Dbfetch
ID OU943339; SV 1; linear; genomic DNA; STD; HUM; 6492 BP. XX AC OU943339; XX PR Project:PRJEB42469; XX DT 01-NOV-2021 (Rel. 144, Created) DT 01-NOV-2021 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens HLA-DQA1 gene for MHC class II antigen, allele DE HLA-DQA1*01:03:01:02 XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Turner R T.; RT ; RL Submitted (29-OCT-2021) to the INSDC. RL ANTHONY NOLAN RESEARCH INSTITUTE, The Royal Free Hospital, Pond Street, RL London, NW3 2QU, United Kingdom XX DR MD5; dc4b199889931d13d1522358a9a01f3c. XX FH Key Location/Qualifiers FH FT source 1..6492 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="APD" FT /db_xref="taxon:9606" FT CDS join(743..824,4602..4850,5264..5545,5902..6056) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:03:01:02" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="CAH0080800.1" FT /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPS FT GQFTHEFDGDEQFYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSF FT LSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCA FT LGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL" FT exon 743..824 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:03:01:02" FT /number=1 FT intron 825..4601 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:03:01:02" FT /number=1 FT exon 4602..4850 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:03:01:02" FT /number=2 FT intron 4851..5263 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:03:01:02" FT /number=2 FT exon 5264..5545 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:03:01:02" FT /number=3 FT intron 5546..5901 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:03:01:02" FT /number=3 FT exon 5902..6056 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:03:01:02" FT /number=4 XX SQ Sequence 6492 BP; 1865 A; 1399 C; 1454 G; 1774 T; 0 other; aaaaattcct ggaggttgta agccagaaca tcctgaagga tgccgtataa ctgatgacct 60 catctatcca cgaggctgct cagaaatgcc cacccctggc caggcgcggt ggctcatgcc 120 tgtaatctga gcactttggg aggctgagac gggcagatca tgaggttagg agttcaagac 180 cagcgtggcc aacatagtga aaccccgtct ctactaaaaa tacaaaaatt agctgggcgt 240 ggtggcaggt gcctgtagtc ccagctactt gggagggtga gggaggagaa tcgcttgaat 300 ccgggaggca aaggttgcag tgagccgaga ccttgccatt gtacctcagc ctgggtgaca 360 gagtgagact atgtctcaaa aaaaaagaaa aagaaaagaa aaagaaaaaa aaagaaaaac 420 acccatccct cttgcgactg gcagacatgc acacaccaga gaagattcca atttagtgtc 480 ctccctttat tcatagaaca attcctcaag tccactctga gtagaggctg catcacaagg 540 ggattgcccc gtctccttcc agggctctta atacaaactc ttcaactagt aactgagatg 600 tcaccatagg ggatttttct aattggccaa aacctgactt ggcagggttt ggtttgggtg 660 tcttcagatt tccttgtctt gaggtcctca caattactct acagctcaga acaccaactg 720 ctgaggctgc cttgggaaga ggatgatcct aaacaaagct ctgctgctgg gggccctcgc 780 tctgaccacc gtgatgagcc cctgtggagg tgaagacatt gtgggtgagt gcatgagtga 840 gggatgttct ctggagctga aaaacagtaa attgaaggaa aagagataaa gcgatttgca 900 gagaaactgt agagatttcc taagggccct ttcagtatta agacaattaa aaattatagc 960 tgttcctcct tcaggaaacc agagccccaa cctactcttt ttgttatcta tgctgttgtg 1020 ttcactaagg acgctattct gtttatatta tattcagtga ctacagcctg gaggtctcta 1080 tgtcgttcca tcatgattgc ctcaaaaatt agtgaggttt