Dbfetch
ID OV305486; SV 1; linear; genomic DNA; STD; HUM; 7068 BP. XX AC OV305486; XX PR Project:PRJEB49636; XX DT 06-JAN-2022 (Rel. 144, Created) DT 06-JAN-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens HLA-DQB1 gene for MHC class II antigen, allele DE HLA-DQB1*06:02:01:16 XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Lucas J., Lucas AM J.; RT ; RL Submitted (21-DEC-2021) to the INSDC. RL ANTHONY NOLAN RESEARCH INSTITUTE, 77C Fleet Road, London, NW3 2QU, United RL Kingdom XX DR MD5; 27470b2ac0f782601adfb5c159e67c84. XX FH Key Location/Qualifiers FH FT source 1..7068 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="AN300870" FT /db_xref="taxon:9606" FT CDS join(428..536,1968..2237,4787..5068,5578..5688,6153..6176, FT 6786..6799) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:16" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="CAH1028278.1" FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKG FT MCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTR FT AELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGPQGPPPAGLLH" FT exon 428..536 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:16" FT /number=1 FT intron 537..1967 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:16" FT /number=1 FT exon 1968..2237 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:16" FT /number=2 FT intron 2238..4786 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:16" FT /number=2 FT exon 4787..5068 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:16" FT /number=3 FT intron 5069..5577 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:16" FT /number=3 FT exon 5578..5688 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:16" FT /number=4 FT intron 5689..6152 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:16" FT /number=4 FT exon 6153..6176 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:16" FT /number=5 FT intron 6177..6785 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:16" FT /number=5 FT exon 6786..6799 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02:01:16" FT /number=6 XX SQ Sequence 7068 BP; 1783 A; 1632 C; 1705 G; 1948 T; 0 other; gaaatatgat ccccacctaa tttgctttat taaaaatccc aagtataata acaactggtt 60 tttaacaata ttacagagat gtttactgtt gaatcgcatt tttttctttt gcctctcaaa 120 atccccgagg cattcgttct tcagctcttc tataatcgag aggaaatttt cacctcagat 180 gttcatccag tacaatttga agacgtcaca gtgccaggca ctggattgag aaccttcaca 240 aaaaaaatgt ctgcccagag acagatgagg tccttcagct ccagtgctga ttggttcttt 300 tccgagggac catccaatcc tgccactcac ggaaacatcc acaggttttt attctttctg 360 ccaggtacat cagatccatc aggtccgagc tgtgttgact accactgctt ttcccttcgt 420 ctcagttatg tcttggaaga aggctttgcg gatccccgga gaccttcggg tagcaactgt 480 caccttgatg ctggcgatgc tgagctccct actggctgag ggcagagact ctcccggtaa 540 gtgcagggca gctgctctcc agagccgcca ctctgggaac aggctctcct tgggctgggg 600 tatgggggat ggtgatctct atgatcttgg acacaatctt tcatcaacat ttcctctctc 660 ttgggaaaga aagctatgtt gcattcccat ttatctttta gtgatgagat gaggacaatc 720 caatccccat cctacaggct taagcctgga agaggaggag agaggagaga aagaggagat 780 aaagtgtaca tttactacca gcgataggac aaagtgagca tggggttatt tttgaagata 840 tgaatttctc caaagacaca gcaggatttg tcatttaggc gtgccccaag actgcctgga 900 cttaggatta tgagatcctg cattggaaaa tgtgaggcag caatggtgtc tgtagtgtct 960 gtatttgagg aaaatttgtc tctattcctg accgagtgga gcatttgtgg aggcaaaatc 1020 ttggtgctga gggaagctga ctggctgacc acagagaggg agtcttcggg tttcactgat 1080 ttatgggcaa atggtgactt gagtgggatt cagagacccg agttaatggt ggactgaatt 1140 tagtaggaag gaggatgtaa