Dbfetch
ID OP352847; SV 1; linear; genomic DNA; STD; HUM; 3158 BP. XX AC OP352847; XX DT 14-JUN-2023 (Rel. 144, Created) DT 15-JUN-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens isolate VGH004 MHC class I antigen (HLA-A) gene, DE HLA-A*03:05:01 allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3158 RA Tran J., Sherwood K., McKenzie B., Dunlop E., Chow C., Yeung T., Truong D., RA Kojic E., Beckrud J., Phoon C., Wong J., Alrajhi I., Lan J., Keown P.; RT ; RL Submitted (31-AUG-2022) to the INSDC. RL Immunology, University of British Columbia, 858 West 10th Avenue, RL Vancouver, BC V5Z1M9, Canada XX DR MD5; 12dc2478bafe675879078a2935f7c36f. XX CC ##Assembly-Data-START## CC Assembly Method :: Omixon HLA Twin RUO v. 4.6.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3158 FT /organism="Homo sapiens" FT /isolate="VGH004" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <79..>2980 FT /gene="HLA-A" FT /allele="HLA-A*03:05:01" FT mRNA join(<79..151,282..551,793..1068,1647..1922,2025..2141, FT 2584..2616,2759..2806,2976..>2980) FT /gene="HLA-A" FT /allele="HLA-A*03:05:01" FT /product="MHC class I antigen" FT CDS join(79..151,282..551,793..1068,1647..1922,2025..2141, FT 2584..2616,2759..2806,2976..2980) FT /codon_start=1 FT /gene="HLA-A" FT /allele="HLA-A*03:05:01" FT /product="MHC class I antigen" FT /protein_id="WGL47644.1" FT /translation="MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGT FT LRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMA FT AQITQRKWEAAHEAEQLRAYLEGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRK FT GGSYTQAASSDSAQGSDVSLTACKV" XX SQ Sequence 3158 BP; 605 A; 908 C; 979 G; 666 T; 0 other; ccaatcagtg tcgtcgcggt cgctgttcta aagcccgcac gcacccaccg ggactcagat 60 tctccccaga cgccgaggat ggccgtcatg gcgccccgaa ccctcctcct gctactctcg 120 ggggccctgg ccctgaccca gacctgggcg ggtgagtgcg gggtcgggag ggaaaccgcc 180 tctgcgggga gaagcaaggg gccctcctgg cgggggcgca ggaccggggg agccgcgccg 240 ggacgagggt cgggcaggtc tcagccactg ctcgccccca ggctcccact ccatgaggta 300 tttcttcaca tccgtgtccc ggcccggccg cggggagccc cgcttcatcg ccgtgggcta 360 cgtggacgac acgcagttcg tgcggttcga cagcgacgcc gcgagccaga ggatggagcc 420 gcgggcgccg tggatagagc aggaggggcc ggagtattgg gaccaggaga cacggaatgt 480 gaaggcccag tcacagactg accgagtgga cctggggacc ctgcgcggct actacaacca 540 gagcgaggcc ggtgagtgac cccggccggg ggcgcaggtc aggacccctc atcccccacg 600 gacgggccag gtcgcccaca gtctccgggt ccgagatcca ccccgaagcc gcgggacccc 660 gagacccttg ccccgggaga ggcccaggcg cctttacccg gtttcatttt cagtttaggc 720 caaaaatccc cccgggttgg tcggggctgg gcggggctcg ggggactggg ctgaccgcgg 780 ggtcggggcc aggttctcac accatccaga taatgtatgg ctgcgacgtg gggtcggacg 840 ggcgcttcct ccgcgggtac cggcaggacg cctacgacgg