ID AB021265; SV 1; linear; genomic DNA; STD; PLN; 7405 BP. XX AC AB021265; XX DT 04-JUN-1999 (Rel. 59, Created) DT 23-DEC-2010 (Rel. 107, Last updated, Version 8) XX DE Arabidopsis thaliana copia-like retrotransposon AtRE1 gene for polyprotein, DE complete cds, strain Landsberg erecta. XX KW copia-like retrotransposon AtRE1 polyprotein. XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. XX RN [1] RP 1-7405 RA Kuwahara A., Kato A., Komeda Y.; RT ; RL Submitted (16-DEC-1998) to the INSDC. RL Contact:Ayuko Kuwahara Hokkaido University, Division of Biological RL Sciences, Graduate School of Science; Kita 10, Nishi 8, Kitaku, Sapporo, RL Hokkaido 060-0810, Japan XX RN [2] RX DOI; 10.1016/S0378-1119(99)00565-X. RX PUBMED; 10689195. RA Kuwahara A., Kato A., Komeda Y.; RT "Isolation and characterization of copia-type retrotransposons in RT Arabidopsis thaliana"; RL Gene 244(1-2):127-136(2000). XX DR MD5; 3465153990115aa1529651548d6a1713. XX FH Key Location/Qualifiers FH FT source 1..7405 FT /organism="Arabidopsis thaliana" FT /ecotype="Landsberg erecta" FT /mol_type="genomic DNA" FT /db_xref="taxon:3702" FT mobile_element 1..7405 FT /mobile_element_type="retrotransposon: copia-like FT retrotransposon AtRE1" FT repeat_region 868..872 FT /note="target site duplication" FT repeat_region 873..1039 FT /rpt_type=LONG_TERMINAL_REPEAT FT primer_bind 1040..1053 FT CDS 1171..5514 FT /codon_start=1 FT /transl_table=1 FT /gene="AtRE1" FT /product="polyprotein" FT /db_xref="GOA:Q9SXQ3" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR013103" FT /db_xref="InterPro:IPR036397" FT /db_xref="InterPro:IPR039537" FT /db_xref="UniProtKB/TrEMBL:Q9SXQ3" FT /protein_id="BAA78425.1" FT /translation="MSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGT FT DAAPRVNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYG FT HVTQFRTQLKQWTKGTKTIDDYMQGFVTHFDQLALLGKPMDHDEQVERVLENLPEEYKP FT VIDQIAAKDTPPTLTEIHERLLNQESKILAVSSATVIPITANAVSHRNTTTTTNNNNGN FT RTNRYDNRNNNNNSKPWQQSSSNFRPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLS FT SVNSQQPPSPFTLWQPRANLALGSPYSSNSWLLDSGATHHITSDFNNLSLHQPYTGGDD FT VMVVDGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFL FT ASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPS FT ILNSVISNYSLSVLNPSHKFLSCLDSLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPI FT LSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLVENRFQTRIGTFYSDNGG FT EFVALREYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAF FT AVAVYLINRLPTPLLQLESPCQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQ FT CVFLGYSLTQSAYLCLHLQTSRIYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVW FT SPHTTLPTRTPVLPAPSCSDPHHAATPPSSPSAPSRNSQVSSSNLDSSFSSSFPSSPEP FT TAPRQNGPQPTTQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTT FT SASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPINTHSMGTRAKAGIIKPNLKYSLAVS FT LAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKY FT NSDGSLNRYKARLVAKGYNQRPGLDYVETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVN FT NAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGF FT VNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHY