Dbfetch
ID OP270240; SV 1; linear; genomic DNA; STD; HUM; 4219 BP.
XX
AC OP270240;
XX
DT 15-JUN-2023 (Rel. 144, Created)
DT 16-JUN-2023 (Rel. 144, Last updated, Version 1)
XX
DE Homo sapiens isolate 1903609-10134686-200-2-1537699 MHC class I antigen
DE (HLA-C) gene, HLA-C*04NEW allele, complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-4219
RA Silva J.S., Goldenstein M., Vinhal F.A.;
RT ;
RL Submitted (18-AUG-2022) to the INSDC.
RL HLAGyn, Francisco H. dos Santos, 100, Aparecida de Goiania, Goainia
RL 74935900, Brazil
XX
DR MD5; 5065cfabb89116c28ad4b2dd4ce19f51.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: TypeStrean Visual and NGS Engine v. 2.1.0
CC and 2.26.1.26336
CC Assembly Name :: Default, Classical
CC Coverage :: 500x
CC Sequencing Technology :: Illumina; Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..4219
FT /organism="Homo sapiens"
FT /isolate="1903609-10134686-200-2-1537699"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene 1..4219
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT mRNA join(1..568,699..968,1215..1490,2078..2353,2475..2594,
FT 3034..3066,3174..3221,3386..4219)
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /product="MHC class I antigen"
FT exon 1..568
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=1
FT 5'UTR 1..495
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT CDS join(496..568,699..968,1215..1490,2078..2353,2475..2594,
FT 3034..3066,3174..3221,3386..3390)
FT /codon_start=1
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /product="MHC class I antigen"
FT /protein_id="WET54976.1"
FT /translation="MRVMAPRTLILLLSGALALTETWAGSHSMRYFSTSVSWPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASPRGEPREPSVEQEGPEYWDRETQKYKRQAQADRVNLRK
FT LRGYYNQSEDGSHTLQRMFGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTA
FT AQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE
FT ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPEPLTLRWKPSSQPTIPIVGIVAGLAVLAVLAVLGAMVAVVMCRRKSSGG
FT KGGSCSQAASSNSAQGSDESLIACKA"
FT intron 569..698
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=1
FT exon 699..968
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=2
FT intron 969..1214
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=2
FT exon 1215..1490
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=3
FT intron 1491..2077
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=3
FT exon 2078..2353
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=4
FT intron 2354..2474
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=4
FT exon 2475..2594
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=5
FT intron 2595..3033
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=5
FT exon 3034..3066
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=6
FT intron 3067..3173
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=6
FT exon 3174..3221
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=7
FT intron 3222..3385
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=7
FT exon 3386..4219
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
FT /number=8
FT 3'UTR 3391..4219
FT /gene="HLA-C"
FT /allele="HLA-C*04NEW"
XX
SQ Sequence 4219 BP; 815 A; 1187 C; 1275 G; 939 T; 3 other;
ttattttgct ggatgtagtt taatattacc tgaggtaagg taaggcaaag agtgggaggc 60
agggagtcca gttcagggac ggggattcca ggagaagtga aggggaaggg gctgggcgca 120
gcctgggggt ctctccctgg tttccacaga cagatccttg gccaggactc aggcacacag 180
tgtgacaaag atgcttggtg taggagaaga ggaatcagga cgaagtccca ggtcccgggc 240
ggggctctca gggtctcagg ctccaagggc cgtgtctgca ctggggaggc gccgcgttgg 300
ggattctcca ctcccctgag tttcacttct tctcccaacc tgcgtcgggt ccttcttcct 360
gaatactcat gacgcgtccc caattcccac tcccattggg tgtcgggttc tagagaagcc 420
aatcagcgtc tccgcagtcc cggttctaaa gtccccagtc acccacccgg actcagattc 480
