Dbfetch
ID OX111310; SV 1; linear; genomic DNA; STD; HUM; 7100 BP.
XX
AC OX111310;
XX
PR Project:PRJEB53805;
XX
DT 07-JUL-2022 (Rel. 144, Created)
DT 05-AUG-2022 (Rel. 144, Last updated, Version 2)
XX
DE Homo sapiens HLA-DQB1 gene for MHC class II antigen, allele
DE HLA-DQB1*04:02:01:09
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RA Turner R T.;
RT ;
RL Submitted (23-JUN-2022) to the INSDC.
RL ANTHONY NOLAN RESEARCH INSTITUTE, The Royal Free Hospital, Pond Street,
RL London, NW3 2QU, United Kingdom
XX
DR MD5; 5df9105fe6d38de020e922322f8305da.
XX
FH Key Location/Qualifiers
FH
FT source 1..7100
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /clone="AN300326"
FT /db_xref="taxon:9606"
FT CDS join(430..538,1993..2262,4793..5074,5590..5700,6183..6206,
FT 6817..6830)
FT /codon_start=1
FT /transl_table=1
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:02:01:09"
FT /product="MHC class II antigen"
FT /function="antigen presenting molecule"
FT /protein_id="CAH8161916.1"
FT /translation="MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQFKG
FT MCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGRLDAEYWNSQKDILEEDR
FT ASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW
FT FRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRA
FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGPQGPPPAGLLH"
FT exon 430..538
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:02:01:09"
FT /number=1
FT intron 539..1992
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:02:01:09"
FT /number=1
FT exon 1993..2262
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:02:01:09"
FT /number=2
FT intron 2263..4792
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:02:01:09"
FT /number=2
FT exon 4793..5074
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:02:01:09"
FT /number=3
FT intron 5075..5589
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:02:01:09"
FT /number=3
FT exon 5590..5700
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:02:01:09"
FT /number=4
FT intron 5701..6182
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:02:01:09"
FT /number=4
FT exon 6183..6206
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:02:01:09"
FT /number=5
FT intron 6207..6816
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:02:01:09"
FT /number=5
FT exon 6817..6830
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*04:02:01:09"
FT /number=6
XX
SQ Sequence 7100 BP; 1792 A; 1639 C; 1716 G; 1953 T; 0 other;
gaaatatgat ccccacttaa tttgccctac tgaaagaatc ccaagtataa aaacaaccag 60
tttttaatca atattacaaa gatgtttact gttgaatcgc atttttcttt ggcttcttaa 120
aatcccttag gcattcaatc ttcagctctt ctataattga gaggaagttt tcacctcaaa 180
tgttcatcca gtgcaatttg aagacgtcac agtgccaggg actgaattga gaaccttcac 240
aaaaaaaaat gtctgcctag agacagatta ggtccttcag ctccagtgct gattggttcc 300
tttccaaagg accatccaat cctgccacgc agggaaacat ccacaggttt ttattctttc 360
tgccaggtac atcagatcca tcaggtccaa gctgtgttga ctaccactac ttttcccttc 420
gtctcaatta tgtcttggaa gaaggctttg cggatccctg gaggccttcg ggtagcaact 480
gtgaccttga tgctggcgat gctgagcacc ccggtggctg agggcagaga ctctcccggt 540
aagtgcaggg ccactgctct ccagagccgc cactctggga acaggctctc cttgggctgg 600
ggtaggggga tggtgatctc catgatctcg gacacaatct ttcatcaaca tttcctctct 660
ttggggaaag agaacgatgt tgcattccca tttatctttt agtgatgagg tgagcacagt 720
cggatcccca tcctacaggc ttaagcctgg aagagaagga gagaggagag gaaagaggag 780
acaaagtgta catttactac cagtgacagg acaaagtgag catggggtta tttttgaaga 840
tatgaatttc tccagagaca cagcaggatt tgtcatttag gcgtgcccca agactttgcc 900
tggactaaat attatgggat cctgcattgg gaaatgtaag gcagcaatgg tgtctgtagt 960