FT FLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTE FT YRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK FT GNTLSLHAYSDADWTGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVA FT NTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQ FT VQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRVPPS" FT repeat_region 5521..5688 FT /rpt_type=LONG_TERMINAL_REPEAT FT repeat_region 5689..5693 FT /note="target site duplication" XX SQ Sequence 7405 BP; 2119 A; 1867 C; 1253 G; 2166 T; 0 other; aaaaaaaaaa atcaaattct caaattcaat aagggaaact tactgatccc aggaacagaa 60 gaactccctc cctcaatagc agtggcgccg ccgaagagaa taagacgagg accgtgagtc 120 ttagtagctg caacagccgt aagtgtatga gcgcatctag gaccaggagc atcgtcttca 180 tcatcccaaa aggtttctag ggttttatac tgaggagcta gatgtagcca aggcttcgag 240 cccattggaa accactttac gggtataaat cgatcccgca acagccaaaa tactgaacca 300 gaagcagaga aatgagaaga cgaaacctag aaagcgaatc aaagaaggaa agactacggc 360 actggacgaa agaactaggt agaaagttca gatcggagga gtaagaagaa ttcacggcgg 420 agaacggtgg cgagttacga cggacggact gtcttctcca caaagtaaaa accctttttt 480 tttttcagag actatttttt gtttttgaat taaaagagaa gaaaaaataa aataaaaatc 540 tttgcttcgc cgagttttgg aggacacagt tttcttcgga tagaaaaggc gttttcgctg 600 agatggactt ttagtcttct tctttagtca acggctttat atgtatgtga attgtctaga 660 ttaccctttg ttttctttta tttgtatatc tggtaaagtg gtagtaatat ttaactttaa 720 tttacaaaaa acaaaagatt tgaatctatc caaatttaat tactgtgtgt agacaattct 780 aagaaaaaca tttctatttc aacactttat tatcgaaact ttgaaatttg aattttcgtt 840 tagaggaaca ttctaattct atacacattt tctattaagg atatcaatca tttccttgat 900 tgattccaat catatcttcc atgtttgtaa tattgtatat actcacattg attataagtg 960 tgctcagcaa gtctctcttg tgtatatata ttgtaaatcg ttgaatggaa taaatcaatc 1020 acttctataa acctttatat ggtatcagac gcctagatcc aaaataataa taaaaaaaat 1080 cgatcttctt atttcttctt cgtctctcct tcattggctg cccacgctga agaactcgtt 1140 ctcaacaaca caaatatcct taacgttaac atgagtaacg ttaccaaact caccagcact 1200 aactacctca tgtggagccg ccaggttcat gcgctcttcg atgggtatga actcgctggt 1260 tttctcgatg gctctacaac catgccgcct gcgaccattg gcacagatgc ggctccccgt 1320 gtcaatcccg actacactcg ctggaaaaga caagacaagc tcatctacag tgccgttctt 1380 ggagccatct ccatgtcggt tcaaccggcg gtgtcaagag ccactaccgc tgctcagatc 1440 tgggagactc tccgcaagat ctacgccaac ccaagctatg gccatgtcac tcaatttcgg 1500 acgcaactaa aacaatggac gaaaggtacc aaaacaattg atgactatat gcaaggcttt 1560 gtaactcatt ttgaccagct tgcactcctc gggaaaccaa tggatcatga cgaacaagtc 1620 gagcgagtgc tggaaaactt accagaggaa tacaaacccg tcatagacca gatcgctgcc 1680 aaagatactc ctcccactct caccgagatc catgagcgcc tactgaatca agaaagcaaa 1740 atcctcgccg tcagctcagc cactgtcatt ccaatcaccg ccaacgccgt ctctcatcgc 1800 aacaccacca ccaccaccaa caacaacaat ggcaaccgca ccaaccgtta tgataaccgt 1860 aacaataaca acaactcaaa gccgtggcaa cagtcctcct cgaatttccg cccaaacaat 1920 aaccaatcca aaccatattt gggaaagtgt caaatctgtg gcgttcaagg acatagcgcc 1980 aaacgatgtt ctcaacttca acattttctg tccagtgtca attcacagca accaccatct 2040 ccgttcactc tgtggcagcc tagagcaaat ctcgcacttg gctctcctta ctcctccaac 2100 agttggcttc tcgatagtgg cgctacacat catatcacat ccgacttcaa caatttgtct 2160 cttcatcagc cctatactgg