Dbfetch
ID OX333418; SV 1; linear; genomic DNA; STD; HUM; 7054 BP. XX AC OX333418; XX PR Project:PRJEB55785; XX DT 10-SEP-2022 (Rel. 144, Created) DT 14-APR-2023 (Rel. 144, Last updated, Version 2) XX DE Homo sapiens, HLA-DQB1 gene for MHC class II antigen, cell line DE DKMS-LSL_ID20480861_DQB1_1, allele HLA-DQB1*02:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Albrecht V., Schmidt H. A., Klussmeier A., Lange V., Putke K.; RT ; RL Submitted (06-SEP-2022) to the INSDC. RL DKMS LIFE SCIENCE LAB, Research & Development, St. Petersburger Str. 2, RL Saxony, 01069 Dresden, Germany XX DR MD5; 5b06255c0266e9d8dc3008adc8c8ca2a. XX FH Key Location/Qualifiers FH FT source 1..7054 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL_ID20480861_DQB1_1" FT /db_xref="taxon:9606" FT exon 1..258 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=1 FT CDS join(150..258,1697..1966,4856..5137,5654..5764,6885..6898) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="CAI2365653.1" FT /translation="MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKG FT MCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKR FT AAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW FT FRNEQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGLLH" FT intron 259..1696 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=1 FT exon 1697..1966 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=2 FT intron 1967..4855 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=2 FT exon 4856..5137 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=3 FT intron 5138..5653 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=3 FT exon 5654..5764 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=4 FT intron 5765..6249 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=4 FT exon 6250..6273 FT /pseudo FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=5 FT intron 6274..6884 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=5 FT exon 6885..7054 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02:new" FT /number=6 XX SQ Sequence 7054 BP; 1768 A; 1637 C; 1709 G; 1940 T; 0 other; cagctccagt gctgattggt tcctttccaa gggaccatcc aatcctacca cgcatggaaa 60 catccacaga tttttattct ttctgccagg tacatcagat ccatcaggtc cgagctgtgt 120 tgactaccac ttttcccttc gtctcaatta tgtcttggaa aaaggctttg cggatccccg 180 gaggccttcg ggcagcaact gtgaccttga tgctgtcgat gctgagcacc ccagtggctg 240 agggcagaga ctctcccggt aagtgcaggg cagctgctct ccagagccgc tactctggga 300 acaggctctc cttgggctgg ggtacgggga tggtgatctc cataatctcg gacacaatct 360 tttatcaaca tttcctctgt tttgggaaag agagctatgt tgcatttcca tttatctttt 420 aatgatgaag tgaggacaat ccaatcccat cctacaggct taagcctgga agaggaggag 480 agaggagaga aaagaggaga caaagtgttc atttactacc agtgatagga caaagtgagc 540 atggggttat ttttgaagat atgaatttct ccaaagacac agcaggattt gccatttagg 600 cgtgtcccaa gacttgcctg gactaaatat tatgatttcc tgcattggga aatgcaaggc 660 agcaatggtg tctgtagtct ccgtatttgg ggaaaagttg tctgtattcc tgacccagtg 720 gagcgtttgt ggaggcaaaa tcttggtact gagggaagct gactggctga ccacagaaag 780 agagccttca ggtttcactg atttatgggc aaatggtgac ctgagtggga ttcagatacc 840 cgagttgatg atggactaaa tttagtagaa aggaggatgt aaagaaggga aataacacat 900 actgtgaaac cactcatttc agacacagaa caatacttta cataaattct ctctcactcc 960 ttctaacatc ctgtgtgtag atatcatgat tttcttttac acaattatac ttgtgatatg 1020 gatattctgt tacataaact gcccgggctg gtgactgcca cagtttaatg ggaatctagt 1080 ttatcaaatt caaaagcttg tgctctttcg gtgaataaat gtttctttct aggactcaga 1140 gatctaggac tcccttcttt ctaacacaga cgtgagtgaa