ccatcagtgg ataatttttt 1140 attattaaaa atttatgaag tgtcattctc aaatttccct gaacaacttt tgaagctttt 1200 cggatgtctc cggtggtaga tcttggggtc attccatcaa ttatgtactc tatagatatt 1260 taaaatgttg cccgtttctt tctctcagac ttactcacat ttccacatgg gaactggcac 1320 aggtggggag tgggtaaagg agtccagcag gctgaatgcc ttcaacagtc attttaccac 1380 atggtcctca cttactctca gctgcctcat atgtgtcacc tcacaagtaa tcaaataaaa 1440 tgggcatgtg gctaagtttt gtaaatagtg aaaacatgaa tgtcaatttt ttttacatat 1500 ttctattaca gatatagctt cacatttctt ttctttagca aaataaggga tcattttatt 1560 ttaaaattga gaagtagaaa aaattggtaa aataaatcat tttattctca aattatcaac 1620 ccaaattacc tgttcttcac ctcatctaat aaagtcctat aaaaagaaaa gtgggccaga 1680 caaggtggct catgcctgta atcccagcac tttgggaggc cgaggcagga ggatcatttg 1740 agcctgggag cttgagacca gcctgggcaa catagcaaga cctcatctct acaaaaaaag 1800 aaaaataaaa attagccagg catggtggtg tgtgcctgtg gtgccagcta ctcagaaggc 1860 tgccgtggga ggaccacttg agtccatgag gcggaagctg cagtgagcca tgatggcacc 1920 actacactcc agccagggca acagagagag actctgtctc aaaaagaaag aggaaagaaa 1980 gcaaggaacc aaggaaggaa ggaaggaagg agaaggaagg aaggaaaaga aaagaaaagg 2040 gaagggagga aggaaggaaa aaagaaagac ggaaagaaaa aggaaggaag gaagaaagga 2100 agcacagatt aattatttgg tctcttactc tcctctgcct ttgtcgtcca tctctttcca 2160 cctctcttga tgcattcctt tctccccctt ccctttcagg atccacctct ggctccctgc 2220 tcctttatag atatggacag tgggtttgta aagcaaaagt tgaaaagtca gatagttaaa 2280 aggggaagtg aactggaagg tactctaaac tttcacaact ttattaaccg tggctgctcc 2340 cattatgatt ttgttcggca gtggaagttt cacctgcttc tccagagcac ttggcatctt 2400 tgttccaaat ttcctttctt cagcctcaca ccagagtgcc ctggtcaggc tcggctcatc 2460 cattaggcac tatgtgggca gtgcagggga ccctccatac tgtaaagcca catgagaagg 2520 ttttaacacc ttttaaaatt agaaaaataa tggaatatta gagcctaaga aaatgtttta 2580 acttttaatt cagcctagat tatattgtct ttataccaat tcagtcataa aatataattt 2640 tccatatttt tatggaggaa ggggcccata caagcaagaa tgctcggggc tcacatgtca 2700 gaatgcagcc ttggtcatga ctgatcctgg cgtttgtatg gttctgctac ctgtgtgcct 2760 gtccgtcttc cccaaaatct gtgtggtcct cgaatatagc aactgtcatt caatacacat 2820 gtttgagcac acagtgagct aagttttaag gattcaaaga tgaaaagtca tgctgtcttc 2880 cctgcagagg gtgctcagat tagtgatgga aacagtgtgg ggtgcaggaa agcagaaggc 2940 cattgctgag cagggcagtg gacccagcag aggctgaaac aatacaagtg acttggttcc 3000 aggtgggcca gcagggtgac gtcctctagc aaaatttggc acccaagaca agtaccagaa 3060 gaaaagaaag actgcatgta ttccacatat attcatgttt gaacaaggag tcaagattta 3120 tggcaaggat aaggaggctt tgttggtgac ctgttaagac caaccagggc agtcatgctg 3180 gatagggaag aaggtgagct ggaagaggaa cagacaaact tggacagcca gatgttgaga 3240 tggaggggtt ggaggtcata atgtggtcaa aacatgttga tgagaggact cagctacaaa 3300 gttgttaact taagcagaaa cctcaaggat ggattttaga atttctccag gaagtcctaa 3360 aagataattc cttttcaggg agaaaaacaa cagaccactg caaagaccag ggaacatgaa 3420 aggataatgt agtttggctt gcttggcaga tacttttgaa ggatgttgga ctgtaaggct 3480 gtcgatatcc tcctcacaga acttactaca gtacattgta tctgttccct tacctacctg 3540 actcttccac tattcagttt gttccttaat ggtagaccat gcctgattgg tgttttacac 3600 atctccggct atgtctgaca cttgtggatg ctcagaaagt ggggaaggaa ggaaagatac 3660 gatggtaaaa ggcttacaca tgtcttgaca agaaagtcca gttcggctca tttggctgga 3720 gtcgtactgc atggctgcca ttctgctctg gcatcctcag acaagcacac tgcccattag 3780 aggaaaaagt gtgaatataa gtgttgagtc