Dbfetch

ID   OX333454; SV 1; linear; genomic DNA; STD; HUM; 6696 BP.
XX
AC   OX333454;
XX
PR   Project:PRJEB55785;
XX
DT   10-SEP-2022 (Rel. 144, Created)
DT   14-APR-2023 (Rel. 144, Last updated, Version 2)
XX
DE   Homo sapiens, HLA-DQB1 gene for MHC class II antigen, cell line
DE   DKMS-LSL_ID20749249_DQB1_1, allele HLA-DQB1*04:new
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RA   Albrecht V., Schmidt H. A., Klussmeier A., Lange V., Putke K.;
RT   ;
RL   Submitted (06-SEP-2022) to the INSDC.
RL   DKMS LIFE SCIENCE LAB, Research & Development, St. Petersburger Str. 2,
RL   Saxony, 01069 Dresden, Germany
XX
DR   MD5; ea585eb256f0ee433901e6ac851994cf.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..6696
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /cell_line="DKMS-LSL_ID20749249_DQB1_1"
FT                   /db_xref="taxon:9606"
FT   exon            1..261
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*04:new"
FT                   /number=1
FT   CDS             join(153..261,1716..1985,4516..4797,5313..5423,6527..6540)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*04:new"
FT                   /product="MHC class II antigen"
FT                   /function="antigen presenting molecule"
FT                   /protein_id="CAI2365897.1"
FT                   /translation="MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQFKG
FT                   MCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGRLDAEYWNSQKDILEEDR
FT                   ASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW
FT                   FRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRA
FT                   QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGLLH"
FT   intron          262..1715
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*04:new"
FT                   /number=1
FT   exon            1716..1985
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*04:new"
FT                   /number=2
FT   intron          1986..4515
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*04:new"
FT                   /number=2
FT   exon            4516..4797
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*04:new"
FT                   /number=3
FT   intron          4798..5312
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*04:new"
FT                   /number=3
FT   exon            5313..5423
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*04:new"
FT                   /number=4
FT   intron          5424..5892
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*04:new"
FT                   /number=4
FT   exon            5893..5916
FT                   /pseudo
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*04:new"
FT                   /number=5
FT   intron          5917..6526
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*04:new"
FT                   /number=5
FT   exon            6527..6696
FT                   /gene="HLA-DQB1"
FT                   /allele="HLA-DQB1*04:new"
FT                   /number=6
XX
SQ   Sequence 6696 BP; 1679 A; 1542 C; 1647 G; 1828 T; 0 other;
     cagctccagt gctgattggt tcctttccaa aggaccatcc aatcctgcca cgcagggaaa        60
     catccacagg tttttattct ttctgccagg tacatcagat ccatcaggtc caagctgtgt       120
     tgactaccac tacttttccc ttcgtctcaa ttatgtcttg gaagaaggct ttgcggatcc       180
     ctggaggcct tcgggtagca actgtgacct tgatgctggc gatgctgagc accccggtgg       240
     ctgagggcag agactctccc ggtaagtgca gggccactgc tctccagagc cgccactctg       300
     ggaacaggct ctccttgggc tggggtaggg ggatggtgat ctccatgatc tcggacacaa       360
     tctttcatca acatttcctc tctttgggga aagagaacga tgttgcattc ccatttatct       420
     tttagtgatg aggtgagcac agtcggatcc ccatcctaca ggcttaagcc tggaagagaa       480
     ggagagagga gaggaaagag gagacaaagt gtacatttac taccagtgac aggacaaagt       540
     gagcatgggg ttatttttga agatatgaat ttctccagag acacagcagg atttgtcatt       600
     taggcgtgcc ccaagacttt gcctggacta aatattatgg gatcctgcat tgggaaatgt       660
     aaggcagcaa tggtgtctgt agtctccgta tttgaggaaa agttgtctgt attcctgact       720
