Dbfetch
ID OQ087130; SV 1; linear; genomic DNA; STD; HUM; 5749 BP.
XX
AC OQ087130;
XX
DT 14-JUN-2023 (Rel. 144, Created)
DT 15-JUN-2023 (Rel. 144, Last updated, Version 1)
XX
DE Homo sapiens MHC class II antigen (HLA-DQB1) gene, HLA-DQB1*06 allele,
DE partial cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-5749
RA Loginova M., Paramonov I.;
RT ;
RL Submitted (16-DEC-2022) to the INSDC.
RL Research Laboratory of Applied Immunogenetics, Kirov Scientific Research
RL Institute of Hematology and Blood Transfusion of the FMBA of Russia, 72
RL Krasnoarmeyskaya street, Kirov 610027, Russia
XX
DR MD5; 556e700c41a434ee49fab74808daea1b.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: PARallele HLA Software v. 1.11.0
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..5749
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <1..>5261
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06"
FT /note="null allele"
FT mRNA join(<1..109,1541..1810,4360..4641,5151..>5261)
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06"
FT /product="MHC class II antigen"
FT CDS join(1..109,1541..1810,4360..4641,5151..>5261)
FT /codon_start=1
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*06"
FT /product="MHC class II antigen"
FT /protein_id="WCB70283.1"
FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVYQFKG
FT MCYFTNGTERVRLVTRHIYNREEYARFDSDVGVYRAVTPQGRPVAEYWNSQKEVLERTR
FT AELDTVCRHNYEVGYRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVQW
FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA
FT QSESAQSKMLSGVGGFVLGLIFLGLGLIICQRSQK"
XX
SQ Sequence 5749 BP; 1471 A; 1286 C; 1417 G; 1575 T; 0 other;
atgtcttgga agaaggcttt gcggatcccc ggagaccttc gggtagcaac tgtcaccttg 60
atgctggcga tgctgagctc cctactggct gagggcagag actctcccgg taagtgcagg 120
gcagctgctc tccagagccg ccactctggg aacaggctct ccttgggctg gggtatgggg 180
gatggtgatc tctatgatct tggacacaat ctttcatcaa catttcctct ctcttgggaa 240
agaaagctat gttgcattcc catttatctt ttagtgatga gatgaggaca atccaatccc 300
catcctacag gcttaagcct ggaagaggag gagagaggag agaaagagga gataaagtgt 360
acatttacta ccagcgatag gacaaagtga gcatggggtt atttttgaag atatgaattt 420
ctccaaagac acagcaggat ttgtcattta ggcgtgcccc aagactgcct ggacttagga 480
ttatgagatc ctgcattgga aaatgtgagg cagcaatggt gtctgtagtt tctgtatttg 540
aggaaaattt gtctctattc ctgaccgagt ggagcatttg tggaggcaaa atcttggtgc 600
tgagggaagc tgactggctg accacagaga gggagtcttc gggtttcact gatttatggg 660
caaatggtga cttgagtggg attcagagac ccgagttaat ggtggactga atttagtagg 720
aaggaggatg taaagaaggg aaataacaca tattgtgaaa ccactcactt cagacagaac 780
aatactttat ataacttctc tctcactcct tctaacatcc tgtgtgtaga tatcatgatt 840
ttcttttaca caattatact tgtgatatgg atattctgtt acataacctg cccaaactgg 900
tgactgccac agtttaattg gaatctagtt tatcaaattc aaaagcttgt gctctttcca 960
tgaataaatg tctctatcta ggactcagag gtgtaggtcc tttccaacat agaagggagt 1020
