Dbfetch
ID OP620420; SV 1; linear; genomic DNA; STD; HUM; 4962 BP. XX AC OP620420; XX DT 11-DEC-2022 (Rel. 144, Created) DT 12-DEC-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens isolate 5996612-263762 MHC class II antigen (HLA-DQB1) gene, DE HLA-DQB1*03NEW allele, exons 2 through 5 and partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4962 RA Deghaide N.H.S., Martins G.V., Santos V.T., Donadi E.A.; RT ; RL Submitted (11-OCT-2022) to the INSDC. RL Laboratorio de HLA, Hemocentro de Ribeirao Preto, Rua: Tenente Catao Roxo, RL Ribeirao Preto, SP 14051-140, Brazil XX DR MD5; af2b90f72e21bb4b1e3a98bc7e3910e1. XX CC ##Assembly-Data-START## CC Assembly Method :: TypeStream Visual v. 3.0 CC Assembly Name :: HLA-DQB1*03:New CC Coverage :: Full Gene CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4962 FT /organism="Homo sapiens" FT /isolate="5996612-263762" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..4962 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW" FT intron <1..99 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW" FT /number=1 FT mRNA join(<100..369,2900..3181,3697..3807,4924..4962) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW" FT /product="MHC class II antigen" FT CDS join(<100..369,2900..3181,3697..3807,4924..4937) FT /codon_start=3 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW" FT /product="MHC class II antigen" FT /protein_id="WAH70836.1" FT /translation="DFVYQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAV FT TPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEAL FT NHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRG FT DVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGL FT LH" FT exon 100..369 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW" FT /number=2 FT intron 370..2899 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW" FT /number=2 FT exon 2900..3181 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW" FT /number=3 FT intron 3182..3696 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW" FT /number=3 FT exon 3697..3807 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW" FT /number=4 FT intron 3808..4923 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW" FT /number=4 FT exon 4924..4962 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW" FT /number=5 FT 3'UTR 4938..4962 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW" XX SQ Sequence 4962 BP; 1258 A; 1137 C; 1183 G; 1379 T; 5 other; cggttcnnnn nctccgggcc gggtcagggc ggcggctgcg ggggcggccg ggctggggcc 60 gggccggggc ctgactgacc ggccggtgat tccccgcaga ggatttcgtg taccagttta 120 agggcatgtg ctacttcacc aacgggacgg agcgcgtgcg tcttgtgacc agatacatct 180 ataaccgaga ggagtacgca cgcttcgaca gcgacgtggg ggtgtatcgg gcggtgacgc 240 cgctggggcc gcctgccgcc gagtactgga acagccagaa ggaagtcctg gagaggaccc 300 gggcggagtt ggacacggtg tgcagacaca actaccagtt ggagctccgc acgaccttgc 360 agcggcgagg tgagcgtcgt cgcccgtctg cgaggcccat ccttggcagg ggcccagagt 420 ctctgcgcca ggaggggcga agggggcgcg gcctctggaa cctgagcctt gttcgttcca 480 ccccggctga caggaggagg cggtgggggt gctgggggct ggtgcatcgg aggggcaggg 540 acctagggca gagcaggggg acaggcagag ttggtcaagc tgcctagttt cgccccatcc 600 tccccgtccg tcggcctcgc cctctgctct gcacgttctt gcctcgtgcc ttatgcgttt 660 gcctcctcgt gccttacctt tactaagcag ttctctctgc ccccaatttc cgccctcttc 720 ccctgcccgc ccgcccggct agcactgccg cacccggcaa ggtccaccta cacagctcat 780 gcagtgggaa gcttcagact tggcctgatg gagttagggc tgccccacaa ctgcgcgcag 840 ggcatccagc aattacagtt gtcaaataag atattttgac ttttgacttc aaattattat 900 tcatcgtaat tctgttttct taaatggctc tcattcatgg cggagctctt tgagatgaga 960 gtgttttaat cattgcatgc ctggtatctg acacattgac tggcatgtgg tatgagctca 1020 atgatcttct gttaaattaa tgaataaatg tgctcagctg ccaatccact taggctcaag 1080 ggaaagcaga ggataaatag agccttaaaa atggactttt attaattatt ttctgtcatt 1140 ttgcttaatt ctttaaagta aactcttatt gacttggatc ttaatagagt ttgtgaatac 1200 aaagtctgag gaaaaaagtg tttgctaaaa ataaaaacaa cacttgaatg atgtttgtaa 1260 ggcagtttta atttcttaga aaagctgaac aaatggcaca atgcaaagag cagaagtttt 1320 ggaataaata gattgaagca attaaattat tggataaaaa tagtttcagg ttgcttttgg 1380 cttaggttct cccctccccc catcactatc cacttcagga ataaacattc tgaaagtcaa 1440 ttttacccat