaataacac ctcgtaatgt gcttcagggc attgtgaaga gaatttcgcg tagatatgct 5400 aacaagagtt cttttgctat aacagatcct acactttcta tcaatggtga tcttgctaga 5460 tcccttttga tggatatgtg tagcactcga tatgggctaa ctaatgggga cctttggtat 5520 gtcacttctg gtataccttc aggatttccc ttaaccgtta tagttaattc tttagttaat 5580 tctttctttg tgcactttgc ttatatgaag cttcattctt ctgaagtgca caaggctttg 5640 tatcctcttt attcttttag aacccttgta tcatatgctg tttatgggga tgataatcta 5700 atttctgtac atgacacaat taaagatact tttaatttag ttactatatc taacttattg 5760 ttggagcatg gtgtgactct taagaatgga gccgataaaa atgaggaaat tttatctcca 5820 ttctatccta tagagaaggt ggattttctc aagagacgat tcaccacttt acaaggacat 5880 attgttgctc cacttaacac tgttaatata actgagcgct tgcactgggt tcgtaagggc 5940 ctaggtgatg ctgatgccac acttgagaac tgtaaatcag ctctctttga agctttattt 6000 catggagagc tgtattacaa tgatcttcga ggcaaaattg aaaaagcttg taaagtgaag 6060 ggccttcctt tgatagtccc agattaccaa gacgctcttt ctttattttt aactggaggc 6120 tcatatgcta aggctattca ggctatagcg atgaatctcc ctgatagaat ctctctgtac 6180 aaatctgaat tctatagtgt acaaatatat cctcaaattt tttatgtgac caatgagaga 6240 aatgtcacac ttcagaaatt gctggagacc actactctcc gtaacatttg ttatgtttct 6300 aggaactacg agtctaggag cagttctagg ggtcttttca ctcttaaggg tgaaggttgg 6360 actccagctg ctttgaaagc tcgtcttagt gtgtacaaag ctatggccaa acctgtttac 6420 ttcgtagatg aggctaatga tggtttggct atgttttatt gcttagatta tgcttttcgt 6480 gtttgtggtt taacccggag tcaaattgca aaaattctta atgcagtttt tggtggtaac 6540 cccgaagtct gccaaagaat tttccaattt ttctctcaag tcgagccaac caataagtac 6600 attcctccca atcaaaggag gtaatttgtt tggtctttct tccttctttt ctttctttct 6660 ttcttttgaa ctagtttgtt ctcgtgatcc ttggatccgt taaggtttct tgctggttct 6720 tccttaagat gagaacatga accagtctag ttctttttgt ttgctgttta ttttatttca 6780 gtgtgtttga aaagagtcgg atagtccaat cc 6812 //