gaacctcaac gggacttggg agggtaaatc taggcatggg aaggaaggta ttttacccag 1080
ggaccaagag aatacgcgtg tcagaacgag gccaggctta attcctggac ctatctcgtc 1140
attccgttga actctcagat ttatgtggat aactttatct ctgaggtatc caggagcttc 1200
atgaaaaatg ggatttcatg cgagaacgcc ctgatccctc taagtgcaga ggtgcatgta 1260
aaatcagccc gactgcctct tcgctgggtt cacaggctca ggcagggaca gggctttcct 1320
ccctttcctg gatgtaggaa ggcagattcc agaagcccgc aaagaaggcg ggcagagctg 1380
ggcagagccg ccgggaggat cccaggtctg gagcgccagg cacgggcggg cgggaactgg 1440
aggtcgcgcg ggcggttcca cagctccagg ccgggtcagg gcggcggctg cgggggcggc 1500
cgggctgggg cctgactgac cggccggtga ttccccgcag aggatttcgt gtaccagttt 1560
aagggcatgt gctacttcac caacgggacg gagcgcgtgc gtcttgtaac cagacacatc 1620
tataaccgag aggagtacgc gcgcttcgac agcgacgtgg gggtgtaccg ggcggtgacg 1680
ccgcaggggc ggcctgttgc cgagtactgg aacagccaga aggaagtcct ggagaggacc 1740
cgggcggagt tggacacggt gtgcagacac aactacgagg tggggtaccg cgggatcctg 1800
cagaggagag gtgagcgtcg tcgcccctcc gtgaggcgca cccttggccg ggaccccgag 1860
tctctgtgcc gggaggggcg atgggggcga ggtctctgaa atctgagccc agttcattcc 1920
accccagggg aaaggaggcg gcggcggggt ggtgggggca ggtgcatcgg aggggcgggg 1980
acctagggca gagcaggggg acaagcagag ttggccaggc tgcctagtgt cccccccagc 2040
ctccccgtcc gtcggcctcg tcctctgctc tgcacgtttc tcgcctcgtg ccttatgcgt 2100
ttgcctcctc gtgccttacc ttcgctaagc agttctctct gcccccagtg cccaccctct 2160
tcccctgccc gccggcctcg ctagcactgc cccacccagc aaggcccacg tgcgcagctt 2220
gcgccgcagg aagcttcagg cttggcctgg tggagttagg gctgccccac aactgcgcgc 2280
agggcatcca gcaattacag ttgcaaaata agatattttg actttttggc ttcaaatcat 2340
tattcatcgt aattctgttt tcttaaatgg ctaccactaa tggcggagat ctttgaggcg 2400
agagactgtt taattattgc atgcctggta cctgacacat tgactggtat gtggtgtgag 2460
ctcaatgatc ttctgttaaa ttcatgaata aatgtactca gctgccaatc cagttaggtt 2520
caagaaaaaa acagaggctt acaaatgaac tttatcaatt attttctatc attttgctta 2580
atgctttcaa gtaaactctt actgacttgg atcttaatag aatttgtgaa tacaaagtct 2640
gaggaaaatg tgtttgctaa aaataaaaac aatgcttgaa tgatgttgta aggcagagtt 2700
ttaatttctt agaaaagctg aacaaatagc actatgcaaa gatcagaagt ttgggaataa 2760
ataggttgaa gctattaaat tattggataa aaatagtttc aggttgcttt tggcctaggt 2820
tatcccctcc tcccatcact atccacttca ggaataaaca ttctgaaagt caattttacc 2880
cattcaggaa gcacttattt ctagacagtt gccttatcaa ataccatcta tattatgtca 2940
tttaatctcg cagctacctg tgcattagag attagcatca ccactttata tatcctaata 3000
ttggtacatg ataaacactt taagtaatca gcccacaatt actcaccaag atcttaagcc 3060
tcccaaagta cacaacattc ttatgttcct cactacacat ctgtagagtc taagggatgt 3120
aaggccttgt taaagccagt tttgaccaga agcagcaatg agtctattcc tgtttgttct 3180
ccatgttaat gcggcattga aaattcatga ttaatcaatc cctagtctga ccccagtgtt 3240
atctatgcag gttcacaaaa cttttagttt gctttacact cccttgcctt cttttgactc 3300
acatcctaat gccagcaagt acttatattt ttgctatttc agttttattt ccatgaaatt 3360
