Dbfetch
ID OX333454; SV 1; linear; genomic DNA; STD; HUM; 6696 BP.
XX
AC OX333454;
XX
PR Project:PRJEB55785;
XX
DT 10-SEP-2022 (Rel. 144, Created)
DT 14-APR-2023 (Rel. 144, Last updated, Version 2)
XX
DE Homo sapiens, HLA-DQB1 gene for MHC class II antigen, cell line
DE DKMS-LSL_ID20749249_DQB1_1, allele HLA-DQB1*04:new
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RA Albrecht V., Schmidt H. A., Klussmeier A., Lange V., Putke K.;
RT ;
RL Submitted (06-SEP-2022) to the INSDC.
RL DKMS LIFE SCIENCE LAB, Research & Development, St. Petersburger Str. 2,
RL Saxony, 01069 Dresden, Germany
XX
DR MD5; ea585eb256f0ee433901e6ac851994cf.
XX
FH Key Location/Qualifiers
FH
FT source 1..6696
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /cell_line="DKMS-LSL_ID20749249_DQB1_1"
FT /db_xref="taxon:9606"
FT exon 1..261
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:new"
FT /number=1
FT CDS join(153..261,1716..1985,4516..4797,5313..5423,6527..6540)
FT /codon_start=1
FT /transl_table=1
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:new"
FT /product="MHC class II antigen"
FT /function="antigen presenting molecule"
FT /protein_id="CAI2365897.1"
FT /translation="MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQFKG
FT MCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGRLDAEYWNSQKDILEEDR
FT ASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW
FT FRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRA
FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGLLH"
FT intron 262..1715
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:new"
FT /number=1
FT exon 1716..1985
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:new"
FT /number=2
FT intron 1986..4515
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:new"
FT /number=2
FT exon 4516..4797
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:new"
FT /number=3
FT intron 4798..5312
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:new"
FT /number=3
FT exon 5313..5423
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:new"
FT /number=4
FT intron 5424..5892
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:new"
FT /number=4
FT exon 5893..5916
FT /pseudo
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:new"
FT /number=5
FT intron 5917..6526
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:new"
FT /number=5
FT exon 6527..6696
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:new"
FT /number=6
XX
SQ Sequence 6696 BP; 1679 A; 1542 C; 1647 G; 1828 T; 0 other;
cagctccagt gctgattggt tcctttccaa aggaccatcc aatcctgcca cgcagggaaa 60
catccacagg tttttattct ttctgccagg tacatcagat ccatcaggtc caagctgtgt 120
tgactaccac tacttttccc ttcgtctcaa ttatgtcttg gaagaaggct ttgcggatcc 180
ctggaggcct tcgggtagca actgtgacct tgatgctggc gatgctgagc accccggtgg 240
ctgagggcag agactctccc ggtaagtgca gggccactgc tctccagagc cgccactctg 300
ggaacaggct ctccttgggc tggggtaggg ggatggtgat ctccatgatc tcggacacaa 360
tctttcatca acatttcctc tctttgggga aagagaacga tgttgcattc ccatttatct 420
tttagtgatg aggtgagcac agtcggatcc ccatcctaca ggcttaagcc tggaagagaa 480
ggagagagga gaggaaagag gagacaaagt gtacatttac taccagtgac aggacaaagt 540
gagcatgggg ttatttttga agatatgaat ttctccagag acacagcagg atttgtcatt 600
taggcgtgcc ccaagacttt gcctggacta aatattatgg gatcctgcat tgggaaatgt 660
aaggcagcaa tggtgtctgt agtctccgta tttgaggaaa agttgtctgt attcctgact 720
gactggagcg tttgtggagg caaaatcttg gtactgaagg aagctgactg gatgaccaca 780
gacagggagt cttcaggttt cactgattta tgggcaaatg gtgacttgag tgggattcag 840