ttagtgagca cttatttcta gacagttacc ttatcaaata ccgtctatgt 1500 tacgtcattt aatctcacag ttgcctgtgc attagagatt agcatcacca ctttatatat 1560 cctaatatta gtacatgaca aacactttaa gtaatcagcc cacaagtact caccaagacc 1620 ttaagcctcc caaagtacac aatattcttt atgttcttca ctacacatct atagagtcaa 1680 agggacataa agccttgtta aagccagttt tgactagaag cagcaatgag tctcttcctg 1740 tttgatctcc atgttaatgg gacaaaatga tactttcaag gcattgaaaa tttatgatta 1800 atcaatccct agtctgactc cagtgttacc tatgcagatt cacaaaactt ttagtttact 1860 ttaaactccc ttgccttctt ttgactcaca tcgtagtgcc agcaagtact tacatttttg 1920 ctattttggt tctatttcca taaaatttat tttatcatct tttctcataa gtttgtgccc 1980 tctattttac tcccagtctg tgtaagatga acaaatctta taaggccaca tagctgactg 2040 tgatttcagg tggactccag gaaggagaac caaagaaaag ttcaagtcca agcagaaacc 2100 gtgattcctt ccggatgatg gctcaagagt gccttttaat tggggtgcaa cctgctgacc 2160 tcagcaaatc tcagctatat ttatatgttc acattacagg ctcattaacc taggctgatc 2220 tctgcaagga tctcagaata ttttctacag ataacataca tgataatatc tgatttcagg 2280 acaaaaaagt aattctcaat agcaagggaa tggagtaggg tagacagcta gtaattaaac 2340 tcacttgtat gttaaaaata aattaaggaa aaaaagaaaa tgagagaaca tattactaaa 2400 taaagaaagc atacattaaa tatttactat agtttcacac taagagaata aaggaaatgc 2460 aataaagtgg cctgaaagat aaaggatgag acgtgtaaag agacagggaa agatgtgtca 2520 tttttttact atgagcagca gtctgagaag ataaaggaat cgagttatgg gcaaacatga 2580 tgtttgatca gtgttatttg ttttgaaggc ctgcctactt ttgtttcaaa tattacagac 2640 ttttgaaatc acattctttt tgttttttgc tgtctgttac tagatcgcac attctgtaaa 2700 ggcagggacc atggtatgtt gtttatcttt ggattctcag tgattgtcat atttatattt 2760 gttgaatgaa tcttaatcca agacttggac tccaggtatc tttccactct ggttccaagg 2820 agggaccatt cccaatggta gacgtgctgt gtggtctcac atctcactcc tgtcttttcc 2880 tgtctgttac tgccctcagt ggagcccaca gtgaccatct ccccatccag gacagaggcc 2940 ctcaaccacc acaacctgct tgtctgctca gtgacagatt tctatccagc ccagatcaaa 3000 gtccggtggt ttcggaatga ccaggaggag acaactggcg ttgtgtccac cccccttatt 3060 aggaacggtg actggacctt ccagatcctg gtgatgctgg aaatgactcc ccagcgtgga 3120 gacgtctaca cctgccacgt ggagcacccc agcctccaga accccatcat cgtggagtgg 3180 cgtaagggga tattgagttt ctgttactat gggccccaca agacaaaggg cagagctcct 3240 tctgacccat tccttcccat ctcttatccc tgatgtcact actgagctgg ggatcacagg 3300 agactagagc acctcttgct ccatggcaag tgcatcagaa gaatcctgat ctcatcacct 3360 ttccagatgc tagggaaatt attctacgta ctgtttctcc agatcccagt cctgatagct 3420 cggagggact tattattagg gctggtgact gggatcttag ggtttaaggt atggatgagt 3480 tcctgaggag tggagatctg cttccccgct ctctcaccta ctcactatac cgaaggacct 3540 attggctggc tttcccctcc cttaggggtg gtctgaatgg aggactaggt tcctttgaca 3600 ctttcacctc ctgcatctca gactggactt cagctcctca gcagggatgc tatggggtgt 3660 agggacaaac gctgacactc aggctctgct tcttaggggc tcagtctgaa tctgcccaga 3720 gcaagatgct gagtggcatt ggaggcttcg tgctggggct gatcttcctc gggctgggcc 3780 ttattatcca tcacaggagt cagaaaggtg aggaacccca agggaaaagg ggaagatggg 3840 ctgtgaccca gaccctctgt tcagggaggt cctgtctcta gatgtggctc tttcctcctg 3900 accctgagag gaagaaaact gagctggagg tgggaggaga caggacaaga ttggaggagg 3960 cattggaatc tgattttact agttgaaagg tagccctgtc acacaggtga ctgatagagc 4020 ttattccagg atatacttac cattcatcat ctcattggct cctttccaaa agcttcctcc 4080 attaagaggg tcagagcctt ggcctccttg ccttctagtg acaattttct ttgttttagg 4140 ggattttaaa ttagggtact taaggccttg aagaacatga gtggtaagag aatataactc 4200 taattaagtc acatgtgtca ttttcctttg gggtgaaaga gtggctgttt gtgtaatgag 4260 acctttctct gcataacttc cttttgtaag acctcaaggg cctccaccag caggtgatat 4320 ttcagccatg agccagtgtg ggggggcaca ggtgtaagag ggaagagcat gagctgaatg 4380 cacctgacca caatggtctc tgttcatggt atatttgctg ctatgaggat caagacttag 4440 ggtcgaagtt tgccagtttc taggaatctc cagaggttgt tccccagaac caagccttaa 4500 ctttggtggt atcttcttgt gaaatgtgaa gccagaacca cagcttaaat gttagacaag 4560 aggatgatgc ccactttgtg ccacatgttg gtggctactg cctgtaggca ttttccagtg 4620 actgaaagag gctgctagtg gtagggatga ggtatcatcc aattttctaa aaagattgaa 4680 cccttcatat tccccagaag agtaacagct gttccgccac ttcccacata tctgcatcaa 4740 gctgaagttc tgtgtcctca cgagctgatt tcacctttgc acagatcttg cgggaggtga 4800 caataataca ttctggacct cagctttctc tgtctgaagc tgcagggggc ccctgagggg 4860 tgggggagat tgcaggccca ccagcgtacc ctgtgctgat catccctctt ctctcttctt 4920 cagggctcct gcactgactc ctgagactat tttaactggg at 4962 //