caaggattac atcgccctga 900 acgaggacct gcgctcttgg accgcggcgg acatggcggc tcagatcacc cagcgcaagt 960 gggaggcggc ccatgaggcg gagcagttga gagcctacct ggagggcacg tgcgtggagt 1020 ggctccgcag atacctggag aacgggaagg agacgctgca gcgcacgggt accaggggcc 1080 acggggcgcc tccctgatcg cctgtagatc tcccgggctg gcctcccaca aggaggggag 1140 acaattggga ccaacactag aatatcaccc tccctctggt cctgagggag aggaatcctc 1200 ctgggttcca gatcctgtac cagagagtga ctctgaggtt ccgccctgct ctctgacaca 1260 attaagggat aaaatctctg aaggagtgac gggaagacga tccctcgaat actgatgagt 1320 ggttcccttt gacaccggca gcagccttgg gcccgtgact tttcctctca ggccttgttc 1380 tctgcttcac actcaatgtg tgtgggggtc tgagtccagc acttctgagt ccctcagcct 1440 ccactcaggt caggaccaga agtcgctgtt cccttctcag ggaatagaag attatcccag 1500 gtgcctgtgt ccaggctggt gtctgggttc tgtgctctct tccccatccc gggtgtcctg 1560 tccattctca agatggccac atgcgtgctg gtggagtgtc ccatgacaga tgcaaaatgc 1620 ctgaattttc tgactcttcc cgtcagaccc ccccaagaca catatgaccc accaccccat 1680 ctctgaccat gaggccaccc tgaggtgctg ggccctgggc ttctaccctg cggagatcac 1740 actgacctgg cagcgggatg gggaggacca gacccaggac acggagctcg tggagaccag 1800 gcctgcaggg gatggaacct tccagaagtg ggcggctgtg gtggtgcctt ctggagagga 1860 gcagagatac acctgccatg tgcagcatga gggtctgccc aagcccctca ccctgagatg 1920 gggtaaggag ggagatgggg gtgtcatgtc tcttagggaa agcaggagcc tctctggaga 1980 cctttagcag ggtcagggcc cctcaccttc ccctcttttc ccagagctgt cttcccagcc 2040 caccatcccc atcgtgggca tcattgctgg cctggttctc cttggagctg tgatcactgg 2100 agctgtggtc gctgccgtga tgtggaggag gaagagctca ggtggagaag gggtgaaggg 2160 tggggtctga gatttcttgt ctcactgagg gttccaagcc ccagctagaa atgtgccctg 2220 tctcattact gggaagcacc gtccacaatc atgggcctac ccagtctggg ccctgtgtgc 2280 cagcacttac tcttttgtaa agcacctgtt aaaatgaagg acagatttat caccttgatt 2340 acggcggtga tgggacctga tcccagcagt cacaagtcac aggggaaggt ccctgaggac 2400 agacctcagg agggctattg gtccaggacc cacacctgct ttcttcatgt ttcctgatcc 2460 cgccctgggt ctgcagtcac acatttctgg aaacttctct ggggtccaag actaggaggt 2520 tcctctagga ccttaaggcc ctggctcctt tctggtatct cacaggacat tttcttctca 2580 cagatagaaa aggagggagt tacactcagg ctgcaagtaa gtatgaagga ggctgatgcc 2640 tgaggtcctt gggatattgt gtttgggagc ccatggggga gcccacccac ctcacaattc 2700 ctcctctagc cacatcttct gtgggatctg accaggttct gtttttgttc taccccaggc 2760 agtgacagtg cccagggctc tgatgtgtcc ctcacagctt gtaaaggtga gagcttggag 2820 gacctaatgt gtgttgggtg ttgggcggaa cagtggacac agctgtgcta tggggtttct 2880 ttgcattgga tgtattgagc atgcgatggg ctgtttaagg tgtgacccct cactgtgatg 2940 gatatgaatt tgttcatgaa tatttttttc tatagtgtga gacagctgcc ttgtgtggga 3000 ctgagaggca agagttgttc ctgcccttcc ctttgtgact tgaagaaccc tgactttgtt 3060 tctgcaaagg cacctgcatg tgtctgtgtt cgtgtaggca taatgtgagg aggtggggag 3120 accaccccac ccccatgtcc accatgaccc tcttccca 3158 //