agacccgagt tggtggactg aatttagcag aaaggaggat gtaaagaagg gaaataacat 900
atattgtgaa accactcatt tcagacacag cacaatactt tacataaatt ctctctcact 960
ccttctaaca tcctgtgtgt agatatcatg attttctttt acacaattat acttgtgata 1020
tggatattct gttacatacc tgccctagct ggtgactgcc acagcttaat tggaatctag 1080
tttatcaaat tcaaaagctt gtgctctttc catgaataaa tgtttctttc taggactcgg 1140
aggtgtaggt cctttctaac ataaaagtga gtgaacctca catggcattc ggaagggtaa 1200
atccaggcat gggaagggag gtattttacc gagggaccaa gagaatacgc atatcagaac 1260
gaggacaggc ttaatttctg gacccgtctc atcattccct tgaactccca ggtttatgtg 1320
gataatttta tctctgaggt ttccaggagc tcaatggaaa atgggatttc atgcgagagc 1380
gccctgattc cctctaagtg cagaggtcta tgtaaaatca gcccgactgc ctcttccctc 1440
ggttcacagg ctccggcagg gacagggctt tccgcccttt cctgcctgca ggaaggcgga 1500
ttccggaagc ccccagagag ggcgggcagg gctgggcagg gctgggcaga gccgccgggc 1560
ggatcacaag tctggagcgc caggcacggg cgggcgggaa ctggaggtcg cgcgggcggt 1620
tccacagctc cgggccgggt cagggcggcg gctgcggggg cggccgggct ggggccgggc 1680
cggggcctga ctgaccggcc ggtgattccc cgcagaggat ttcgtgttcc agtttaaggg 1740
catgtgctac ttcaccaacg ggaccgagcg cgtgcggggt gtgaccagat acatctataa 1800
ccgagaggag tacgcgcgct tcgacagcga cgtgggggtg tatcgggcgg tgacgccgct 1860
ggggcggctt gacgccgagt actggaatag ccagaaggac atcctggagg aggaccgggc 1920
gtcggtggac accgtatgca gacacaacta ccagttggag ctccgcacga ccttgcagcg 1980
gcgaggtgag agtcgtcgcc cgtctgcgag gcccatcctt ggcaggggcc cagagtctct 2040
gcgccaggag gggcgaaggg ggcgcggcct ctggaacctg agccttgttc gttccacccc 2100
ggctgacagg aggcggcggt gggggtgctg ggggctggtg catcggaggg gcagggacct 2160
agggcagagc agggggacag gcagagttgg tcaagctgcc tagtttcgcc ccatcctccc 2220
cgtccgtcgg cctcgccctc tgctctgcac gttcttgcct cgtgccttat gcgtttgcct 2280
cctcgtgcct tacctttact aagcagttct ctctgccccc aatttccgcc ctcttcccct 2340
gcccgcccgc ccggctagca ctgccgcacc cggcaaggtc cacctacaca gctcatgcag 2400
tgggaagctt cagacttggc ctgatggagt tagggctgcc ccacaactgc gcgcagggca 2460
tccagcaatt acagttgtca aataagatat tttgattttt gacttcaaat tattattcat 2520
cgtaattctg ttttcttaaa tggctctcat tcatggcgga gctctttgag atgagagtgt 2580
tttaatcatt gcatgcctgg tatctgacac attgactggc atgtggtatg agctcaatga 2640
tcttctgtta aattaatgaa taaatgtgct cagctgccaa tccacttagg ctcaagggaa 2700
agcagaggat aaatagagcc ttaaaaatgg acttttatta attattttct gtcattttgc 2760
ttaattcttt aaagtaaact cttattgact tgaatcttaa tagagtttgt gaatacaaag 2820
tctgaggaaa aaagtgtttg ctaaaaataa aaacaacact tgaatgatgt ttgtaaggca 2880
gttttaattt cttagaaaag ctgaacaaat ggcacaatgc aaagagcaga agttttggaa 2940
taaatagatt gaagcaatta aattattgga taaaaatagt ttcaggttgc ttttggctta 3000
ggttctcccc tccccccatc actatccact tcaggaataa acattctgaa agtcaatttt 3060
acccatttag tgagcactta tttctagaca gttaccttat caaataccat ctatgttacg 3120
tcatttaatc tcacagttgc ctgtgcatta gggattagca tcaccacttt atatatccta 3180
atattagtac atgataaaca ctttaagtaa tcagcccaca agtactcacc aagaccttaa 3240
gcctcccaaa gtacacaata ttctttatgt tcttcactac acatctatag agtcaaaggg 3300
acacaaagcc ttgttaaagc cagttttgac tagaagcagc aatgagtctc atcctgtttg 3360
atctccatgt taatgggaca aaatgatact ttcaaggcat tgaaaattta tgattaatca 3420
atccctagtc tgactccagt gttacctatg cagattcaca aaacttttag tttactttac 3480
actcccttgc cttcttttga ctcacatcgt agtgccagca agtacttaca tttttgctat 3540
tttggttcta tttccataaa atttatttta tcatcttttc tcataaattt gtgccctcta 3600
ttttactccc agtctgtgta agatgaacaa atcttataag gccacatagc tgactgtgat 3660
ttcaggtgga ctccaggaag gagaaccaaa gaaaagttca agtccaagca gaaaccgtga 3720
ttccttccgg atgatggctc aagagtgcct tttaattggg gtgcaacctg ctgacctcag 3780