ctccgtattt gaggaaaagt tgtctgtatt cctgactgac tggagcgttt gtggaggcaa 1020
aatcttggta ctgaaggaag ctgactggat gaccacagac agggagtctt caggtttcac 1080
tgatttatgg gcaaatggtg acttgagtgg gattcagaga cccgagttgg tggactgaat 1140
ttagcagaaa ggaggatgta aagaagggaa ataacatata ttgtgaaacc actcatttca 1200
gacacagcac aatactttac ataaattctc tctcactcct tctaacatcc tgtgtgtaga 1260
tatcatgatt ttcttttaca caattatact tgtgatatgg atattctgtt acatacctgc 1320
cctagctggt gactgccaca gcttaattgg aatctagttt atcaaattca aaagcttgtg 1380
ctctttccat gaataaatgt ttctttctag gactcggagg tgtaggtcct ttctaacata 1440
aaagtgagtg aacctcacat ggcattcgga agggtaaatc caggcatggg aagggaggta 1500
ttttaccgag ggaccaagag aatacgcata tcagaacgag gacaggctta atttctggac 1560
ccgtctcatc attcccttga actcacaggt ttatgtggat aattttatct ctgaggtttc 1620
caggagctca atggaaaatg ggatttcatg cgagagcgcc ctgattccct ctaagtgcag 1680
aggtctatgt aaaatcagcc cgactgcctc ttccctcggt tcacaggctc cggcagggac 1740
agggctttcc gccctttcct gcctgcagga aggcggattc cggaagcccc cagagagggc 1800
gggcagggct gggcagggct gggcagagcc gccgggcgga tcacaagtct ggagcgccag 1860
gcacgggcgg gcgggaactg gaggtcgcgc gggcggttcc acagctccgg gccgggtcag 1920
ggcggcggct gcgggggcgg ccgggctggg gccgggccgg ggcctgactg accggccggt 1980
gattccccgc agaggatttc gtgttccagt ttaagggcat gtgctacttc accaacggga 2040
ccgagcgcgt gcggggtgtg accagataca tctataaccg agaggagtac gcgcgcttcg 2100
acagcgacgt gggggtgtat cgggcggtga cgccgctggg gcggcttgac gccgagtact 2160
ggaatagcca gaaggacatc ctggaggagg accgggcgtc ggtggacacc gtatgcagac 2220
acaactacca gttggagctc cgcacgacct tgcagcggcg aggtgagcgt cgtcgcccgt 2280
ctgcgaggcc catccttggc aggggcccag agtctctgcg ccaggagggg cgaagggggc 2340
gcggcctctg gaacctgagc cttgttcgtt ccaccccggc tgacaggagg cggcggtggg 2400
ggtgctgggg gctggtgcat cggaggggca gggacctagg gcagagcagg gggacaggca 2460
gagttggtca agctgcctag tttcgcccca tcctccccgt ccgtcggcct cgccctctgc 2520
tctgcacgtt cttgcctcgt gccttatgcg tttgcctcct cgtgccttac ctttactaag 2580
cagttctctc tgcccccaat ttccgccctc ttcccctgcc cgcccgcccg gctagcactg 2640
ccgcacccgg caaggtccac ctacacagct catgcagtgg gaagcttcag acttggcctg 2700
atggagttag ggctgcccca caactgcgcg cagggcatcc agcaattaca gttgtcaaat 2760
aagatatttt gatttttgac ttcaaattat tattcatcgt aattctgttt tcttaaatgg 2820
ctctcattca tggcggagct ctttgagatg agagtgtttt aatcattgca tgcctggtat 2880
ctgacacatt gactggcatg tggtatgagc tcaatgatct tctgttaaat taatgaataa 2940
atgtgctcag ctgccaatcc acttaggctc aagggaaagc agaggataaa tagagcctta 3000
aaaatggact tttattaatt attttctgtc attttgctta attctttaaa gtaaactctt 3060
attgacttga atcttaatag agtttgtgaa tacaaagtct gaggaaaaaa gtgtttgcta 3120
aaaataaaaa caacacttga atgatgtttg taaggcagtt ttaatttctt agaaaagctg 3180
aacaaatggc acaatgcaaa gagcagaagt tttggaataa atagattgaa gcaattaaat 3240
tattggataa aaatagtttc aggttgcttt tggcttaggt tctcccctcc ccccatcact 3300
atccacttca ggaataaaca ttctgaaagt caattttacc catttagtga gcacttattt 3360
ctagacagtt accttatcaa ataccatcta tgttacgtca tttaatctca cagttgcctg 3420
tgcattaggg attagcatca ccactttata tatcctaata ttagtacatg ataaacactt 3480
taagtaatca gcccacaagt actcaccaag accttaagcc tcccaaagta cacaatattc 3540
tttatgttct tcactacaca tctatagagt caaagggaca taaagccttg ttaaagccag 3600
ttttgactag aagcagcaat gagtctcatc ctgtttgatc tccatgttaa tgggacaaaa 3660
tgatactttc aaggcattga aaatttatga ttaatcaatc cctagtctga ctccagtgtt 3720
acctatgcag attcacaaaa cttttagttt actttacact cccttgcctt cttttgactc 3780
acatcgtagt gccagcaagt acttacattt ttgctatttt ggttctattt ccataaaatt 3840
tattttatca tcttttctca taaatttgtg ccctctattt tactcccagt ctgtgtaaga 3900
tgaacaaatc ttataaggcc acatagctga ctgtgatttc aggtggactc caggaaggag 3960
aaccaaagaa aagttcaagt ccaagcagaa accgtgattc cttccggatg atggctcaag 4020