agaatgctgt agacatttag taacctcctt 3840 cacaggaaaa aaaaaagatg gggggaatga cagaaatcca aaaactagta gagcttccac 3900 ttttcatttc agaagaaatc agttgctctc ctataaggac cattactatt aacaaaacag 3960 agaccttaga aggaggcatt gtttatttat tatatatttt gtaatgttat taccaatctt 4020 gttatactct ttcttatacc ctacaattgt tagcagaaat tattttaaat taataagatc 4080 ctgcatgctt ttccttaaaa aaaaaaaaaa gaaagaaaga aagatctctg tgtagagtgt 4140 cctattctga gccagtcctg agaggaaagg aagtataatc aatttgttat taaccgatga 4200 aagaattaag tgaaagataa atctcaggaa gcagagggaa gtaaacctaa tctctgacta 4260 agaaagctaa atactatgat aactcattca ttccttcttt tgttcaatta cattatttaa 4320 tcataagtcc atgacgtgcc aggcactcag gaaatagtaa aaattggacg tgcgatattc 4380 tgcccttgtg tagcgcacac tagagtggga aagaaagtgc acttttaact ggacaactac 4440 caacatgatg aggggaggaa acaggggctg gaaatgtcca cggactgtgc cgaaaaatga 4500 agcccataat atttgaaagt cagtttcttc catcattttg tgtattaagg ttctttcttc 4560 ccctgttctc cgccttcctg cttgtcatct tcactcatca gctgaccatg ttgcctcttg 4620 tggtgtaaac ttgtaccagt tttacggtcc ctctggccag ttcacccatg aatttgatgg 4680 agatgagcag ttctacgtgg acctggagaa gaaggagact gcctggcggt ggcctgagtt 4740 cagcaaattt ggaggttttg acccgcaggg tgcactgaga aacatggctg tggcaaaaca 4800 caacttgaac atcatgatta aacgctacaa ctctaccgct gctaccaatg gtatgcgtcc 4860 accattctgc ctctctttac ttaagctatc ccttcatacc agggttcatt attttcttcc 4920 caagaggtcc ccagatcttc ttatggcaat tgctgaaatt ttatcatctc ccatctctaa 4980 aatcacatat tcccatgtaa tacaagggtc tttccattat gcattcagca aatccttcta 5040 ggagaggtct catcaacctc ctactttatt aaacatgccc acagagagaa gggcacagga 5100 ataaagcaga ggcaatgtgt cattgctccc aagcagaagg taaataagac ctctttgact 5160 atcaggtggt gaaatgctgg taggagggct cttccaggat gtaatgcaga acttcagggc 5220 agagctattc acacttcaca ccagtgctgt ttcctcacca cagaggttcc tgaggtcaca 5280 gtgttttcca agtctcccgt gacactgggt cagcccaaca ccctcatctg tcttgtggac 5340 aacatctttc ctcctgtggt caacatcaca tggctgagca atgggcacgc agtcacagaa 5400 ggtgtttctg agaccagctt cctctccaag agtgatcatt ccttcttcaa gatcagttac 5460 ctcaccttcc tcccttctgc tgatgagatt tatgactgca aggtggagca ctggggcctg 5520 gaccagcctc ttctgaaaca ctggggtaag gatgagtttc atcatttttt gattctttct 5580 tgtctgtcag gttcagaact tcctgccttt tactcctata tccaaaaact tgttttccac 5640 acttcatggg tttcttttct gtctcacttt tttttttgaa agaataaagc aaaaaaagca 5700 gagatttatt gaaaatgaaa gtacactcta caggatggga gtgggcctgc cacttcatgg 5760 ttttctaatg atagacttca ctctcctccc taagctgggg gccttgagtc tttgtagagc 5820 caaccctgta ccccatccca tcccacacac atgcacatga gcaaactctg cattctgacc 5880 tcaacaactt cacttccaca gagcctgaga ttccagcccc tatgtcagag ctcacagaga 5940 ctgtggtctg tgccctgggg ttgtctgtgg gcctcgtggg cattgtggtg ggcactgtct 6000 tcatcatcca aggcctgcgt tcagttggtg cttccagaca ccaagggccc ttgtgaatcc 6060 catcctggaa gggaaggtaa gattgagact ggttacagtt gaagcggcag tatgaaagga 6120 aggaaagtgg gagggcgttg tggacatgaa tgtggtttaa agttgtaggg gaattgggaa 6180 gtggcatgat gatgacacag gacccccctc agacccattg atctcatgtc tgccctgttg 6240 caggtgcatc gccatctaca ggaacagaag aatggacttg ctaaatgacc tagcactatt 6300 ctctggcccg atttatcata tcccttttct cctccaaatg tttctcctct caccttttct 6360 ctgggactta agctgctata tcccctcaga gctcacaaat gcctttacat tctttccctg 6420 acctcctgat tttttttttc ttttctcaaa tgttacctac aaagacatgc ctggggtaag 6480 ccacccggct cc 6492 //