tggtgacgat gtgatggttg ttgatgggtc tactatcccc 2220 atatcacata ctggttctac ttctctatcc acaaaatctc gtcccttaaa tctacacaac 2280 attttatatg ttcctaatat acacaagaat ttaatttctg tgtatcgctt atgcaatgct 2340 aatggtgtct ctgtcgaatt ctttctggca tcctttcagg tgaaggatct caacacgggg 2400 gtcccattac tccaaggcaa aactaaggat gagttgtatg agtggcccat agcatcgtct 2460 caaccggtct ctctgtttgc gtctccaagc tcgaaagcta ctcattcatc ttggcatgct 2520 cgtttaggcc atccggctcc ttcaatttta aattctgtca tttcaaatta ttctctctct 2580 gtgttaaacc catctcacaa atttctctct tgcttagatt cccttatcaa taaaagtaat 2640 aaagtccctt tctctcaatc aaccataaat tcgaccagac cccttgaata catttattct 2700 gatgtttgga gctcacctat tctttcacat gataattatc gatactatgt catctttgtt 2760 gatcacttta cccgatatac ttggctctat cctttaaaac agaaatctca agttaaagag 2820 acgttcatta cattcaaaaa tctggtggaa aatcgttttc agacacggat tggtactttt 2880 tattcagaca atggtggtga gttcgtcgca ctacgggaat acttctcaca acatggtatc 2940 tcgcatctca cttctccgcc acatacacca gaacacaatg ggctctccga acgtaaacat 3000 cgtcacattg ttgaaaccgg tctcaccttg ctatctcacg catccattcc gaagacgtat 3060 tggccttacg catttgctgt agctgtttac ttgatcaatc gactaccaac acctctactt 3120 cagcttgagt ctccgtgtca gaaattattt ggcacatcac caaattacga taagctcaga 3180 gtttttggat gcgcctgtta tccgtggctg agaccttaca atcaacacaa actcgatgac 3240 aaatctagac agtgtgtgtt tttgggttac tcacttaccc aaagtgctta tctctgtctt 3300 catcttcaaa caagccgaat atacatctcc agacatgtcc gctttgatga aaattgcttt 3360 cccttctcca attatctcgc gactctctct ccggtacaag aacagcgtcg tgaatcatct 3420 tgtgtttggt cccctcatac aactcttcca actcgcactc cagttttgcc ggctccctcg 3480 tgttcagatc ctcaccacgc tgccacacca ccgtcatcgc cgtcagctcc atcccgcaac 3540 tctcaggtat cgtcttctaa ccttgactcg tctttctcct cttcttttcc atcttcccct 3600 gagcccactg ctccaagaca aaatgggccg caacccacga cccagccaac ccaaacacaa 3660 acccaaacac attcctctca aaacacatca caaaataacc caacaaatga aagcccatca 3720 caattagccc aatcattgtc cacaccagcc caatcttctt cctcttcgcc aagcccgaca 3780 acctcagctt cgtcatcttc aacatctccg actccaccat caatcctgat acatccacct 3840 cctccgcttg ctcaaattgt taacaacaac aaccaagctc cgatcaatac tcattccatg 3900 ggcaccaggg ccaaagctgg catcattaaa ccaaatctca agtattctct agcagtttct 3960 ttggccgctg aatcagaacc acgaacagct attcaagctc tcaaagatga acgatggaga 4020 aatgccatgg ggtccgaaat aaatgcacaa attggtaacc atacatggga tcttgttccg 4080 cctccaccaa gccatgtaac gattgttggc tgccgttgga tcttcaccaa gaaatacaat 4140 tccgatgggt ctctaaatcg atacaaggcg cgtcttgtgg ctaaaggata caatcagcga 4200 cctggacttg attatgtaga gacattcagc cctgtaatca agtcaacttc aattcgaatt 4260 gttctgggtg ttgcggttga tcgctcatgg cccatacgac agctagacgt caacaacgcc 4320 ttccttcaag ggacactcac agacgatgtc tacatgtcac agcctccagg attcattgat 4380 aaggatcgtc ctaattatgt ctgcaaatta aggaaagctc tctatggttt gaaacaggct 4440 ccacgtgcct ggtatgttga gctacggaat tatcttctca ccattggttt tgttaattcg 4500 gtttctgata cgtctctctt tgttcttcaa cggggaaaat caattgtcta catgcttgtc 4560 tatgttgatg acattctgat caccggcaat gacccgacct tacttcacaa cactcttgat 4620 aacctatctc aacgtttttc agtcaaggat catgaggaac ttcactactt tctgggaatc 4680 gaagcaaaac gggtgccaac tggtttacat ctaagtcaac gtcgctacat tcttgatctg 4740 ctggctcgta cgaatatgat cacggcaaaa ccggtgacaa ccccaatggc tccctcacca 