cctcacaggg cacttgggag 1200 ggtaaatcca ggcatgggaa ggaaggtatt ttacccaggg accaagagaa taggcgtatc 1260 ggaagaggac aggtttaatt cctggacctg tctcgtcatt cccttgaact gtcaggttta 1320 tgtggataac tttatctctg aggtacccag gagctccatg gaaaatgaga tttcatgcga 1380 gaacgccctg atccctctaa gtgcagaggt ccatgtaaaa tcagcccgac tgcctcttca 1440 cttggttcac aggccgagac agggacaggg ctttcctccc tttcctgcct gtaggaaggc 1500 ggattcccga agacccccga gagggcgggc agggctgggc agagccgccg ggaggatccc 1560 aggtctgcag cgcgaggcac gggccggcgg gaacttgtgg tcgcgcgggc tgttccacag 1620 ctccgggccg ggtcagggtg gcggctgcgg gggcggacgg gctgggccgc actgactggc 1680 cggtgattcc tcgcagagga tttcgtgtac cagtttaagg gcatgtgcta cttcaccaac 1740 gggacagagc gcgtgcgtct tgtgagcaga agcatctata accgagaaga gatcgtgcgc 1800 ttcgacagcg acgtggggga gttccgggcg gtgacgctgc tggggctgcc tgccgccgag 1860 tactggaaca gccagaagga catcctggag aggaaacggg cggcggtgga cagggtgtgc 1920 agacacaact accagttgga gctccgcacg accttgcagc ggcgaggtga gcggcgtcgc 1980 ccctctgcga ggcccaccct tggccccaag tctctgcgcc aggaggggcg aagggtcgtg 2040 gcctctggaa cctgagcccc gtttgttcca ccccagagga caggaggcag cggcgagagt 2100 ggtgggggca ggtgcatcgg aggtgcgggg acctagggca gagcaggggg acaggcagag 2160 ttggccaggc tgcctagtgt cgccccagcc tacccgttcg tcggccttgt cctctgctct 2220 gcatgttctt gcctcgtgcc ttatgcattt gcctcctttt gccttacctt tgctaagcag 2280 ctctctctgc tcagaatgcc cgccctcttc ccctgcccgc ccgcccgccc cactagcact 2340 gccccaccca gcaaggccca cgtgcacagc tcttgcagca ggaagcttca ggcttagcct 2400 ggtggagtta gggctgttcc acaactgcgc gcaggacatt cagcaattac agttgtgaaa 2460 taagatattt taacttttgg cttcaaatca ttattcatcg taattctgtt ttcttaaatg 2520 gctctcattc atggcagaga tctttgaggt gagggtgttt taatcattgc atgcctagta 2580 cctgacacat tgactggtat gtggtgtgag ctcaatgatc ttctgttaaa ttaatgaata 2640 aatgtactca gctgcccatc cacttaggct caagaaaaaa aaagaggtaa acagagcctt 2700 aaaaatggac tttattaatt attttctata attttgctta atgctttaaa gtaaactctt 2760 attgacttgg atcttaatag agtttgtgaa tacaaaatct gaggaaaaaa gtttttgcta 2820 aaaataaaaa caacgcttga aagatattgt aaggcagttt aaatttcttt tcttttcttt 2880 tttttttttt tttgagacgg attctcactc tgtcgcccag gccggagtgc agtggcgcga 2940 tctcggctca ctgcaagctc cgcctcccgg gttcacgcca ttctcctgcc tcagcctcct 3000 gagtaggtgg gattacaggc gcgtgccacc acgcccggct aatttttttg tatttttagt 3060 agaggcgggg tttcaccgtg ttagccagga tggtctggat ctcctgacct catgatccgc 3120 ccgcctcggc ctcccaaagt gctgggatta caggtgtgag ccacagtgcc cggccggcac 3180 ttttaatttc ttagaaaagc tgaacaaatg gcacaatgca aagagcaaaa gttttggaat 3240 aaatagattg aagccattaa attattggat aaaaatagtt tcgggttgct tttggcctag 3300 gttctcccct ccccccatga ctatccactt caggaataaa cattctgaaa gtcaatttta 3360 cccatttagt gagcatttat ttctagacag ttgccttatc aaataccatc tatgttacgt 3420 catttaatct cacagttact tgtgcatcag agattagcat caccacttta tatattggta 3480 catgataaac actttattgg tcatggatgg ggagatggtc actgtaggct aatattggta 3540 catgataaac actttaagta atcagcccat aattgctcac caagacctta agcctcccaa 3600 agtacacaac attctttgtg ttcttcacta cacatccata gagtctaagg gacgtaaagc 3660 ctcgttaaag ccagttttga ccagaagcag caatgagtct attcctgtgt gttttccatg 3720 ttaatgggac aaaatgatac tttcaaggca ttgaaaattc atgattaatc aatccctagt 3780 ctgaccccag tgttatctat gcaggtttgc aaaaccttta gtttacttaa tactcccttg 3840 ccttcttttg attcacatcc taatgccagc aaatacttat gtttttgcta tttcagttcc 3900 atttccataa aatttatttt atcatctttt ctcataaatt tatgccctct atttttactc 3960 ccaatctgtt taagatgaac aaatcttata aggccacata gctgactgtt atttctgttg 4020 gactccagga aggagaacct aaagaaaagt tcaagtccaa gcagaaaccg tgatttcttc 4080 cagatgatgg ctcatgagtg ccatttaatt ggggtgccac