Dbfetch
ID OQ087130; SV 1; linear; genomic DNA; STD; HUM; 5749 BP. XX AC OQ087130; XX DT 14-JUN-2023 (Rel. 144, Created) DT 15-JUN-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQB1) gene, HLA-DQB1*06 allele, DE partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5749 RA Loginova M., Paramonov I.; RT ; RL Submitted (16-DEC-2022) to the INSDC. RL Research Laboratory of Applied Immunogenetics, Kirov Scientific Research RL Institute of Hematology and Blood Transfusion of the FMBA of Russia, 72 RL Krasnoarmeyskaya street, Kirov 610027, Russia XX DR MD5; 556e700c41a434ee49fab74808daea1b. XX CC ##Assembly-Data-START## CC Assembly Method :: PARallele HLA Software v. 1.11.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5749 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>5261 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06" FT /note="null allele" FT mRNA join(<1..109,1541..1810,4360..4641,5151..>5261) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06" FT /product="MHC class II antigen" FT CDS join(1..109,1541..1810,4360..4641,5151..>5261) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06" FT /product="MHC class II antigen" FT /protein_id="WCB70283.1" FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVYQFKG FT MCYFTNGTERVRLVTRHIYNREEYARFDSDVGVYRAVTPQGRPVAEYWNSQKEVLERTR FT AELDTVCRHNYEVGYRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVQW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIICQRSQK" XX SQ Sequence 5749 BP; 1471 A; 1286 C; 1417 G; 1575 T; 0 other; atgtcttgga agaaggcttt gcggatcccc ggagaccttc gggtagcaac tgtcaccttg 60 atgctggcga tgctgagctc cctactggct gagggcagag actctcccgg taagtgcagg 120 gcagctgctc tccagagccg ccactctggg aacaggctct ccttgggctg gggtatgggg 180 gatggtgatc tctatgatct tggacacaat ctttcatcaa catttcctct ctcttgggaa 240 agaaagctat gttgcattcc catttatctt ttagtgatga gatgaggaca atccaatccc 300 catcctacag gcttaagcct ggaagaggag gagagaggag agaaagagga gataaagtgt 360 acatttacta ccagcgatag gacaaagtga gcatggggtt atttttgaag atatgaattt 420 ctccaaagac acagcaggat ttgtcattta ggcgtgcccc aagactgcct ggacttagga 480 ttatgagatc ctgcattgga aaatgtgagg cagcaatggt gtctgtagtt tctgtatttg 540 aggaaaattt gtctctattc ctgaccgagt ggagcatttg tggaggcaaa atcttggtgc 600 tgagggaagc tgactggctg accacagaga gggagtcttc gggtttcact gatttatggg 660 caaatggtga cttgagtggg attcagagac ccgagttaat ggtggactga atttagtagg 720 aaggaggatg taaagaaggg aaataacaca tattgtgaaa ccactcactt cagacagaac 780 aatactttat ataacttctc tctcactcct tctaacatcc tgtgtgtaga tatcatgatt 840 ttcttttaca caattatact tgtgatatgg atattctgtt acataacctg cccaaactgg 900 tgactgccac agtttaattg gaatctagtt tatcaaattc aaaagcttgt gctctttcca 960 tgaataaatg tctctatcta ggactcagag gtgtaggtcc tttccaacat agaagggagt 1020 gaacctcaac gggacttggg agggtaaatc taggcatggg aaggaaggta