agaagggaaa taacacatat tgtgaaacca ctcacttcag 1200 acagaacaat actttatata acttctctct cactccttct aacatcctgt gtgtagatat 1260 catgattttc ttttacacaa ttatacttgt gatatggata ttctgttaca taacctgccc 1320 aaactggtga ctgccacagt ttaattggaa tctagtttat caaattcaaa agcttgtgct 1380 ctttccatga ataaatgtct ctatctagga ctcagaggtg taggtccttt ccaacataga 1440 agggagtgaa cctcaacggg acttgggagg gtaaatctag gcatgggaag gaaggtattt 1500 tacccaggga ccaagagaat acgcgtgtca gaacgaggcc aggcttaatt cctggaccta 1560 tctcgtcatt ccgttgaact ctcagattta tgtggataac tttatctctg aggtatccag 1620 gagcttcatg aaaaatggga tttcatgcga gaacgccctg atccctctaa gtgcagaggt 1680 gcatgtaaaa tcagcccgac tgcctcttcg ctgggttcac aggctcaggc agggacaggg 1740 ctttcctccc tttcctggat gtaggaaggc agattccaga agcccgcaaa gaaggcgggc 1800 agagctgggc agagccgccg ggaggatccc aggtctggag cgccaggcac gggcgggcgg 1860 gaactggagg tcgcgcgggc ggttccacag ctccaggccg ggtcagggcg gcggctgcgg 1920 gggcggccgg gctggggcct gactgaccgg ccggtgattc cccgcagagg atttcgtgtt 1980 ccagtttaag ggcatgtgct acttcaccaa cgggacggag cgcgtgcgtc ttgtgaccag 2040 atacatctat aaccgagagg agtacgcgcg cttcgacagc gacgtggggg tgtaccgcgc 2100 ggtgacgccg caggggcggc ctgatgccga gtactggaac agccagaagg aagtcctgga 2160 ggggacccgg gcggagttgg acacggtgtg cagacacaac tacgaggtgg cgttccgcgg 2220 gatcttgcag aggagaggtg agcgtcgtcg cccctccgtg aggcccaccc ttggccgaga 2280 ccccgagttt ctgtgccggg aggggcgatg ggggcgaggt ctctgaaatc tgagcccagt 2340 tcattccacc ccaggggaaa ggaggcggcg gcggggtggt gggggcaggt gcatcggagg 2400 ggcggggacc tagggcagag cagggggaca agcagagttg gccaggctgc ctagtgtccc 2460 ccccagcctc cccgtccgtc ggcctcgtcc tccgctctgc acgtttctcg cctcgtgcct 2520 tatgtgtttg cctcctcgta ccttaccttc gctaagcagt tctctctgcc cccagtgccc 2580 accctcttcc cctgcccgcc ggcctcgcta gcactgcccc acccagcaag gcccacgtgc 2640 gcagcttgcg ccgcaggaag cttcaggctt ggcctggtgg agttagggct gccccacagc 2700 tgcgcgcagg gcatccagca attacagttg cgaaataaga tattttgact ttttggcttc 2760 aaatcattat tcatcgtaat tctgttttct taaatggcta ccactaatgg cggagatctt 2820 tgaggcgaga gactgtttaa ttattgcatg cctggtacct gacacattga ctggtatgtg 2880 gtgtgagctc aatgatcttc tgttaaattc atgaataaat gtactcagct gccaatccag 2940 ttaggttcaa gaaaaaaaca gaggcttaca aatgaacttt atcaattatt ttctaacatt 3000 ttgcttaatg ctttcaagta aactcttact gacttggatc ttaatagaat ttgtgaatac 3060 aaagtctgag gaaaatgtgt ttgctaaaaa taaaaacaat gcttgaatga tgttgtaagg 3120 cagagtttta atttcttaga aaagctgaac aaatagcact atgcaaagat cagaagtttg 3180 ggaataaata ggttgaagct attaaattat tggataaaaa tagtttcagg ttgcttttgg 3240 cctaggttat cccctccccc ccatcactat ccacttcagg aataaacatt ctgaaagtca 3300 attttaccca ttcaggaagc acttatttct agacagttgc cttatcaaat accatctatg 3360 ttatgtcatt taatctcaca gctacctgtg cattagagat tagcatcacc actttatata 3420 tcctaatatt ggtacatgat aaacacttta agtaatcagc ccacaattac tcaccaagat 3480 cttaagcctc ccaaagtaca caacattctt atgttcctca ctacacatat gtagagtcta 3540 agggatgtaa ggccttgtta aagccagttt tgaccagaag cagcaatgag tctattcctg 3600 tttgttctgt gtgttaatgc ggcattgaaa attcatgatt aatcaatccc tagtctgacc 3660 ccggtgttat ctatgcaggt tcacaaaact tttagtttgc tttacactcc cttgccttct 3720 tttgactcac atcctaatgc cagcaagtac ttatattttt gctatttcag ttttatttcc 3780 ataaaattta ttttatcatc ttttctcata aatttgtgcc ctctattttt actcccagtc 3840 tgttgaagat gaacaaatct tataaggcca catagctgac tctgatttca gttggcctcc 3900 aggaaggaga acctaaagaa aagttcaagt ccaagcagaa accatgattc cttccggatg 3960 atggctcaag agtgccattt aattggggtg ccacctgctg acctcagcaa atcccagtta 4020 tatgtatatg ttcacattac aggctcatta gcccaggccg acctctgcac ggatctcaga 4080 atattttctg tggagaacat acacgataat gtctgatttc