Dbfetch
ID OQ556878; SV 1; linear; genomic DNA; STD; HUM; 4203 BP.
XX
AC OQ556878;
XX
DT 14-JUN-2023 (Rel. 144, Created)
DT 15-JUN-2023 (Rel. 144, Last updated, Version 1)
XX
DE Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*06:NEW allele,
DE complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-4203
RA Oliveira R.R., Abreu M.I.A., Biccas M.;
RT ;
RL Submitted (28-FEB-2023) to the INSDC.
RL Laboratory, LIG Biologia Molecular e Imunogenetica, Rua Coronel Schwab
RL Filho, 117, Bento Ferreira, Vitoria, ES 29050780, Brazil
XX
DR MD5; d9b919104156482cecd70adc9efe4805.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: TypeStream Visual v. 3.0
CC Assembly Name :: HLA-C*06:NEW
CC Coverage :: Full gene
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..4203
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene 1..4203
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT mRNA join(1..568,699..968,1215..1490,2078..2353,2475..2594,
FT 3034..3066,3174..3221,3386..4203)
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /product="MHC class I antigen"
FT exon 1..568
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=1
FT 5'UTR 1..495
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT CDS join(496..568,699..968,1215..1490,2078..2353,2475..2594,
FT 3034..3066,3174..3221,3386..3390)
FT /codon_start=1
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /product="MHC class I antigen"
FT /protein_id="WGZ74010.1"
FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFDTAVSRPGRGEPR
FT FISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVNLRK
FT LRGYYNQSEDGSHTLQWMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA
FT AQITQRKWEAAREAEQWRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVMCRRKSSGG
FT KGGSCSQAASSNSAQGSDESLIACKA"
FT intron 569..698
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=1
FT exon 699..968
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=2
FT intron 969..1214
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=2
FT exon 1215..1490
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=3
FT intron 1491..2077
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=3
FT exon 2078..2353
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=4
FT intron 2354..2474
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=4
FT exon 2475..2594
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=5
FT intron 2595..3033
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=5
FT exon 3034..3066
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=6
FT intron 3067..3173
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=6
FT exon 3174..3221
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=7
FT intron 3222..3385
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=7
FT exon 3386..4203
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
FT /number=8
FT 3'UTR 3391..4203
FT /gene="HLA-C"
FT /allele="HLA-C*06:NEW"
XX
SQ Sequence 4203 BP; 809 A; 1193 C; 1268 G; 933 T; 0 other;
ttattttgct ggatgtagtt taatattacc tgaggtaagg taaggcaaag agtgggaggc 60
agggagtcca gttcagggac ggggattcca ggagaagtga aggggaaggg gctgggcgca 120
gcctgggggt ctctccctgg tttccacaga cagatccttg gccaggactc aggcacacag 180
tgtgacaaag atgcttggtg taggagaaga gggatcagga cgaagtccca ggtcccgggc 240
ggggctctca gggtctcagg ctccaagggc cgtgtctgca ctggggaggc gccgcgttga 300
ggattctcca ctcccctgag tttcacttct tctcccaacc tgcgtcgggt ccttcttcct 360
gaatactcat gacgcgtccc caattcccac tcccattggg tgtcgggttc tagagaagcc 420
aatcagcgtc tccgcagtcc cggttctaaa gtccccagtc acccacccgg actcggattc 480
tccccagacg ccgagatgcg ggtcatggcg ccccgaaccc tcatcctgct gctctcggga 540
gccctggccc tgaccgagac ctgggcctgt gagtgcgggg ttgggaggga aacggcctct 600
gcggagagga gcgaggggcc cgcccggcga gggcgcagga cccggggagc cgcgcaggga 660
ggtgggtcgg gcgggtctca gcccctcctc gcccccaggc tcccactcca tgaggtattt 720
cgacaccgcc gtgtcccggc ccggccgcgg agagccccgc ttcatctcag tgggctacgt 780
ggacgacacg cagttcgtgc ggttcgacag cgacgccgcg agtccgagag gggagccccg 840
