Dbfetch
ID OU928431; SV 1; linear; genomic DNA; STD; HUM; 3895 BP.
XX
AC OU928431;
XX
PR Project:PRJEB48185;
XX
DT 14-MAR-2023 (Rel. 144, Created)
DT 15-MAR-2023 (Rel. 144, Last updated, Version 1)
XX
DE Homo sapiens, HLA-C pseudogene, cell line DKMS-LSL_ID12275928_C_1, null
DE allele HLA-C*05:new
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RA Albrecht V., Schmidt H. A., Klussmeier A., Lange V., Putke K.;
RT ;
RL Submitted (27-OCT-2021) to the INSDC.
RL DKMS LIFE SCIENCE LAB, Research & Development, St. Petersburger Str. 2,
RL Saxony, 01069 Dresden, Germany
XX
DR MD5; fe4fccb8c43ab9bcd8a3c005706d40c2.
XX
FH Key Location/Qualifiers
FH
FT source 1..3895
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /cell_line="DKMS-LSL_ID12275928_C_1"
FT /db_xref="taxon:9606"
FT exon 1..568
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=1
FT CDS join(496..568,699..968,1215..1492,2080..2355,2477..2596,
FT 3036..3068,3176..3223,3388..3392)
FT /codon_start=1
FT /transl_table=1
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /note="MHC class I antigen null allele"
FT /pseudogene="allelic"
FT intron 569..698
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=1
FT exon 699..968
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=2
FT intron 969..1214
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=2
FT exon 1215..1492
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=3
FT intron 1493..2079
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=3
FT exon 2080..2355
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=4
FT intron 2356..2476
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=4
FT exon 2477..2596
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=5
FT intron 2597..3035
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=5
FT exon 3036..3068
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=6
FT intron 3069..3175
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=6
FT exon 3176..3223
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=7
FT intron 3224..3387
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=7
FT exon 3388..3895
FT /gene="HLA-C"
FT /allele="HLA-C*05:new"
FT /number=8
XX
SQ Sequence 3895 BP; 764 A; 1086 C; 1203 G; 842 T; 0 other;
ttattttgct ggatgtagtt taatattacc tgaggtaagg taaggcaaag agtgggaggc 60
agggagtcca gttcagggac ggggattcca ggagaagtga aggggaaggg gctgggcgca 120
gcctgggggt ctctccctgg tttccacaga cagatccttg gccaggactc aggcacacag 180
tgtgacaaag atgcttggtg taggagaaga gggatcagga cgaagtccca ggtcccgggc 240
ggggctctca gggtctcagg ctccaagggc cgtgtctgca ctggggaggc gccgcgttga 300
ggattctcca ctcccctgag tttcacttct tcttccaacc tgcgtcgggt ccttcttcct 360
gaatactcat gacgcgtccc caattcccac tcccattggg tgtcgggttc tagagaagcc 420
aatcagcgtc tccgcagtcc cggttctaaa gtccccagtc acccacccgg actcggattc 480
tccccagacg ccgagatgcg ggtcatggcg ccccgaaccc tcatcctgct gctctcggga 540
gccctggccc tgaccgagac ctgggcctgt gagtgcgagg ttgggaggga aacggcctct 600
gcggagagga gcgaggggcc cgcccggcga gggcgcagga cccggggagc cgcgcaggga 660
ggagggtcgg gcgggtctca gcccctcctc gcccccaggc tcccactcca tgaggtattt 720
ctacaccgcc gtgtcccggc ccggccgcgg agagccccgc ttcatcgcag tgggctacgt 780
ggacgacacg cagttcgtgc agttcgacag cgacgccgcg agtccaagag gggagccgcg 840
ggcgccgtgg gtggagcagg aggggccgga gtattgggac cgggagacac agaagtacaa 900
gcgccaggca cagactgacc gagtgaacct gcggaaactg cgcggctact acaaccagag 960
cgaggccggt gagtgacccc ggcccggggc gcaggtcacg acccctcccc atcccccacg 1020
