Dbfetch
ID OQ512944; SV 1; linear; genomic DNA; STD; HUM; 5680 BP. XX AC OQ512944; XX DT 23-JAN-2024 (Rel. 144, Created) DT 24-JAN-2024 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQA1) gene, HLA-DQA1*01var allele, DE complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5680 RA Marin L.A.; RT ; RL Submitted (23-FEB-2023) to the INSDC. RL Inmunologia, Hospital Universitario de Albacete, Hermanos Falco, 37, RL Albacete, Albacete 02006, Spain XX DR MD5; 3dd8cf87a768ae179fa407d9a87577e1. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.28.1.27684 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5680 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene 1..5680 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT exon 1..347 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=1 FT 5'UTR 1..265 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT CDS join(266..347,4120..4368,4782..5063,5422..5576) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /product="MHC class II antigen" FT /protein_id="WEX98185.1" FT /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPS FT GQYTHEFDGDEEFYVDLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSF FT LSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCA FT LGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL" FT intron 348..4119 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=1 FT exon 4120..4368 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=2 FT intron 4369..4781 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=2 FT exon 4782..5063 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=3 FT intron 5064..5421 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=3 FT exon 5422..5680 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /number=4 FT 3'UTR 5577..5680 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" XX SQ Sequence 5680 BP; 1648 A; 1192 C; 1259 G; 1581 T; 0 other; gtcctccctt tattcataga acaattcctc aagtccactc tgagtagagg ctgcatcaca 60 aggggattgc cccctctcct tccagggctc ttaatacaaa ctcttcaact agtaactgag 120 atgtcaccat aggggatttt tctaattggc caaaacctga cttggcaggg tttggtttgg 180 gtgtcttcag atttccttgt cttgaggtcc tcacaattac tctacagctc agaacaccaa 240 ctgctgaggc tgccttggga agaggatgat cctaaacaaa gctctgctgc tgggggccct 300 cgctctgacc accgtgatga gcccctgtgg aggtgaagac attgtgggtg agtgcatgag 360 tgagggatgt tctctggagc tgaaaaacag taaattgaag gaaaagagat aaagcgattt 420 gcagagaaac tgtagagatt tcctaagggc cctttcagta ttaagacaat taaaaattat 480 agctgttcct ccttcaggaa accagagccc caacctactc tttttgttat ctatgctgtt 540 gtgttcacta aggacgctat tctgtttata ttatattcag tgactacagc ctggaggtct 600 ctatgtcgtt ccatcatgat tgcctcaaaa attagtgagg tttccatcag tggataattt 660 tttattatta aaaatttatg aagtgtcatt ctcaaatttc cctgaacaac ttttgaagct 720 tttcggatat ctccggtggt agatcttggg gtcattccat caattatgta ctctatagat 780 atttaaaatg ttgcccattt ctttctctca gacttactta catttccaca