ttttacccag 1080 ggaccaagag aatacgcgtg tcagaacgag gccaggctta attcctggac ctatctcgtc 1140 attccgttga actctcagat ttatgtggat aactttatct ctgaggtatc caggagcttc 1200 atgaaaaatg ggatttcatg cgagaacgcc ctgatccctc taagtgcaga ggtgcatgta 1260 aaatcagccc gactgcctct tcgctgggtt cacaggctca ggcagggaca gggctttcct 1320 ccctttcctg gatgtaggaa ggcagattcc agaagcccgc aaagaaggcg ggcagagctg 1380 ggcagagccg ccgggaggat cccaggtctg gagcgccagg cacgggcggg cgggaactgg 1440 aggtcgcgcg ggcggttcca cagctccagg ccgggtcagg gcggcggctg cgggggcggc 1500 cgggctgggg cctgactgac cggccggtga ttccccgcag aggatttcgt gtaccagttt 1560 aagggcatgt gctacttcac caacgggacg gagcgcgtgc gtcttgtaac cagacacatc 1620 tataaccgag aggagtacgc gcgcttcgac agcgacgtgg gggtgtaccg ggcggtgacg 1680 ccgcaggggc ggcctgttgc cgagtactgg aacagccaga aggaagtcct ggagaggacc 1740 cgggcggagt tggacacggt gtgcagacac aactacgagg tggggtaccg cgggatcctg 1800 cagaggagag gtgagcgtcg tcgcccctcc gtgaggcgca cccttggccg ggaccccgag 1860 tctctgtgcc gggaggggcg atgggggcga ggtctctgaa atctgagccc agttcattcc 1920 accccagggg aaaggaggcg gcggcggggt ggtgggggca ggtgcatcgg aggggcgggg 1980 acctagggca gagcaggggg acaagcagag ttggccaggc tgcctagtgt cccccccagc 2040 ctccccgtcc gtcggcctcg tcctctgctc tgcacgtttc tcgcctcgtg ccttatgcgt 2100 ttgcctcctc gtgccttacc ttcgctaagc agttctctct gcccccagtg cccaccctct 2160 tcccctgccc gccggcctcg ctagcactgc cccacccagc aaggcccacg tgcgcagctt 2220 gcgccgcagg aagcttcagg cttggcctgg tggagttagg gctgccccac aactgcgcgc 2280 agggcatcca gcaattacag ttgcaaaata agatattttg actttttggc ttcaaatcat 2340 tattcatcgt aattctgttt tcttaaatgg ctaccactaa tggcggagat ctttgaggcg 2400 agagactgtt taattattgc atgcctggta cctgacacat tgactggtat gtggtgtgag 2460 ctcaatgatc ttctgttaaa ttcatgaata aatgtactca gctgccaatc cagttaggtt 2520 caagaaaaaa acagaggctt acaaatgaac tttatcaatt attttctatc attttgctta 2580 atgctttcaa gtaaactctt actgacttgg atcttaatag aatttgtgaa tacaaagtct 2640 gaggaaaatg tgtttgctaa aaataaaaac aatgcttgaa tgatgttgta aggcagagtt 2700 ttaatttctt agaaaagctg aacaaatagc actatgcaaa gatcagaagt ttgggaataa 2760 ataggttgaa gctattaaat tattggataa aaatagtttc aggttgcttt tggcctaggt 2820 tatcccctcc tcccatcact atccacttca ggaataaaca ttctgaaagt caattttacc 2880 cattcaggaa gcacttattt ctagacagtt gccttatcaa ataccatcta tattatgtca 2940 tttaatctcg cagctacctg tgcattagag attagcatca ccactttata tatcctaata 3000 ttggtacatg ataaacactt taagtaatca gcccacaatt actcaccaag atcttaagcc 3060 tcccaaagta cacaacattc ttatgttcct cactacacat ctgtagagtc taagggatgt 3120 aaggccttgt taaagccagt tttgaccaga agcagcaatg agtctattcc tgtttgttct 3180 ccatgttaat gcggcattga aaattcatga ttaatcaatc cctagtctga ccccagtgtt 3240 atctatgcag gttcacaaaa cttttagttt gctttacact cccttgcctt cttttgactc 3300 acatcctaat gccagcaagt acttatattt ttgctatttc agttttattt ccatgaaatt 3360 tattttatca tcttttctca taaatttgtg ccctctattt ttactcccag