     gactggagcg tttgtggagg caaaatcttg gtactgaagg aagctgactg gatgaccaca       780
     gacagggagt cttcaggttt cactgattta tgggcaaatg gtgacttgag tgggattcag       840
     agacccgagt tggtggactg aatttagcag aaaggaggat gtaaagaagg gaaataacat       900
     atattgtgaa accactcatt tcagacacag cacaatactt tacataaatt ctctctcact       960
     ccttctaaca tcctgtgtgt agatatcatg attttctttt acacaattat acttgtgata      1020
     tggatattct gttacatacc tgccctagct ggtgactgcc acagcttaat tggaatctag      1080
     tttatcaaat tcaaaagctt gtgctctttc catgaataaa tgtttctttc taggactcgg      1140
     aggtgtaggt cctttctaac ataaaagtga gtgaacctca catggcattc ggaagggtaa      1200
     atccaggcat gggaagggag gtattttacc gagggaccaa gagaatacgc atatcagaac      1260
     gaggacaggc ttaatttctg gacccgtctc atcattccct tgaactccca ggtttatgtg      1320
     gataatttta tctctgaggt ttccaggagc tcaatggaaa atgggatttc atgcgagagc      1380
     gccctgattc cctctaagtg cagaggtcta tgtaaaatca gcccgactgc ctcttccctc      1440
     ggttcacagg ctccggcagg gacagggctt tccgcccttt cctgcctgca ggaaggcgga      1500
     ttccggaagc ccccagagag ggcgggcagg gctgggcagg gctgggcaga gccgccgggc      1560
     ggatcacaag tctggagcgc caggcacggg cgggcgggaa ctggaggtcg cgcgggcggt      1620
     tccacagctc cgggccgggt cagggcggcg gctgcggggg cggccgggct ggggccgggc      1680
     cggggcctga ctgaccggcc ggtgattccc cgcagaggat ttcgtgttcc agtttaaggg      1740
     catgtgctac ttcaccaacg ggaccgagcg cgtgcggggt gtgaccagat acatctataa      1800
     ccgagaggag tacgcgcgct tcgacagcga cgtgggggtg tatcgggcgg tgacgccgct      1860
     ggggcggctt gacgccgagt actggaatag ccagaaggac atcctggagg aggaccgggc      1920
     gtcggtggac accgtatgca gacacaacta ccagttggag ctccgcacga ccttgcagcg      1980
     gcgaggtgag agtcgtcgcc cgtctgcgag gcccatcctt ggcaggggcc cagagtctct      2040
     gcgccaggag gggcgaaggg ggcgcggcct ctggaacctg agccttgttc gttccacccc      2100
     ggctgacagg aggcggcggt gggggtgctg ggggctggtg catcggaggg gcagggacct      2160
     agggcagagc agggggacag gcagagttgg tcaagctgcc tagtttcgcc ccatcctccc      2220
     cgtccgtcgg cctcgccctc tgctctgcac gttcttgcct cgtgccttat gcgtttgcct      2280
     cctcgtgcct tacctttact aagcagttct ctctgccccc aatttccgcc ctcttcccct      2340
     gcccgcccgc ccggctagca ctgccgcacc cggcaaggtc cacctacaca gctcatgcag      2400
     tgggaagctt cagacttggc ctgatggagt tagggctgcc ccacaactgc gcgcagggca      2460
     tccagcaatt acagttgtca aataagatat tttgattttt gacttcaaat tattattcat      2520
     cgtaattctg ttttcttaaa tggctctcat tcatggcgga gctctttgag atgagagtgt      2580
     tttaatcatt gcatgcctgg tatctgacac attgactggc atgtggtatg agctcaatga      2640
     tcttctgtta aattaatgaa taaatgtgct cagctgccaa tccacttagg ctcaagggaa      2700
     agcagaggat aaatagagcc ttaaaaatgg acttttatta attattttct gtcattttgc      2760
     ttaattcttt aaagtaaact cttattgact tgaatcttaa tagagtttgt gaatacaaag      2820
     tctgaggaaa aaagtgtttg ctaaaaataa aaacaacact tgaatgatgt ttgtaaggca      2880
     gttttaattt cttagaaaag ctgaacaaat ggcacaatgc aaagagcaga agttttggaa      2940
     taaatagatt gaagcaatta aattattgga taaaaatagt ttcaggttgc ttttggctta      3000
     ggttctcccc tccccccatc actatccact tcaggaataa acattctgaa agtcaatttt      3060
     acccatttag tgagcactta tttctagaca gttaccttat caaataccat ctatgttacg      3120
     tcatttaatc tcacagttgc ctgtgcatta gggattagca tcaccacttt atatatccta      3180
     atattagtac atgataaaca ctttaagtaa tcagcccaca agtactcacc aagaccttaa      3240
     gcctcccaaa gtacacaata ttctttatgt tcttcactac acatctatag agtcaaaggg      3300
     acacaaagcc ttgttaaagc cagttttgac tagaagcagc aatgagtctc atcctgtttg      3360
     atctccatgt taatgggaca aaatgatact ttcaaggcat tgaaaattta tgattaatca      3420
     atccctagtc tgactccagt gttacctatg cagattcaca aaacttttag tttactttac      3480
     actcccttgc cttcttttga ctcacatcgt agtgccagca agtacttaca tttttgctat      3540
     tttggttcta tttccataaa atttatttta tcatcttttc tcataaattt gtgccctcta      3600
     ttttactccc agtctgtgta agatgaacaa atcttataag gccacatagc tgactgtgat      3660
     ttcaggtgga ctccaggaag gagaaccaaa gaaaagttca agtccaagca gaaaccgtga      3720