4800 aaattgtcgc tctattcggg taccaaacta acagatccta cggagtacag aggcattgtt 4860 ggcagcctcc aatatcttgc atttacccgt cctgacatat cttatgcggt caaccgattg 4920 tcacagttta tgcatatgcc tacagaagaa catttgcaag ccttgaagcg tattcttcga 4980 tatttggctg gtactccaaa tcatggtatc tttctcaaga aaggtaatac tctatccttg 5040 cacgcatatt ctgatgctga ctggacaggg gacaaagatg attatgtttc aacaaatggc 5100 tacattgttt atcttggtca ccatccaatc tcttggtcat ctaaaaagca aaaaggggtt 5160 gtacgctcat caaccgaagc tgagtacagg tcggtagcta atacttcttc agaaatgcaa 5220 tggatatgtt ccttactcac agagcttggt attcgactca cacgtccacc agttatctac 5280 tgcgataatg ttggcgccac gtatctctgt gcaaatccgg tgttccactc tagaatgaag 5340 cacatcgcga tagattacca cttcatcaga aatcaggtac aatccggagc tcttcgtgtg 5400 gttcatgtct ctacacacga ccaattagcg gacactctaa cgaagccgtt gtcaagaaca 5460 gcttttcaaa atttcgcatc caagattgga gttacaagag tccctccatc ttgagggggc 5520 gtattaagga tatcaatcat ctccttgatt gattccaatc atatcttcca tgtttgtaat 5580 attgtatata ctcacattga ttataagtgt gctcagcaag tctctcttgt gtatatatat 5640 tgtaaatcgt tgaatggaat aaatcaatca cttctataaa cctttatatt ttcaataagc 5700 tggagcctta ttggtaattt atctgaatat tcaaaatata atcattagct actttatgga 5760 attgatttct tcttaaattt actataatta atctccttaa atcacgaaaa aaataaaatt 5820 tgtttcttta aatagctgta aagtcaacta actgagattt ataaagtcaa actattcctt 5880 ctgttattac cttcctctca aagtctcaac ctttgcctgt aaataaccag agagagacaa 5940 agctcacaaa acagaggaga atctctaaac agttaaaaat aaacaaaagt caaaaaccta 6000 ctggtcaaat tcaatgcaac tgagtctaat actgaagctt attcacatcc caagccactc 6060 tcataactcc aaaccttgaa ttcgcctctg tgaaagtcct cccaacatca tctgatccat 6120 aagggatcat ctttttgttc ccatcatatg actcactaag ctccattaca tcaactacac 6180 atatctgtct tgtctccagg cttaaaccgt accattcacc gtctgttctc aacaccattc 6240 ctttcccgat ctcgtctcct ctctcgtcca taagcctcac ttgttgccct tgttttatcc 6300 cttcttctga tgatgacgat gatctcatca gactctctcc tgttttcggg gtttctgttg 6360 cagtttgatc tttaattggt gttgatggtt tctgctgcca agtgttttca tctccaggac 6420 tctccggtag atcccctgag ctgttattat catgagctgg ccctgtttgc ttgtttgctc 6480 gagctagttt cgcttttcgg ttattcagcc tgataataaa ctttcaatgt cagataatga 6540 atagtgatta cgagattctc tttgcagctg acgaagagga acaaataaaa gcaagtacca 6600 gtttttcagc tgcgaagatg taataacctc cgaaccctgc aaaatcatgt aatcaacgag 6660 ggcatcgttc gtaatacgtg gttggaaatt aaaaagagta gaattcttga actcaccttt 6720 tgacttattt tatcagccca taactgtctc gaagctgaat tccgctgcaa atcaggttct 6780 tcagcaagcg ccttctcaat catccccatt tgatcagcat tcataatact acgcttccgt 6840 ttcttcttct gcttctcaaa gacaaggaag gtttcagatt tctcatcctc cttcacctct 6900 cctgatgcac tgcctttaaa tcgcttgctc atattctgaa ccaactctcc ctcttcaacc 6960 agacccttcc ctctgttaga gcttgtatct gaaccactgg tttcaagatt gctagcatct 7020 gcatcgctct ctttcaaccg ttcaactgtg tctatctcct cgttcacgcc ttgctttgtc 7080 atcacacctt caactcggac atcacaatcc tctgaagctt cctcattgtt aaggttcaga 7140 agctctttta gcttaccaga taaattcccg cccctacctt caatatccta gtacaacata 7200 acatttgaag cttagcaaaa gatctgtctt ttgtagaaaa tcaacatacg atggacatga 7260 gtaaaacctt gttacaccta cttgtatcag tgtaactaaa cagataagcc agagaattgt 7320 aaaaccaatg tataagagag caaaaagctt tttcaccttc atctgtactt gactttcctc 7380 aaactcggaa tggattaacg gctgt 7405 //