Dbfetch
ID X76776; SV 1; linear; genomic DNA; STD; HUM; 6933 BP. XX AC X76776; XX DT 30-MAY-1994 (Rel. 39, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 6) XX DE H.sapiens HLA-DMB gene XX KW HLA-DMB gene. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RX PUBMED; 8034636. RA Radley E., Alderton R.P., Kelly A., Trowsdale J., Beck S.; RT "Genomic organization of HLA-DMA and HLA-DMB. Comparison of the gene RT organization of all six class II families in the human major RT histocompatibility complex"; RL J Biol Chem 269(29):18834-18838(1994). XX RN [2] RP 1-6933 RA Beck S.; RT ; RL Submitted (16-DEC-1993) to the INSDC. RL S. Beck, Imperial Cancer Research Fund, 44 Lincoln's Inn Fields, London RL WC2A 3PX, UK XX DR MD5; ed1ff6f81ed01ba4a0f9a24ebf57db5e. DR Ensembl-Gn; ENSG00000226264; homo_sapiens. DR Ensembl-Gn; ENSG00000234154; homo_sapiens. DR Ensembl-Gn; ENSG00000239329; homo_sapiens. DR Ensembl-Gn; ENSG00000241296; homo_sapiens. DR Ensembl-Gn; ENSG00000241674; homo_sapiens. DR Ensembl-Gn; ENSG00000242092; homo_sapiens. DR Ensembl-Gn; ENSG00000242386; homo_sapiens. DR Ensembl-Gn; ENSG00000242574; homo_sapiens. DR Ensembl-Tr; ENST00000383231; homo_sapiens. DR Ensembl-Tr; ENST00000395312; homo_sapiens. DR Ensembl-Tr; ENST00000412948; homo_sapiens. DR Ensembl-Tr; ENST00000418107; homo_sapiens. DR Ensembl-Tr; ENST00000424822; homo_sapiens. DR Ensembl-Tr; ENST00000428420; homo_sapiens. DR Ensembl-Tr; ENST00000440078; homo_sapiens. DR Ensembl-Tr; ENST00000450897; homo_sapiens. DR IMGT/LIGM; X76776. XX FH Key Location/Qualifiers FH FT source 1..6933 FT /organism="Homo sapiens" FT /chromosome="6" FT /map="p21.3" FT /mol_type="genomic DNA" FT /clone="cosmid HA14" FT /db_xref="taxon:9606" FT regulatory 19..28 FT /note="NFkB" FT /regulatory_class="promoter" FT regulatory 73..82 FT /note="J-box" FT /regulatory_class="promoter" FT regulatory 119..128 FT /note="J-box" FT /regulatory_class="promoter" FT regulatory 134..147 FT /note="Sp1" FT /regulatory_class="promoter" FT regulatory 313..322 FT /note="J-box" FT /regulatory_class="promoter" FT regulatory 439..448 FT /note="J-box" FT /regulatory_class="promoter" FT regulatory 440..458 FT /note="X-box" FT /regulatory_class="promoter" FT regulatory 478..487 FT /note="Y-box" FT /regulatory_class="promoter" FT regulatory 513..517 FT /regulatory_class="CAAT_signal" FT regulatory 574..588 FT /note="Sp1" FT /regulatory_class="promoter" FT regulatory 582..591 FT /note="NFkB" FT /regulatory_class="promoter" FT regulatory 740..749 FT /note="J-box" FT /regulatory_class="promoter" FT CDS join(756..810,2598..2879,4107..4391,5911..6027,6186..6221, FT 6576..6592) FT /gene="HLA-DMB" FT /db_xref="GOA:P28068" FT /db_xref="HGNC:HGNC:4935" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="PDB:1HDM" FT /db_xref="PDB:2BC4" FT /db_xref="PDB:4FQX" FT /db_xref="PDB:4GBX" FT /db_xref="PDB:4I0P" FT /db_xref="UniProtKB/Swiss-Prot:P28068" FT /protein_id="CAA54171.1" FT /translation="MITFLPLLLGLSLGCTGAGGFVAHVESTCLLDDAGTPKDFTYCIS FT FNKDLLTCWDPEENKMAPCEFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPF FT WGSLTNRTRPPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAH FT KTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVSVS FT AVTLGLGLIIFSLGVISWRRAGHSSYTPLPGSNYSEGWHIS" FT exon 756..810 FT /number=1 FT /experiment="experimental evidence, no additional details FT recorded" FT intron 811..2597 FT /number=1 FT regulatory 829..838 FT /note="NFkB" FT /regulatory_class="promoter" FT repeat_region 1564..1814 FT /rpt_family="MER21" FT repeat_region complement(1899..2025) FT /rpt_family="MER21" FT exon 2598..2879 FT /number=2 FT /experiment="experimental evidence, no additional details FT recorded" FT intron 2880..4106 FT /number=2 FT exon 4107..4391 FT /number=3 FT /experiment="experimental evidence, no additional details FT recorded" FT intron 4392..5910 FT /number=3 FT exon 5911..6027 FT /number=4 FT /experiment="experimental evidence, no additional details FT recorded" FT intron 6028..6185 FT /number=4 FT exon 6186..6221 FT /number=5 FT /experiment="experimental evidence, no additional details FT recorded" FT intron 6222..6575 FT /number=5 FT exon 6576..6915 FT /number=6 FT /experiment="experimental evidence, no additional details FT recorded" FT regulatory 6910..6915 FT /regulatory_class="polyA_signal_sequence" XX SQ Sequence 6933 BP; 1858 A; 1423 C; 1717 G; 1935 T; 0 other; acaatggagg cccatggagg gattttccag gcccctattc ctgatctcca tggtggcgct 60 gcttccctta ttctgcagtc ttgctttgag accagacaat tctgtactct gtctgtgcct 120 tcttccttct cagcagccct gcctctgcca cctgccccag aagggctctg ggtcctctca 180 tctcaggaca gacaagggtt tttgtaatta tcttcttggg taacctccct gtaaggaata 240 ggagaggtta tctggtcctg gtcttttggg agagcattga gaagaaaaag ttaaaccagt 300 gggcagccca ggctgcatac atcctgggaa tattgcgatt attctctcca gtaatctacg 360 gaaatctact ggttgttctg cagaaaaaga attaagagag acaaggagac ctgttgtcta 420 agactaaggc aggatgacgt ttacctagta actgatgatg ctaggctgag gcactcagtg 480 atttgtctct acatttgtcc ctgcctacct agccaatctg tccctgtttg ggacactgga 540 ctcccgtgag ctggaaggaa cagatttaat atctaggggc tgggtatccc cacatcactc 600 atttgggggg tcaagggacc cgggcaatat agtattctgc tcagtgtctg gagatcatct 660 acccaggctg gggcttctgg gacaggcgag gacccacgga ccctggaaga gctggtccag 720 gggactgaac tcccggcatc tttacagagc agagcatgat cacattcctg ccgctgctgc 780 tggggctcag cctgggctgc acaggagcag gtaaggacac ttcttctggg gactctccct 840 tcccctgctc ctgtttcagg gtaagggtgt tccgttttgt aattgcattt gacaccccag 900 atagtttgtc tccctggtat acattcctat agcactttgt actttgtagc aattttaatg 960 taattaatct gtataattat ctgtgcagtg tatattccct gctggaatat aggcaaggac 1020 aatgttcatc ttatttattg ctgcctcctc agctcctagc acagtgcctt gcatgcagca 1080 agtgcttcat aaatatgtgc gaagtgaata tttaatattt ccagcacaat acaaggctga 1140 ctctttctct tgaccctttt tctctctcaa taatttgcct tactgaaggt ctgtgttctg 1200 ggcaaattgt catgtttaaa catgcaaata atctcggggg gctactccta tccctgtgct 1260 tagtcttgca taaagaggag actggatcta aaaacttatc tactacttct actgactccc 1320 tcaaatcaga ctttcagaaa cttcagtgta tgagcttggt cagtagatgt tccctgagca 1380 ggaaatctgt gccagactag ctggatgtca ccaaggctta ggttctgagc tgaatatagg 1440 aaaaatcaac tttttttctt ctatatgctc acactcaaca cttctttgac caactgtgtg 1500 aggttttttt ttttttttta ctcataccaa ccaattctcc tatattagct ggatatccta 1560 taattcaatt ccattgtgac attaactaga gttaacatag acaccaaagg ttaaagactc 1620 