gacggcccgg gtcgccccga gtctcccggt ctgagatcca ccccgaggct gcggaacccg 1080
cccagaccct cgaccggaga gagccccagt cacctttacc cggtttcatt ttcagtttag 1140
gccaaaatcc ccgcgggttg gtcggggctg gggcggggct cgggggacgg ggctgaccac 1200
gggggcgggg ccagggtctc acaccctcca gaggatgtat ggctgcgacc tggggcccga 1260
cgggcgcctc ctccgcgggt ataaccagtt cgcctacgac ggcaaggatt acatcgccct 1320
gaatgaggac ctgcgctcct ggaccgccgc ggacaaggcg gctcagatca cccagcgcaa 1380
gtgggaggcg gcccgtgagg cggagcagcg gagagcctat acctggaggg cacgtgcgtg 1440
gagtggctcc gcagatacct ggagaacggg aagaagacgc tgcagcgcgc gggtaccagg 1500
ggcagtgggg agccttcccc atctcctgta gatctcccgg gatggcctcc cacgaggagg 1560
ggaggaaaat gggatcagcg ctggaatatc gccctccctt gaatggagaa tgggatgagt 1620
tttcctgagt ttcctctgag ggccccctct gctctctagg acaattaagg gatgaagtcc 1680
ttgaggaaat ggaggggaag acagtccctg gaatactgat caggggtccc ctttgaccac 1740
tttgaccact gcagcagctg tggtcaggct gctgaccttt ctctcaggcc ttgttctctg 1800
cctcacgctc aatgtgttta aaggtttgat tccagctttt ctgagtcctt cggcctccac 1860
tcaggtcagg accagaagtc gctgttcctc cctcagagac tagaactttc caatgaatag 1920
gagattatcc caggtgcctg tgtccaggct ggcgtctggg ttctgtgccc ccttccccac 1980
cccaggtgtc ctgtccattc tcaggatggt cacatgggca ctgttggagt gtcgcaagag 2040
agatacaaag tgtctgaatt ttctgactct tcccgtcaga acacccaaag acacacgtga 2100
cccaccatcc cgtctctgac catgaggcca ccctgaggtg ctgggccctg ggcttctacc 2160
ctgcggagat cacactgacc tggcagcggg atggcgagga ccaaactcag gacaccgagc 2220
ttgtggagac caggccagca ggagatggaa ccttccagaa gtgggcagct gtggtggtgc 2280
cttctggaga agagcagaga tacacgtgcc atgtgcagca cgaggggctg ccagagcccc 2340
tcaccctgag atggggtaag gagggggatg aggggtcatg tgtcttctca gggaaagcag 2400
aagtcctgga gcccttcagc cgggtcaggg ctgaggcttg ggggtcaggg cccctcacct 2460
tcccctcctt tcccagggcc atcttcccag cccaccatcc ccatcgtggg catcgttgct 2520
ggcctggctg tcctggctgt cctagctgtc ctaggagctg tgatggctgt tgtgatgtgt 2580
aggaggaaga gctcaggtag ggaaggggtg aggagtgggg tctgggtttt cttgtcccac 2640
tgggagtttc aagccccagg tagaagtgtg ccccacctcg ttactggaag caccatccac 2700
acatgggcca tcccagcctg ggaccctgtg tgctagcact tactctgttg tgaagcacat 2760
gacaatgaag gacagatgta tcaccttgat gattatggtg ttggggtcct tgattccagc 2820
attcatgagt caggggaagg tccctgctaa ggacagacct taggagggca gttgctccag 2880
aacccacagc tgctttcccc gtgtttcctg atcctgccct gggtctgcag tcatagttct 2940
ggaaacttct cttgggtcca agactaggag gttcccctaa gatcgcatgg ccctgcctcc 3000
tccctgtccc ctcacagggc attttcttcc cacaggtgga aaaggaggga gctgctctca 3060
ggctgcgtgt aagtgatggc ggtgggcgtg tggaggagct cacccacccc ataattcctc 3120
ttgtcccaca tctcctgcgg gctctgacca ggtctttttt tttgttctac cccagccagc 3180
aacagtgccc agggctctga tgagtctctc atcgcttgta aaggtgagat tctggggagc 3240
tgaagtggtc gggggtgggg cagagggaaa aggcctaggt aatggggatc ctttgattgg 3300
gacgtttcga atgtgtggtg agctgttcag agtgtcatca cttaccatga ctgacctgaa 3360
tttgttcatg actattgtgt tctgtagcct gagacagctg cctgtgtggg actgagatgc 3420
aggatttctt cacacctttc ctttgtgact tcaagagcct ctggcatctc tttctgcaaa 3480
ggcatctgaa tgtgtctgcg ttcctgttag cataatgtga ggaggtggag agacagccca 3540
cccccgtgtc caccgtgacc cctgtcccca cactgacctg tgttccctcc ccgatcatct 3600
ttcctgttcc agagaagtgg gctggatgtc tccatctctg tctcaacttt acgtgtactg 3660
agctgcaact tcttacttcc ctactgaaaa taagaatctg aatataaatt tgttttctca 3720
aatatttgct atgagaggtt gatggattaa ttaaataagt caattcctgg aagttgagag 3780
agcaaataaa gacctgagaa ccttccagaa tccgcatgtt cgctgtgctg agtctgttgc 3840
aggtgggggt ggggaaggct gtgaggagac gagtgtggac ggggcctgtg cctag 3895
//