caaatctcag ctatatttat atgttcacat tacaggctca ttaacctagg ctgatctctg 3840
caaggatctc agaatatttt ctacagataa catacatgat aatatctgat ttcaggacaa 3900
aaaagtaatt ctcaatagca agggaatgga gtagggtaga cagctagtaa ttaaactcac 3960
ttgtatgtta aaaataaatt aaggaaaaaa agaaaatgag agaacatatt actaaataaa 4020
gaaagcatac attaaatatt tactatagtt tcacactaag agaataaagg aaatgcaata 4080
aagtggcctg aaagataaag gatgagatgt gtaaagagac agggaaagat gtgtcatttt 4140
tttactatga gcagcagtct gagaagataa aggaatcgag ttatgggcaa acatgatgtt 4200
tgatcagtgc tatttgtttt gaaggcctgc ctacttttgt ttcaaatatt acagactttt 4260
gaaatcacat tctttttgtt ttttgctgtc tgttactaga tcgcacattc tgtaaaggca 4320
gggaccatgg tatgttgttt atctttggat tctcagtgat tgtcatattt atatttgttg 4380
aatgaatctt aatccaagac ttggactcca ggtatctttc cactctggtt ccaaggaggg 4440
accattccca atggtagacg tgctgtgtgg tctcacatct cactcctgtc ttttcctgtc 4500
tgttactgcc ctcagtggag cccacagtga ccatctcccc atccaggaca gaggccctca 4560
accaccacaa cctgctggtc tgctcagtga cagatttcta tccagcccag atcaaagtcc 4620
ggtggtttcg gaatgaccag gaggagacaa ctggcgttgt gtccaccccc cttattagga 4680
acggtgactg gaccttccag atcctggtga tgctggaaat gactccccag cgtggagacg 4740
tctacacctg ccacgtggag caccccagcc tccagaaccc catcatcgtg gagtggcgta 4800
aggggatatt gagtttctgt tactatgggc cccacaagac aaagggcaga gctccttctg 4860
acccattcct tcccatctct tatccctgat gtcactactg agctggggat cacaggagac 4920
tagagcacct cttgctccat ggcaagtgca tcagaagaat cctgatctca tcacctttcc 4980
agatgctagg gaaattattc tatgtactgt ttctccagat cccagtcctg atagctcgga 5040
gggactgatt attagggctg gtgactggga tcttagggtt taaggtatgg atgagttcct 5100
gaggagtgga gatctgcttc cccgctctct cacctactca ctgtaccgaa ggacctattg 5160
gctggctttc ccctccctta ggggtggtct gaatggagga ctaggttcct ttgacacttt 5220
cacctcctgc atctcagact ggacttcagc tcctcagcag ggatgctatg gggtgtaggg 5280
acaaacactg acactcaggc tctgcttctt aggggctcag tctgaatctg cccagagcaa 5340
gatgctgagt ggcattggag gcttcgtgct ggggctgatc ttcctcgggc tgggccttat 5400
tatccatcac aggagtcaga aaggtgagga accccaaggg aaaaggggaa gatgggctgt 5460
gacccagacc ctctgttcag ggaggtcctg tctctagatg tggctctttc ctcctgaccc 5520
tgagaggaag aaaactgagc tggaggtggg aggagacagg acaagattgg aggaggcatt 5580
actagctgaa aggtagccct gtcacacagg tgactgatag agcttattcc aggatgtact 5640
tactgttcat cgtctcattg gctcctttcc aaaagcttcc tccattaaga gggtcagagc 5700
cttggcctcc ttgccttcta gtgacaattt cctttgtttt aggggatttt aaattagggt 5760
acttaaggcc ttgaagaaca tgagtggtaa gagaatataa ctctaattaa gtcacatgtg 5820
tcattttcct ttggggtgag agagtggctg tttgtgtaat gagacctttc tctgcataac 5880
ttccttttgt aagacctcaa gggcctccac cagcaggtga tatttcagcc atgagccagt 5940
gtgggggggc acaggtgtaa gagggaagag catgagctga atgcacctga ccacaatggt 6000
ctctgttcat ggtatatttg ctgctatgag gatcaagact tagggtcgaa gtttgccagt 6060
ttctaggaat ctccagaggt tgttccccag aaccaagcct taactttggt ggtatcttct 6120
tgtgaaatgt gaagccagaa ccacagctta aatgttagac aagaggatga tgcccacttt 6180
gtgccacatg ttggtggcta ctgcctgtag gcattttcca gtgactgaaa gaggctgcta 6240
gtggtaggga tgaggtatca tccaattttc taaaaagatt gaacccttca tattccccag 6300
aagagtaaca gctgttccgc cacttcccac atatctgcat caagctgaag ttctgtgtcc 6360
tcacgagctg atttcacctt tgcacagatc ttgcgggagg tgacgataat acattctgga 6420
cctcagcttt ctctgtctga agctgcaggg ggcccctgag gggtggggga gattgcaggc 6480
ccaccagcgt accctgtgct gatcatccct cttctctctt cttcagggct cctgcactga 6540
ctcctgagac tattttaact gggattggtt atcacttttc tgtaacgcct gcttgtccct 6600
gcccagaatt cccagctgcc tgtgtcagcc tgtccccctg agatcagagt cctacagtgg 6660
ctgtcacgca gccaccaggt catctccttt catccc 6696
//