agtcccataa gactgcctcc atttcagaca ccaatcacaa gtagtaggtt cccaaattac 1680 ccacatcttc tgtccaactt gcctacaaat cagaggttcc catgaccccc tccttggggt 1740 tggtaatttg ctaaagtggc ttatggaact caggaaaagt ttacttatta ttgtagattt 1800 tttacaaagg atattttaat tgataataat aattataaat attcatgggg tggataatga 1860 tgttttagta catgtaatgt acagtgatca gatcagatca tcatctcatt tatcatttct 1920 ttgtgttgga aacattccat atccttcttc tagcgatttg aaatgatata aagtattatt 1980 gttaatgaca gtcatcccac agtggtatag aacactagat cataattttg catcctttaa 2040 caaaggatat tttaaagcat acaaaggaac atccagatga agagatacca gatctggaag 2100 ggtcccaatc acaggagctc tgtccccaca gaattggggt acttcacctc ctggcatgtg 2160 gatgtgttta ccaactgaga agttctctga actccatagt tccgggattt ttatggaggc 2220 ttcatcatgt aggcatgact gattattaac tcaatctcca gccccttccc cttcagggag 2280 tatgggggat gggactaaaa gttccagact tctaatcatg acttggtctt tctggtgacc 2340 agcccctcct gcaggagccc accaagagta cctcattaga acaaaagaca ctcctgttat 2400 ctaggaaatt ctaagcgatt aggcactcta tgtcaggaac cagggtcaaa gacaaagctc 2460 tgtgcagagc tcctaaatat acgtctgtat gttttatata tttattattt gtgtatattt 2520 attatttata tatttattta tttattgcca ggccagtaga agacattgac ctgttctccc 2580 ttccctggct cctctaggtg gcttcgtggc ccatgtggaa agcacctgtc tgttggatga 2640 tgctgggact ccaaaggatt tcacatactg catctccttc aacaaggatc tgctgacctg 2700 ctgggatcca gaggagaata agatggcccc ttgcgaattt ggggtgctga atagcttggc 2760 gaatgtcctc tcacagcacc tcaaccaaaa agacaccctg atgcagcgct tgcgcaatgg 2820 gcttcagaat tgtgccacac acacccagcc cttctgggga tcactgacca acaggacacg 2880 tgaggagaga ggggtgcaga ggggctacca ggaagtgcag ttaggagggc aggccaggga 2940 ggatcccaca gtggcccagg ggtttgagat ttgagcagca aataagagaa aatgtgtgga 3000 tctgaaatgt agaaagacgg aggattgaac ctcaagggga acaaggtggc tgacgtgagt 3060 ggaacaggag taaagaaggg gaggtgaggc ttgaaccgcg aggtgccatg tggggagctt 3120 atgcagaggc tggggcatct caggatgcat acccaagatg ttcttgcctt gttatcccag 3180 attttgatgt tccagatctg atgtgggccc aggcatggga atatttggaa tcccagggga 3240 ttctgacaca tgctttttct cacccttaaa ctcttgcatt gacaatggct tgaagtttgt 3300 gaaagtaaac ttgaagatct ccacagtaca gaacagtgtg tctcaagggt ggtttctgaa 3360 ccacctttct cagaattgcc tggaggaggt gcttgttaaa gatgcaagcc ccttagtacc 3420 actccagatc tgttgaaaga aagtatctgg ggatacagcc taggaaatct gcattttaac 3480 ataattcctt ggatttttat ttaagattgt gtttgaaaaa tgtcaagata gaggcaagca 3540 agaggatcac ctaggagagt aaattagtaa aagatggcag tattagcaat ctctttagtt 3600 tgactacatt cattccaaat ttaagagtga gtcctaagtt aggcttgttt ccttgaacta 3660 tgtgaggaga aaaagcttta actagcaaaa gaacgtatta aacaagattt ggagaaaaat 3720 tccttttcca ccttaaaaaa acccaatgta caactctgga ttactcttag cttccttatt 3780 tcaaatactt tccagtttat gtacttgaaa taaatacaac aacttctaga acagcttgca 3840 gttcagatct ggcttttact aattgtaatc aaacataatt ctggaggagg aaagaaagaa 3900 aggggcaatg aaggaatggg agagaagaaa gagtaatgca ggaatacatt ctaacggttc 3960 cccttcaagg ggcagcatgg cagagggggc tggggtggaa agtgggttgc aaaatctacg 4020 aagagttgcg atagggaaga aaccaggttg aggaagcagc cagaatgtca ccctccttcc 4080 taaacatgtt tttttctcct atgcagggcc accatctgtg caagtagcca aaaccactcc 4140 ttttaacacg agggagcctg tgatgctggc ctgctatgtg tggggcttct atccagcaga 4200 agtgactatc acgtggagga agaacgggaa gcttgtcatg cctcacagca gtgcgcacaa 4260 gactgcccag cccaatggag