ctggtgacct cagcaaatcc 4140 cagctatatt tatgtgttca cattacagga tcattaaccc agaccgacca ctgcacagat 4200 ctcagaatat tttctatgga gaacatacat aataatgcct gatttcagaa gaagaaagta 4260 attctcaata gcaaggggat ggagtagggt agacagctgt aattaaactc acttgtgtga 4320 taaaaagaaa ttaaggaaaa aagaaaatga gagaacatat tactaaataa agaaagcata 4380 cattaaatat ttactatagt ttcacactaa gagaataaag gaaatgcaat aaagtggcct 4440 gaaaggtaaa ggatgagatg tgtaaagggg tgtagtattt ttactatgag cagcaatctg 4500 agaagataaa ggaatcgagt tacgggcaaa catgatgttt gatcagtgtt atttgttttc 4560 aaggcctgcc taaatttttt tcaaatatta caaacttttg aaataacatt ctttttgttt 4620 tttgctgtct gttactaggt tgcacatttt ataaaggcag ggaccatggt atgttgtttg 4680 tctttggatt ctcagtgatt gttatattta tatttgttga aggaacctta atccaagact 4740 tggactccaa gtatctttcc actctggttc caaggaggga ccttcctcac agcaggcatg 4800 ctgtgtggtc tcacatctca ctcctatatc tttccctgtc tgttactgcc ctcagtggag 4860 cccacagtga ccatctcccc atccaggaca gaggccctca accaccacaa cctgctggtc 4920 tgctcggtga cagatttcta tccagcccag atcaaagtcc ggtggtttcg gaatgaacag 4980 gaggagacag ctggcgttgt gtccaccccc cttattagga atggtgactg gaccttccag 5040 atcctggtga tgctggaaat gactccccag cgtggagacg tctacacctg ccacgtggag 5100 caccccagcc tccagagccc catcaccgtg gagtggcgta aggggatatt gagtttctgt 5160 tactgtgggc cccacaagac aaaggacaga gctccttctg acccatccct tcccatctct 5220 tatccctgat gtcactgctg agctgggaat cacaggagac tagagcacct ctagttccat 5280 ggcgagtgca tcagaagaat cctgatctca tcacctttcc agatgctagg gaaattactc 5340 tacatactgt tgctctggat cccagtcctg attgctctga ggaactgatt attagggctg 5400 gtgactggga tcttagggtc taagtttatg gatgagttcc tgaggagtgg agatctgctt 5460 ccccactctg tcacctactc actgtatcca aggacctatt ggctggcctt tccctccctt 5520 aggggtggtc tgaatggaga actaggttcc tttgatgcct tcacctcctg catctcagac 5580 tggacttcag ctcctcatca gggaaactat ggggtatggg gacaaacact gacactcagg 5640 ctctgcttct caggggctca atctgaatct gcccagagca agatgctgag tggcattgga 5700 ggcttcgtgc tggggctgat cttcctcggg ctgggcctta tcatccatca caggagtcag 5760 aaaggtgagg aaccccaggg gaaaagggga agatggcctg tgacccagac cctctgttca 5820 gagaggtcct gtctctagat gtagctcttt cctcctgacc ctgagaggaa gaaagctgag 5880 ctggaagtgg aaggagacag gacaaggttg gaggaggcat tggaatctga ttttactagc 5940 tgaagggtag ccctgtcaca gagctgactg atagagctta ttccagggca tccttaccat 6000 tcatcattgt ctcactggct cctttccaaa aacttcctcc attaagaggg tcagagcctc 6060 ggcctccttg ccttctagtg acaatttcct ttattttagg ggattttaaa ttagggtgct 6120 taaggacttg aagaacatga atgggaagag aatataactc taattaagtc acatgtgtca 6180 ttttcctttg gggtgagaga gtggctgttc atgtaatgag acctttctct gcataacttc 6240 cttttgtaag acctcaaggg cctccaccag caggtaatat ttcagccgtg atccagtgtg 6300 gggagggcac aggtgtaaga gggaagagca tgagctgagt gtacctgaca gtagtggtct 6360 ctgttcatgg tatatttgct gctatgagga tcaagactta ggggtgaagt ttgccagttt 6420 ctaggaatct ccagaggttg ttccccagaa ccaagcctta actttggtgg tatcttcctg 6480 ttaaatgtgg agccagaacc acggcttaaa tgttagacac taggatgatg cccactttgt 6540 gccacatgat ggtggctact gcctgtaggc attttccagt gactgaaaga ggctgctagt 6600 ggtagggatg aggtatcatc caatttccta aaaagattga acccttcata ttcaccagaa 6660 gagtaacagc tgttccccca cctcccacac atctgcatca agctgaagtt ctgtgtcttc 6720 atgagctgat ttcacctttg cacagatctt gggggaggtg atgacaatac actctggacc 6780 tcagctttgt ctgtctgaag ctgcaggagg cccctgaggg gtggggaaga tggcaggccc 6840 accagcgtac cctgtgctga tcatccctct tctctcttct tcagggctcc tgcactgact 6900 cctgagacta ttttaactgg gattggttat cacttttctg taacgcctgc ttgtccctgc 6960 ccagaattcc cagctgtctg tgtcagcctg tccccctgag atcagagtcc tacagtggct 7020 gtcacgcagc caccaggtca tctcctttca tccc 7054 //