tgggaactgg 840 cacaggtggg gagtgggtaa aggagtccag caggctgaat gccttcaaca atcattttac 900 cacatggtcc tcacttactc tcagctgcct catatgtgtc acctcacaag taatcaaata 960 aaatgggcat gtggctaagc tttgtaaata gtgaaaacat gaatgtcaat tttttttaca 1020 tatttctatt acagatatag cttcacattt cttttcttta gcaaaataag ggatcatttt 1080 attttaaaat tgagaagtag aaaaaattgg taaaataaat cattttattc tcaaattatc 1140 aacccaaatt acctgttctt cacctcatct aataaagtcc tataaaaaga aaagtgggcc 1200 agacaaggtg gctcatgcct gtaatcccag cactttggga ggccgaggca ggaggatcat 1260 ttgagcctgg gagcttgaga ccagcctggg caacatagca agacctcatc tctacaaaaa 1320 aagaaaaata aaaattagcc aggcatggtg gtgtgtgcct gtggtgccag ctactcagaa 1380 ggctgccgtg ggaggaccac ttgagtccat gaggcggaag ctgtagtgag ccatggtggc 1440 accactacac tccagccagg gcaacagaga gagacgctgt ctcaaaaaga aagaggaaag 1500 aaagcgagga aggaaggaag gaaggaagga gaaggaagga aggaaggaaa agaaaagaaa 1560 agggaaggga ggaaggaagg aaaaaagaaa gacagaaaga aagaggaagg aaagaagaaa 1620 ggaagcacag ataattattt ggtctcttac tctcctctgc ctttgtcgtc catctctttc 1680 cacctctctt catgcatccc tttctccctc ttccctttca ggatccatct ctgactccct 1740 gctcctttat agagatggac agtgggtttg taaaacaaaa gttgaaaagt cagatagtta 1800 aaaggggaag tgaactggaa ggtaccttaa actttcacaa ctttattaac cgtggctgct 1860 cccattatga ttttgttcgg cagtggaagt ttcacctgct tctccagagc acttggcgtc 1920 tttgttccaa atttcctttc ttcaacctca caccagagtg ccctggtcag gcttggctca 1980 ttcattaggc acaatgtggg cagtgcaggg gaccctccat actgtaaagc cacatgagaa 2040 ggttttaact cgttttaaaa ttagaaaaat aatggaatat tagagcctaa gaaaatgttt 2100 taacttttaa ttcagcctag attatattgt ctttatacca attcagtcat aaaatataat 2160 tttccatatt tttgtggagg aagaggccca tacaagcaag aatgctcggg gctcacatgt 2220 cagaatgcag ccttggtcat gactgatcct ggccttcgta tggttctgct acctgtgtgc 2280 ctgcccgtct tccccaaaat ctatgtggtc ctcgaatata gcaactgtca ttcaacacac 2340 atgtttgagc atacagtgag ctaagtttta aggattcaaa gatgaaaaat catgctgtct 2400 tccctgcaga gggtgctcag attagtgatg gaaacagtat ggggtgcagg aaagcagaag 2460 gccattgctg agcagggcag tggacccagc agaggctgaa acaatacaag tgacttggtt 2520 ccaggtgggc cagcagggtg acgtcctcta gcaaaatttg gcacccaaga caagtaccag 2580 aagaaaagaa agactgcatg tattccacat atattcatgt ttgaacaagg agtcaagatt 2640 tatggcaagg ataaggaggc tttgttggtg acctgttaag accaaccagg gcagtcatgc 2700 tggataggga agaaggtgag ctggaagagg aacagacaaa cttggacagc cagatgttga 2760 gacggagggg ttggaggtca taatgtggtc aaaaacatgt tgatgagagg actcagctac 2820 aaagttgtta acttaagcag aaacctcaag gatggatttt agaatttctc caggaagtcc 2880 taaaagataa ttccatttca gggagaaaaa caacagacca ctgcaaagac cagggaacat 2940 gaaaggataa tgtagtttgt cttgcttggc agatactttt gaaggatgtt ggactgtaag 3000 gctgtcgata tcctcctcag agaacttact acagtacatt gtatctgttc ccttacctac 3060 ctgactcttc cactattcag tttgttcctt aatggtagac catgcctgat tggtgtttta 3120 cacatctccg gctatgtctg acacttgtgg atgctcagaa agtggggaag gaaggaaaga 3180 tacgatggta aaaggcttac acatgtcttg acaaaaaagt ccagtttggc tcatttggct 3240 ggagtcgtac tgcatggctg