actggacata ccagaccctc tcccatttag ccttaacccc 4320 ctcttacggg gacacttaca cctgtgtggt agagcacatt ggggctcctg agcccatcct 4380 tcgggactgg agtaagtgta tggcagatgg atggaattag ggtcaaagca gagaaaatga 4440 gatgtggatc gatacatggt acatggtaga cagcgaagtg ctgaaaatgg ggactgagtc 4500 tggaggaact tacggggggc ttaggaccag aatggggaaa tgggataaag aaatggaaat 4560 atttaggttg gtgcaaaagt aattgcagtt tttgccatta ctttcagtgg caaaaaccgc 4620 aattactttt gcaccagttt aatatttagt ctgtgctatt gctgctctgg tggtgtggtt 4680 gatgttgctg cgtctatgtt tgagggtgag aggggagcgt gcttgctttg aaatgaggat 4740 gtaaatttgg caatcatatt ttcagaaccc caaattgtaa tacactattc tagcctcctt 4800 agatttcaac tattctggtg ccagaagcag atgggagctg aaggaatgat gaaggttgaa 4860 gaaggggggc ttttcttggt gtggggcagt actgcatttg gcctgctcta ccaagcatac 4920 gggagtagta aagccacggc tggcagacca tttggcatgc atgctcaggg gccagtggat 4980 aaagaattac ttacagttca aacactgttt gaactcagtg tcgggagtag ttaaaggtat 5040 cgtgagaagt tgcacacagc tttggggact cttggaaaag aaagaggaag aaatgaggaa 5100 gaggaagggt gtctacaaag ggccagagaa caggatctca gatcagctgc tgtaaccagg 5160 tttccccttg tgggaagtgt tgtttcttgc tgggcagttg ggaagggaat ggagaacaga 5220 gaagagagtg gaaatcacat gctcacttga actttcctgg ggaacgtctc ctcacagcgt 5280 gcacaagagc ctccctttag aaatggagtg ttcattttat catgggaaaa gaatctgagt 5340 gggacatgat tcagaacagg accggcccaa ggaagtgcag gggctgtgga gtgggatgga 5400 gacaagctct gaaaggacac atgggagatc tagatgtaga aggtacacaa gtagtaggat 5460 aactcacagg atggatccac tggaggttaa gacatgtggt aagacagtgt aataggaagc 5520 tgctcagttg gagaaagtaa ggaagcaaac attgttaccg tgggggcaat ggagaggaca 5580 gtgaggagcc ctttatcctg ataagggtgg ctttgaggta aaggaaggaa agaggatgcc 5640 ttgagaggcc ccactgtatt agagaggacc tggaagccag gatgctaatt ctggggagat 5700 ggattcccca ggcttactct aggagtagag gtccatggga cgagggtttg atttgagaaa 5760 gatcattttc ttgggagtgg gtggtgtgag ctagaccctt ggagctggga taaaggacct 5820 tttaacccac tgagaggtgg ctgcaataaa tggaattgcc ctgggggtga gcaacagaaa 5880 ctgggtcaag taagtttcta ttttttgcag cacctgggct gtcccccatg cagaccctga 5940 aggtttctgt gtctgcagtg actctgggcc tgggcctcat catcttctct cttggtgtga 6000 tcagctggcg gagagctggc cactctagtg agtgactcgc tgaactccca tccccactct 6060 tggtcccact ctctgcttac tttctgtttg tgattaactc tctccttcct actgcatttg 6120 ctatgaatac tgctagatat tttcatccac aaagactggt ataatcaagt atcttcctct 6180 cttaggttac actcctcttc ctgggtccaa ttattcagaa ggtaacatct ctgttggtct 6240 gtttccctac ttgccctttg gtaggggtgc gggttagagg ggtcagtgtt gggttcaact 6300 aatcttgatt attatatggg tgagcttcca tgaggatcta ggcaagggca tgatttaagc 6360 tgccattgct aggattaaga gcaggaagga gcatcctcct cttctaccaa gtgggatgtc 6420 tgtggagagg aggctgaagg tgcttccttt gtattagttg ttggtgccct ggagttttca 6480 gtatcactgt attaaggcat gggatggtta cagtgacaaa cgatgggggc aagttgggtt 6540 gaagcctcat tatctccctt ttatttattc tgtaggatgg cacatttcct agaggcagaa 6600 tcctacaact tccactccaa gtgagaagga gattcaaact caatgatgct accatgcctc 6660 tccaacatct tcaaccccct gacattatct tggatcctat ggtttctcca tccaattctt 6720 tgaatttccc agtctcccct atgtaaaact tagcaacttg ggggacctca ttcctgggac 6780 tatgctgtaa ccaaattatt gtccaaggct atatttctgg gatgaatata atctgaggaa 6840 gggagttaaa gaccctcctg gggctctcag tgtgccatag aggacagcaa ctggtgattg 6900 tttcagagaa ataaactttg gtggaaatat tgt 6933 //