tattttatca tcttttctca taaatttgtg ccctctattt ttactcccag tctgttgaag 3420
atgaacaaat cttataaggc cacatagctg actctgattt cagttggcct ccaggaagga 3480
gaacctaaag aaaagttcaa gtccaagcag aaaccatgat tccttccgga tgatggctca 3540
agagtgccat ttaattgggg tgccacctgc tgacctcagc aaatcccagt tatatgtata 3600
tgttcacatt acaggctcat tagcccaggc cgacctctgc acggatctca gaatattttc 3660
tgtggagaac atacacgata atgtctgatt tcagaacaag aaagtaattg tcaatagcaa 3720
ggaaatggag tagggtagac agctagtaat taaactcact tgtgcgttaa aaagaaatta 3780
aggaaaaaaa gaaaatgaga gaacatatta ctaaataaag aaagcacaca ttaaatattt 3840
gctatagttt cacactaaga gaataaagga aatgtgataa agtggcctaa aaggtaaagg 3900
atgagatgtg taaaagaggc ggggaaagat gtgtcatttt ttttactatg agcagcaatc 3960
tgagaagata aaggaattga gttgtggaca aacatgatgt ttgatcaagg gttatttgtt 4020
ttgaaggcct gcctactttt ttttcaaata ttacaaactt ttgaaataac attctacttt 4080
tttttcaaat attacaaact tttgaaataa cattcttttt gttttttgct gtctgttact 4140
agattgcaca ttctataaat gcagggacca tggtatgtta tttatctttg aattctcagt 4200
gattgtcaaa tttatatttg ttgaatgaac cttaatccaa gacttggact ccaggtatct 4260
ttccactctg gtccaaggag ggatccttcc tcatggtaga cgtggtgtgt gttctcacat 4320
ctcactccta tgtcttttcc tgtctgttac tgccctcagt ggagcccaca gtgaccatct 4380
ccccatccag gacagaggcc ctcaaccacc acaacctgct ggtctgctcg gtgacagatt 4440
tctatccagg ccagatcaaa gtccagtggt ttcggaatga tcaggaggag acagccggcg 4500
ttgtgtccac cccccttatt aggaatggtg actggacttt ccagatcctg gtgatgctgg 4560
aaatgactcc ccagcgtgga gatgtctaca cctgccacgt ggagcacccc agcctccaga 4620
gccccatcac cgtggagtgg cgtaagggga tattgagttt ctgttactat gggcccacaa 4680
gacaaagagc tccttctgac ccattccttc ccatctctta tccctgatgt cactactgag 4740
ctgggaatca caggagacta gagcacctct tgctccatgg caagtgcatc agaagaatcc 4800
tggtctcatc acctttccag atgctaggga aattactctg catactgttg ctctgaatcc 4860
cagtcctgat agctctgagg gactgattct tagggctggt gactgggatc ttagggtcta 4920
aggttatgga tgagttcttg aagagcagag atttgcttcc ccactctctc acctattcac 4980
tgtatccaag gacctattgg ctggtctttc ccctccttag gggtggtctg aatggagaac 5040
tagtttcctt tgatgccttc accttctgca cctcagactg gacttcaact cctcagcagg 5100
gatgctatgg ggtgtgggga caaacacaga cactcagttc tgctctttag gggctcagtc 5160
tgaatctgcc cagagcaaga tgctgagtgg cgttggaggc ttcgtgctgg ggctgatctt 5220
ccttgggctg ggccttatca tctgtcaaag gagtcagaaa ggtgaggaac cccaggggaa 5280
aaggggaaga tgggctgtga cccagaccct ctgttcagag tggtcctgtc tgtagattag 5340
ctctttcctc ctcaccctga gaggaagtgc gaggagacag gacaagatgg gaggaggcat 5400
tggaatctga ttttactggt tgaaaggtag cgctgtcaca gagctgactg atagagctta 5460
ttccagggca tccttaccat tcatcattgt ctcactggct cctttccaaa agcttcctcc 5520
attaagaggg tcagagcctc aacttccttt ctttctagtg acaatttcct ttgttttagg 5580
ggattttaaa ttagggtgct gaaggcctgg aagaacatgg gtgggaagag aatgtaactc 5640
taagtcatgt gtgtcatttt cctttggggt gagagagtgg ctgtttgtgt aatgagacct 5700
ttctctgcat aacttccttt tgtaagacct caagggcctc caccagcag 5749
//