ccattctgct ctggcatcct cagacaagca cactgcccat 3300 tagaggaaaa agtgtgaata taagtgttga gtcagaatgc tgtagacatt tagtaacctc 3360 cttcacagga aaaaaaaaaa ggtgggggga atgacagaaa tccaaaaact agtagagctt 3420 ccacttttca tttcagaaga aatcagttgc tctcctctaa ggaccattac tattaacaaa 3480 acagagacct tagaaggagg cattgtttat ttattatata ttttgtaatg ttattaccaa 3540 tcttgttata ctctttctta taccctacaa ttgttagcag aaattatttt aaattaataa 3600 gatcctgcat gcttttcctt taaaaaaaaa aaaaaagaaa gatctctgtg tagagtgtcc 3660 tattctgagc cagtcctgag aggaaaggaa gtataatcaa tttgttatta accaatgaaa 3720 gaattaagtg aaagataaat ctcaggaagc agagggaagt aaacctaatt tctgactaag 3780 aaagctaaat actatgataa cttattcatt ccttcttttg ttcaattaca ttatttaatc 3840 ataagtccat gacgtgccag gcactcagga aatagtaaaa attggacatg tgatattctg 3900 cccttgtgta gcgcacacta gagtgggaaa gaaagtgcac ttttaactgg acaactacca 3960 acatgaagag gggaggaagc aggggctgga aatgtccaca gactgtgcca aaaaatgaag 4020 cccataatat ttgaaagtca gtttcttcca tcattttgtg tattaaggtt ctttcttccc 4080 ctgttctccg cctacctgct tgtcatcttc actcatcagc tgaccacgtt gcctcttgtg 4140 gtgtaaactt gtaccagttt tacggtccct ctggccagta cacccatgaa tttgatggag 4200 atgaggagtt ctacgtggac ctggagagga aggagactgc ctggcggtgg cctgagttca 4260 gcaaatttgg aggttttgac ccgcagggtg cactgagaaa catggctgtg gcaaaacaca 4320 acttgaacat catgattaaa cgctacaact ctaccgctgc taccaatggt atgcgtccac 4380 cattctgcct ctctttactt aagctatccc tccataccag ggttcattat tttcttccca 4440 agaggtcccc agatcttctt atggcaattg ctgaaatttt atcatctccc atctctaaaa 4500 tcacatattc ccatgtaata caagggtctt tccattatgc attcagcaaa tccttctagg 4560 agaggtctca tcaacctcct actttattaa acatgcccac agagagaagg gcacaggaat 4620 aaagcagagg caatgtgtcg ttgctcccaa gcagaaggta aataagacct ctttgactat 4680 caggtggtga aatgctggta ggagggctct tccaggatgt aatgcagaac ttcagggcag 4740 agctattcac acttcacacc agtgctgttt cctcaccaca gaggttcctg aggtcacagt 4800 gttttccaag tctcccgtga cactgggtca gcccaacacc ctcatttgtc ttgtggacaa 4860 catctttcct cctgtggtca acatcacatg gctgagcaat gggcagtcag tcacagaagg 4920 tgtttctgag accagcttcc tctccaagag tgatcattcc ttcttcaaga tcagttacct 4980 caccttcctc ccttctgctg atgagattta tgactgcaag gtggagcact ggggcctgga 5040 ccagcctctt ctgaaacact ggggtaagga tgagtttcat cattttttga ttctttcttg 5100 tctgtcaagt tcagaacttc ctgcctttta ctcctatatc caaaaacttg ttttccacac 5160 ttcatgggtt tcttttctgt ctctcttttt tttttttgaa agaataaagc aaaaaaagca 5220 gagatttatt gaaaatgaaa gtacactcta caggatggga gtgggcctgc cacttcatgg 5280 ttttctaatg atagacttca ctcttctccc taagctgggg gccttgagtc tttgcagagc 5340 caaccctcta ccccatccca tcccacacac atgcacatga gcaaactctg cattctgacc 5400 tcaacaactt cacttccaca gagcctgaga ttccagcccc tatgtcagag ctcacagaga 5460 ctgtggtctg cgccctgggg ttgtctgtgg gcctcgtggg cattgtggtg ggcactgtct 5520 tcatcatcca aggcctgcgt tcagttggtg cttccagaca ccaggggcca ttgtgaatcc 5580 catcctggaa gggaaggtaa gattgagact ggttacagtt gaagcggcag tatgaaagga 5640 aggaaagtgg gagggcgttg tggacatgaa tgtggttgaa 5680 //