     ttccttccgg atgatggctc aagagtgcct tttaattggg gtgcaacctg ctgacctcag      3780
     caaatctcag ctatatttat atgttcacat tacaggctca ttaacctagg ctgatctctg      3840
     caaggatctc agaatatttt ctacagataa catacatgat aatatctgat ttcaggacaa      3900
     aaaagtaatt ctcaatagca agggaatgga gtagggtaga cagctagtaa ttaaactcac      3960
     ttgtatgtta aaaataaatt aaggaaaaaa agaaaatgag agaacatatt actaaataaa      4020
     gaaagcatac attaaatatt tactatagtt tcacactaag agaataaagg aaatgcaata      4080
     aagtggcctg aaagataaag gatgagatgt gtaaagagac agggaaagat gtgtcatttt      4140
     tttactatga gcagcagtct gagaagataa aggaatcgag ttatgggcaa acatgatgtt      4200
     tgatcagtgc tatttgtttt gaaggcctgc ctacttttgt ttcaaatatt acagactttt      4260
     gaaatcacat tctttttgtt ttttgctgtc tgttactaga tcgcacattc tgtaaaggca      4320
     gggaccatgg tatgttgttt atctttggat tctcagtgat tgtcatattt atatttgttg      4380
     aatgaatctt aatccaagac ttggactcca ggtatctttc cactctggtt ccaaggaggg      4440
     accattccca atggtagacg tgctgtgtgg tctcacatct cactcctgtc ttttcctgtc      4500
     tgttactgcc ctcagtggag cccacagtga ccatctcccc atccaggaca gaggccctca      4560
     accaccacaa cctgctggtc tgctcagtga cagatttcta tccagcccag atcaaagtcc      4620
     ggtggtttcg gaatgaccag gaggagacaa ctggcgttgt gtccaccccc cttattagga      4680
     acggtgactg gaccttccag atcctggtga tgctggaaat gactccccag cgtggagacg      4740
     tctacacctg ccacgtggag caccccagcc tccagaaccc catcatcgtg gagtggcgta      4800
     aggggatatt gagtttctgt tactatgggc cccacaagac aaagggcaga gctccttctg      4860
     acccattcct tcccatctct tatccctgat gtcactactg agctggggat cacaggagac      4920
     tagagcacct cttgctccat ggcaagtgca tcagaagaat cctgatctca tcacctttcc      4980
     agatgctagg gaaattattc tatgtactgt ttctccagat cccagtcctg atagctcgga      5040
     gggactgatt attagggctg gtgactggga tcttagggtt taaggtatgg atgagttcct      5100
     gaggagtgga gatctgcttc cccgctctct cacctactca ctgtaccgaa ggacctattg      5160
     gctggctttc ccctccctta ggggtggtct gaatggagga ctaggttcct ttgacacttt      5220
     cacctcctgc atctcagact ggacttcagc tcctcagcag ggatgctatg gggtgtaggg      5280
     acaaacactg acactcaggc tctgcttctt aggggctcag tctgaatctg cccagagcaa      5340
     gatgctgagt ggcattggag gcttcgtgct ggggctgatc ttcctcgggc tgggccttat      5400
     tatccatcac aggagtcaga aaggtgagga accccaaggg aaaaggggaa gatgggctgt      5460
     gacccagacc ctctgttcag ggaggtcctg tctctagatg tggctctttc ctcctgaccc      5520
     tgagaggaag aaaactgagc tggaggtggg aggagacagg acaagattgg aggaggcatt      5580
     actagctgaa aggtagccct gtcacacagg tgactgatag agcttattcc aggatgtact      5640
     tactgttcat cgtctcattg gctcctttcc aaaagcttcc tccattaaga gggtcagagc      5700
     cttggcctcc ttgccttcta gtgacaattt cctttgtttt aggggatttt aaattagggt      5760
     acttaaggcc ttgaagaaca tgagtggtaa gagaatataa ctctaattaa gtcacatgtg      5820
     tcattttcct ttggggtgag agagtggctg tttgtgtaat gagacctttc tctgcataac      5880
     ttccttttgt aagacctcaa gggcctccac cagcaggtga tatttcagcc atgagccagt      5940
     gtgggggggc acaggtgtaa gagggaagag catgagctga atgcacctga ccacaatggt      6000
     ctctgttcat ggtatatttg ctgctatgag gatcaagact tagggtcgaa gtttgccagt      6060
     ttctaggaat ctccagaggt tgttccccag aaccaagcct taactttggt ggtatcttct      6120
     tgtgaaatgt gaagccagaa ccacagctta aatgttagac aagaggatga tgcccacttt      6180
     gtgccacatg ttggtggcta ctgcctgtag gcattttcca gtgactgaaa gaggctgcta      6240
     gtggtaggga tgaggtatca tccaattttc taaaaagatt gaacccttca tattccccag      6300
     aagagtaaca gctgttccgc cacttcccac atatctgcat caagctgaag ttctgtgtcc      6360
     tcacgagctg atttcacctt tgcacagatc ttgcgggagg tgacgataat acattctgga      6420
     cctcagcttt ctctgtctga agctgcaggg ggcccctgag gggtggggga gattgcaggc      6480
     ccaccagcgt accctgtgct gatcatccct cttctctctt cttcagggct cctgcactga      6540
     ctcctgagac tattttaact gggattggtt atcacttttc tgtaacgcct gcttgtccct      6600
     gcccagaatt cccagctgcc tgtgtcagcc tgtccccctg agatcagagt cctacagtgg      6660
     ctgtcacgca gccaccaggt catctccttt catccc                                6696
//