agtgcctttt aattggggtg caacctgctg acctcagcaa atctcagcta tatttatatg 4080
ttcacattac aggctcatta acctaggctg atctctgcaa ggatctcaga atattttcta 4140
cagataacat acatgataat atctgatttc aggacaaaaa agtaattctc aatagcaagg 4200
gaatggagta gggtagacag ctagtaatta aactcacttg tatgttaaaa ataaattaag 4260
gaaaaaaaga aaatgagaga acatattact aaataaagaa agcatacatt aaatatttac 4320
tatagtttca cactaagaga ataaaggaaa tgcaataaag tggcctgaaa gataaaggat 4380
gagatgtgta aagagacagg gaaagatgtg tcattttttt actatgagca gcagtctgag 4440
aagataaagg aatcgagtta tgggcaaaca tgatgtttga tcagtgctat ttgttttgaa 4500
ggcctgccta cttttgtttc aaatattaca gacttttgaa atcacattct ttttgttttt 4560
tgctgtctgt tactagatcg cacattctgt aaaggcaggg accatggtat gttgtttatc 4620
tttggattct cagtgattgt catatttata tttgttgaat gaatcttaat ccaagacttg 4680
gactccaggt atctttccac tctggttcca aggagggacc attcccaatg gtagacgtgc 4740
tgtgtggtct cacatctcac tcctgtcttt tcctgtctgt tactgccctc agtggagccc 4800
acagtgacca tctccccatc caggacagag gccctcaacc accacaacct gctggtctgc 4860
tcagtgacag atttctatcc agcccagatc aaagtccggt ggtttcggaa tgaccaggag 4920
gagacaactg gcgttgtgtc cacccccctt attaggaacg gtgactggac cttccagatc 4980
ctggtgatgc tggaaatgac tccccagcgt ggagacgtct acacctgcca cgtggagcac 5040
cccagcctcc agaaccccat catcgtggag tggcgtaagg ggatattgag tttctgttac 5100
tatgggcccc acaagacaaa gggcagagct ccttctgacc cattccttcc catctcttat 5160
ccctgatgtc actactgagc tggggatcac aggagactag agcacctctt gctccatggc 5220
aagtgcatca gaagaatcct gatctcatca cctttccaga tgctagggaa attattctac 5280
gtactgtttc tccagatccc agtcctgata gctcggaggg acttattatt agggctggtg 5340
actgggatct tagggtttaa ggtatggatg agttcctgag gagtggagat ctgcttcccc 5400
gctctctcac ctactcacta taccgaagga cctattggct ggctttcccc tcccttaggg 5460
gtggtctgaa tggaggacta ggttcctttg acactttcac ctcctgcatc tcagactgga 5520
cttcagctcc tcagcaggga tgctatgggg tgtagggaca aacgctgaca ctcaggctct 5580
gcttcttagg ggctcagtct gaatctgccc agagcaagat gctgagtggc attggaggct 5640
tcgtgctggg gctgatcttc ctcgggctgg gccttattat ccatcacagg agtcagaaag 5700
gtgaggaacc ccaagggaaa aggggaagat gggctgtgac ccagaccctc tgttcaggga 5760
ggtcctgtct ctagatgtgg ctctttcctc ctgaccctga gaggaagaaa actgagctgg 5820
aggtgggagg agacaggaca agattggagg aggcattgga atctgatttt actagttgaa 5880
aggtagccct gtcacacagg tgactgatag agcttattcc aggatatact taccattcat 5940
cgtctcattg gctcctttcc aaaagcttcc tccattaaga gggtcagagc cttggcctcc 6000
ttgccttcta gtgacaattt tctttgtttt aggggatttt aaattagggt acttaaggcc 6060
ttgaagaaca tgagtggtaa gagaatataa ctctaattaa gtcacatgtg tcattttcct 6120
ttggggtgaa agagtggctg tttgtgtaat gagacctttc tctgcataac ttccttttgt 6180
aagacctcaa gggcctccac cagcaggtga tatttcagcc atgagccagt gtgggggggc 6240
acaggtgtaa gagggaagag catgagctga atgcacctga ccacaatggt ctctgttcat 6300
ggtatatttg ctgctatgag gatcaagact tagggtcgaa gtttgccagt ttctaggaat 6360
ctccagaggt tgttccccag aaccaagcct taactttggt ggtatcttct tgtgaaatgt 6420
gaagccagaa ccacagctta aatgttagac aagaggatga tgcccacttt gtgccacatg 6480
ttggtggcta ctgcctgtag gcattttcca gtgactgaaa gaggctgcta gtggtaggga 6540
tgaggtatca tccaattttc taaaaagatt gaacccttca tattccccag aagagtaaca 6600
gctgttccgc cacttcccac atatctgcat caagctgaag ttctgtgtcc tcacgagctg 6660
atttcacctt tgcacagatc ttgcgggagg tgacaataat acattctgga cctcagcttt 6720
ctctgtctga agctgcaggg ggcccctgag gggtggggga gattgcaggc ccaccagcgt 6780
accctgtgct gatcatccct cttctctctt cttcagggct cctgcactga ctcctgagac 6840
tattttaact gggattggtt atcacttttc tgtaacgcct gcttgtccct gcccagaatt 6900
cccagctgcc tgtgtcagcc tgtccccctg agatcagagt cctacagtgg ctgtcacgca 6960
gccaccaggt catctccttt catccccacc tcgaggctga tggctgtgac cctgcttcct 7020
gcacttaccc agagcctctg cctgtgcacg gccagctgcg tctactgagg ccccaagggg 7080
tttctgtttc tattctctcc 7100
//