ggcgccgtgg gtggagcagg aggggccgga gtattgggac cgggagacac agaagtacaa 900
gcgccaggca caggctgacc gagtgaacct gcggaaactg cgcggctact acaaccagag 960
cgaggacggt gagtgacccc ggcccggggc gcaggtcacg acccctcccc atcccccacg 1020
gacggcccgg gtcgccccga gtctcccggt ctgagatcca ccccgaggct gcggaacccg 1080
cccagaccct cgaccggaga gagccccagt cacctttacc cggtttcatt ttcagtttag 1140
gccaaaatcc ccgcgggttg gtcggggctg gggcggggct cgggggacgg ggctgaccac 1200
gggggcgggg ccagggtctc acaccctcca gtggatgtat ggctgcgacc tggggcccga 1260
cgggcgcctc ctccgcgggt atgaccagtc cgcctacgac ggcaaggatt acatcgccct 1320
gaacgaggac ctgcgctcct ggaccgccgc ggacacggcg gctcagatca cccagcgcaa 1380
gtgggaggcg gcccgtgagg cggagcagtg gagagcctac ctggagggca cctgcgtgga 1440
gtggctccgc agatacctgg agaacgggaa ggagacgctg cagcgcgcgg gtaccagggg 1500
cagtggggag ccttccccat ctcctgtaga tctcccggga tggcctccca cgaggagggg 1560
aggaaaatgg gatcagcgct agaatatcgc cctcccttga atggagaatg ggatgagttt 1620
tcctgagttt cctctgaggg ccccctctgc tctctaggac aattaaggga tgaagtcctt 1680
gaggaaatgg aggggaagac agtccctgga atactgatca ggggtcccct ttgaccactt 1740
tgaccactgc agcagctgtg gtcaggctgc tgacctttct ctcaggcctt gttctctgcc 1800
tcacgctcaa tgtgtttaaa ggtttgattc cagcttttct gagtccttcg gcctccactc 1860
aggtcaggac cagaagtcgc tgttcctccc tcagagacta gaactttcca atgaatagga 1920
gattatccca ggtgcctgtg tccaggctgg cgtctgggtt ctgtgccccc ttccccaccc 1980
caggtgtcct gtccattctc aggatggtca catgggcgct gttggagtgt cgcaagagag 2040
atacaaagtg tctgaatttt ctgactcttc ccgtcagaac acccaaagac acacgtgacc 2100
caccatcccg tctctgacca tgaggccacc ctgaggtgct gggccctggg cttctaccct 2160
gcggagatca cactgacctg gcagcgggat ggcgaggacc aaactcagga caccgagctt 2220
gtggagacca ggccagcagg agatggaacc ttccagaagt gggcagctgt ggtggtgcct 2280
tctggagaag agcagagata cacgtgccat gtgcagcacg aggggctgcc agagcccctc 2340
accctgagat ggggtaagga gggggatgag gggtcatgtg tcttctcagg gaaagcagaa 2400
gtcctggagc ccttcagccg ggtcagggct gaggcttggg ggtcagggcc cctcaccttc 2460
ccctcctttc ccagagccat cttcccagcc caccatcccc atcgtgggca tcgttgctgg 2520
cctggctgtc ctggctgtcc tagctgtcct aggagctgtg atggctgttg tgatgtgtag 2580
gaggaagagc tcaggtaggg aaggggtgag gagtggggtc tgggttttct tgtcccactg 2640
ggagtttcaa gccccaggta gaagtgtgcc ccacctcgtt actggaagca ccatccacac 2700
atgggccatc ccagcctggg accctgtgtg ctagcactta ctctgttgtg aagcacatga 2760
caatgaagga cagatgtatc accttgatga ttatggtgtt ggggtccttg attccagcat 2820
tcatgagtca ggggaaggtc cctgctaagg acagacctta ggagggcagt tgctccagaa 2880
cccacagctg ctttccccgt gtttcctgat cctgccctgg gtctgcagtc atagttctgg 2940
aaacttctct tgggtccaag actaggaggt tcccctaaga tcgcatggcc ctgcctcctc 3000
cctgtcccct cacagggcat tttcttccca caggtggaaa aggagggagc tgctctcagg 3060
ctgcgtgtaa gtgatggcgg tgggcgtgtg gaggagctca cccaccccat aattcctctt 3120
gtcccacatc tcctgcgggc tctgaccagg tctttttttt tgttctaccc cagccagcaa 3180
cagtgcccag ggctctgatg agtctctcat cgcttgtaaa ggtgagattc tggggagctg 3240
aagtggtctg gggtggggca gagggaaaag gcctaggtaa tggggatcct ttgattggga 3300
cgtttcgaat gtgtggtgag ctgttcagag tgtcatcact taccatgact gacctgaatt 3360
tgttcatgac tattgtgttc tgtagcctga gacagctgcc tgtgtgggac tgagatgcag 3420
gatttcttca cacctctcct ttgtgacttc aagagcctct ggcatctctt tctgcaaagg 3480
catctgaatg tgtctgcgtt cctgttagca taatgtgagg aggtggagag acagcccacc 3540
cccgtgtcca ccgtgacccc tgtccccaca ctgacctgtg ttccctcccc gatcatcttt 3600
cctgttccag agaagtgggc tggatgtctc catctctgtc tcaactttac gtgtactgag 3660
ctgcaacttc ttacttccct actgaaaata agaatctgaa tataaatttg ttttctcaaa 3720
tatttgctat gagaggttga tggattaatt aaataagtca attcctggaa gttgagagag 3780
caaataaaga cctgagaacc ttccagaatc cgcatgttcg ctgtgctgag tctgttgcag 3840
gtgggggtgg ggaaggctgt gaggagacga gtgtggacgg ggcctgtgcc tagttgctgt 3900
tcagttcttc atgggcttta tgtggtcagt cctcagctgg gtcaccttca ctgctccatt 3960
gtccttgtcc cttcagtgga aacttgtcca gcgggagctg tgaccacaga ggctcacaca 4020
tcgcccaggg cagcccctgc acacgggagt ccctgtgctt tctgagacaa attttcagac 4080
ccattcagct cctgccctcc ttctagggct cctcttctgc tttggtctcc tgtcctctct 4140
cccttccctg attccagtaa tcttcgtgct gactccaatc ccaactcatg aatctaaagc 4200
aga 4203
//