agaacaagaa agtaattgtc 4140 aatagcaagg aaatggagta gggtagacag ctagtaatta aactcacttg tgcgttaaaa 4200 agaaattaag gaaaaaaaga aaatgagaga acatattact aaataaagaa agcacacatt 4260 aaatatttgc tatagtttca cactaagaga ataaaggaaa tgtgataaag tggcctaaaa 4320 ggaaaggatg agatgtgtaa aagaggcggg gaaagatgtg tcattttttt tactatgagc 4380 agcaatctga gaagataaag gaattgagtt gtggacaaac atgatgtttg atcaagggtt 4440 atttgttttg aaggcctgcc tacttttttt tcaaatatta caaacttttg aaataacatt 4500 ctactttttt ttcaaatatt acaaactttt gaaataacat tctttttgtt ttttgctgtc 4560 tgttactaga ttgcacattc tataaatgca gggaccatag tatgttattt atctttgaat 4620 tctcagtgat tgtcaaattt atatttgttg aatgaacctt aatccaagac ttcgactcca 4680 ggtatctttc cactctggtc caaggaggga tccttcctca tggtagacgt ggtgtgtgtt 4740 ctcacatctc actcctatgt cttttcctgt ctgttactgc cctcagtgga gcccacagtg 4800 accatctccc catccaggac agaggccctc aaccaccaca acctgctggt ctgctcggtg 4860 acagatttct atccaggcca gatcaaagtc cggtggtttc ggaatgatca ggaggagaca 4920 gccggcgttg tgtccacccc ccttattagg aatggtgact ggactttcca gatcctggtg 4980 atgctggaaa tgactcccca gcgtggagat gtctacacct gccacgtgga gcaccccagc 5040 ctccagagcc ccatcaccgt ggagtggcgt aaggggatat tgagtttctg ttactatggg 5100 cccacaagac aaagagctcc ttctgaccca ttccttccca tctcttatcc ctgatgtcac 5160 tactgagctg ggaatcacag gagactagag cacctcttgc tccatggcaa gtgcatcaga 5220 agaatcctgg tctcatcacc tttccagatg ctagggaaat tactctacat actgttgctc 5280 tgaatcccag tcctgatagc tctgagggac tgattcttag ggctggtgac tgggatctta 5340 gggtctaagg ttatggatga gttcttgaag agcagagatt tgcttcccca ctctctcacc 5400 tattcactgt atccaaggac ctattggctg gtctttcccc tccttagggg tggtctgaat 5460 ggagaactag gttcctttga tgccttcacc ttctgcacct cagactggac ttcaactcct 5520 cagcagggat gctatggggt gtggggacaa acacagacac tcagttctgc tctttagggg 5580 ctcagtctga atctgcccag agcaagatgc tgagtggcgt tggaggcttc gtgctggggc 5640 tgatcttcct tgggctgggc cttatcatcc gtcaaaggag tcagaaaggt gaggaacccc 5700 aggggaaaag gggaagatgg gctgtgaccc agaccctctg ttcagagtgg tcctgtctgt 5760 agattagctc tttcctcctg accctgagaa gaagtgcgag gagacaggac aagatgggag 5820 gaggcattgg aatctgattt tactggttga aaggtagcgc tgtcacagag ctgactgata 5880 gagcttattc cagggcatcc ttaccattca tcattgtctc actggctcct ttccaaaagc 5940 ttcctccatt aagagggtca gagcctcagc ttcctttctt tctagtgaca atttcctttg 6000 ttttagggga ttttaaatta gggtgctgaa ggcctggaag aacatgggtg ggaagagaat 6060 gtaactctaa gtcatgtgtg tcattttcct ttggggtgag agagtggctg tttgtgtaat 6120 gagacctttc tctgcataac ttccttttgt aagacctcaa gggcctccac cagcaggtaa 6180 tatttcagcc atgatccagt gtggggaggc acaggtataa gagggaagag catgagctga 6240 gtgtacctga ccacagtggt ccatgttcat ggcctatttg ctgctatgag gatcaagact 6300 taggggagaa gtttgccagt ttctaggaat ctccagacat tgttccccag aaccaagcct 6360 taactttggt ggcatcttct tgtgaaatgt ggagccagaa ccacagctta aatgttagac 6420 actaggatga tgcccacttt gtgccacatg atggtggcta ctgcctgtaa gcattttcca 6480 gtgactgaaa gaggctgcta gtggtcggga agagatatca tccaatttcc taaaaagact 6540 gaacccttca tattccccag aagaataaca gctgttcccc acctcccaca catctgcatc 6600 aagctgaagt tctgtgtcct catgagctga tttcaccttt gcacagatct tgggggaggt 6660 gatgacaata caccctggac ctcaactttc tctgtctgaa gctgcagggg gcccctgaag 6720 ggtgggggag atggcaggcc caccaggata ccctgtgctg atcaatgctc ttctctcttc 6780 tccagggctt ctgcactgac tcctgagact attttaacta ggattggtta tcactcttct 6840 gtgatgcctg cttatgcctg cccagaattc ccagctgcct gtgtcagctt gtccccctga 6900 gatcaaagtc ctacagtggc tgtcacgcag ccaccaggtc atctcctttc atccccaccc 6960 caaggcgctg gctgtgactc tgcttcctgc actgacccag agcctctgcc tgtgcatggc 7020 cagctgcgtc tactcaggtc ccaaggggtt tctgtttcta ttctttcc 7068 //