tctgttgaag 3420 atgaacaaat cttataaggc cacatagctg actctgattt cagttggcct ccaggaagga 3480 gaacctaaag aaaagttcaa gtccaagcag aaaccatgat tccttccgga tgatggctca 3540 agagtgccat ttaattgggg tgccacctgc tgacctcagc aaatcccagt tatatgtata 3600 tgttcacatt acaggctcat tagcccaggc cgacctctgc acggatctca gaatattttc 3660 tgtggagaac atacacgata atgtctgatt tcagaacaag aaagtaattg tcaatagcaa 3720 ggaaatggag tagggtagac agctagtaat taaactcact tgtgcgttaa aaagaaatta 3780 aggaaaaaaa gaaaatgaga gaacatatta ctaaataaag aaagcacaca ttaaatattt 3840 gctatagttt cacactaaga gaataaagga aatgtgataa agtggcctaa aaggtaaagg 3900 atgagatgtg taaaagaggc ggggaaagat gtgtcatttt ttttactatg agcagcaatc 3960 tgagaagata aaggaattga gttgtggaca aacatgatgt ttgatcaagg gttatttgtt 4020 ttgaaggcct gcctactttt ttttcaaata ttacaaactt ttgaaataac attctacttt 4080 tttttcaaat attacaaact tttgaaataa cattcttttt gttttttgct gtctgttact 4140 agattgcaca ttctataaat gcagggacca tggtatgtta tttatctttg aattctcagt 4200 gattgtcaaa tttatatttg ttgaatgaac cttaatccaa gacttggact ccaggtatct 4260 ttccactctg gtccaaggag ggatccttcc tcatggtaga cgtggtgtgt gttctcacat 4320 ctcactccta tgtcttttcc tgtctgttac tgccctcagt ggagcccaca gtgaccatct 4380 ccccatccag gacagaggcc ctcaaccacc acaacctgct ggtctgctcg gtgacagatt 4440 tctatccagg ccagatcaaa gtccagtggt ttcggaatga tcaggaggag acagccggcg 4500 ttgtgtccac cccccttatt aggaatggtg actggacttt ccagatcctg gtgatgctgg 4560 aaatgactcc ccagcgtgga gatgtctaca cctgccacgt ggagcacccc agcctccaga 4620 gccccatcac cgtggagtgg cgtaagggga tattgagttt ctgttactat gggcccacaa 4680 gacaaagagc tccttctgac ccattccttc ccatctctta tccctgatgt cactactgag 4740 ctgggaatca caggagacta gagcacctct tgctccatgg caagtgcatc agaagaatcc 4800 tggtctcatc acctttccag atgctaggga aattactctg catactgttg ctctgaatcc 4860 cagtcctgat agctctgagg gactgattct tagggctggt gactgggatc ttagggtcta 4920 aggttatgga tgagttcttg aagagcagag atttgcttcc ccactctctc acctattcac 4980 tgtatccaag gacctattgg ctggtctttc ccctccttag gggtggtctg aatggagaac 5040 tagtttcctt tgatgccttc accttctgca cctcagactg gacttcaact cctcagcagg 5100 gatgctatgg ggtgtgggga caaacacaga cactcagttc tgctctttag gggctcagtc 5160 tgaatctgcc cagagcaaga tgctgagtgg cgttggaggc ttcgtgctgg ggctgatctt 5220 ccttgggctg ggccttatca tctgtcaaag gagtcagaaa ggtgaggaac cccaggggaa 5280 aaggggaaga tgggctgtga cccagaccct ctgttcagag tggtcctgtc tgtagattag 5340 ctctttcctc ctcaccctga gaggaagtgc gaggagacag gacaagatgg gaggaggcat 5400 tggaatctga ttttactggt tgaaaggtag cgctgtcaca gagctgactg atagagctta 5460 ttccagggca tccttaccat tcatcattgt ctcactggct cctttccaaa agcttcctcc 5520 attaagaggg tcagagcctc aacttccttt ctttctagtg acaatttcct ttgttttagg 5580 ggattttaaa ttagggtgct gaaggcctgg aagaacatgg gtgggaagag aatgtaactc 5640 taagtcatgt gtgtcatttt cctttggggt gagagagtgg ctgtttgtgt aatgagacct 5700 ttctctgcat aacttccttt tgtaagacct caagggcctc caccagcag 5749 //