tccccagacg ccgagatgcg ggtcatggcg ccccgaaccc tcatcctgct gctctcggga 540
gccctggccc tgaccgagac ctgggccggt gagtgcgggg ttgggaggga aacggcctct 600
ggggagagga gcgaggggcc cgcccggcga gggcgcagga cccggggagc cgcgcaggga 660
ggagggtcgg gcgggtctca gccactcctc gtccccaggc tcccactcca tgaggtattt 720
ctccacatcc gtgtcctggc ccggccgcgg ggagccccgc ttcatcgcag tgggctacgt 780
ggacgacacg cagttcgtgc ggttcgacag cgacgccgcg agtccaagag gggagccgcg 840
ggagccgtcg gtggagcagg aggggccgga gtattgggac cgggagacac agaagtacaa 900
gcgccaggca caggctgacc gagtgaacct gcggaaactg cgcggctact acaaccagag 960
cgaggacggt gagtgacccc ggcccggggc gcaggtcacg acccctcccc atcccccacg 1020
gacggcccgg gtcgccccga gtctccccgt ctgagatcca ccccgaggct gcggaacccg 1080
cccagaccct cgaccggaga gagccccagt cacctttacc cggtttcatt ttcagtttag 1140
gccaaaatcc ccgcgggttg gtcgggactg gggcggggct cgggggaccg ggctgaccac 1200
gggggcgggg ccagggtctc acaccctcca gaggatgttt ggctgcgacc tggggccgga 1260
cgggcgcctc ctccgcgggt ataaccagtt cgcctacgac ggcaaggatt acatcgccct 1320
gaacgaggat ctgcgctcct ggaccgccgc ggacacggcg gctcagatca cccagcgcaa 1380
gtgggaggcg gcccgtgagg cggagcagcg gagagcctac ctggagggca cgtgcgtgga 1440
gtggctccgc agatacctgg agaacgggaa ggagacgctg cagcgcgcgg gtaccagggg 1500
cagtggggag ccttccccat ctcccgtaga tctcccggga tggcctccca cgaggagggg 1560
aggaaaatgg gatcagcgct agaatatcgc cctcccttga atggagaatg ggatgagttt 1620
tcctgagttt cctctgaggg ccccctctgc tctctaggac aattaaggga tgaagtcctt 1680
gaggaaatgg aggggaagac agtccctgga atactgatca ggggtcccct ttgaccactt 1740
tgaccactgc agcagctgtg gtcaggctgc tgacctttct ctcaggcctt gttctctgcc 1800
tgacgctcaa tgtgtttgaa ggtttgattc cagcttttct gagtccttcg gcctccactc 1860
aggtcaggac cagaagtcgc tgttcctccc tcagagacta gaactttcca atgaatagga 1920
gattatccca ggtgcctgtg tccaggctgg cgtctgggtt ctgtgccccc ttccccaccc 1980
caggtgtcct gtccattctc aggatggtca catgggcgct gttggagtgt cgcaagagag 2040
atacaaagtg tctgaatttt ctgactcttc ccatcagaac acccaaagac acacgtgacc 2100
caccatcccg tctctgacca tgaggccacc ctgaggtgct gggccctggg cttctaccct 2160
gcggagatca cactgacctg gcagtgggat ggggaggacc aaactcagga caccgagctt 2220
gtggagacca ggccagcagg agatggaacc ttccagaagt gggcagctgt ggtggtgcct 2280
tctggagaag agcagagata cacgtgccat gttcagcacg aggggctgcc ggagcccctc 2340
accctgagat ggagtaagga gggggatgag gggtgatgtg tcttctcagg gaaagcagaa 2400
gtcctggagc ccttcagccg ggtcagggct gaggcttgga ggtcagggcc cctcaccttc 2460
ccctcctttc ccagagccgt cttcccagcc caccatcccc atcgtgggca tcgttgctgg 2520
cctggctgtc ctggctgtcc tagctgtcct aggagctatg gtggctgttg tgatgtgtag 2580
gaggaagagc tcaggtaggg aaggggtgag gagtggggtc tgggttttct tgttccactg 2640
ggagtttcaa gccccaggta gaagtgtgcc ccacctcgtt actggaagca ccatccacac 2700
atgggccatc ccagcctggg accctgtgtg ccagcactta ctctgttgtg aagcacatga 2760
caatgaagga cagatgtatc accttgatga ttatggtgtt ggggtccttg attccagcat 2820
tcatgagtca ggggaaggtc cctgctaagg acagacctta ggagggcagt tgcttcagaa 2880
cccacagctg ctttccccgt gtttcctgat cctgccctgg gtctgcagtc atagttctgg 2940
aaacttctct tgggtccaag actaggaggt tcccctaaga tcgcatggcc ctgcctcctc 3000
cctgtcccct cacagggcat tttcttccca caggtggaaa aggagggagc tgctctcagg 3060
ctgcgtgtaa gtgatggcgg tgggcgtgtg gaggagctca cccaccccat aattcctctt 3120
gtcccacatc tcctgcgggc tctgaccagg nnnttttttt tgttctaccc cagccagcaa 3180
cagtgcccag ggctctgatg agtctctcat cgcttgtaaa ggtgagattc tggggagctg 3240
aagtggtcgg gggtggggca gagggaaaag gcctaggtaa tggggatcct ttgattggga 3300
cgtttcgaat gtgtggtgag ctgttcagag tgtcatcact taccatgact gacctgaatt 3360
tgttcatgac tattgtgttc tgtagcctga gacagctgcc tgtgtgggac tgagatgcag 3420
gatttcttca cacctctcct ttgtgacttc aagagcctct ggcatctctt tctgcaaagg 3480
catctgaatg tgtctgcgtt cctgttagca taatgtgagg aggtggagag acagcccacc 3540
cccgtgtcca ccgtgacccc tgtccccaca ctgacctgtg ttccctcccc gatcatcttt 3600
cctgttccag agaagtgggc tggatgtctc catctctgtc tcaacttcat ggtgcgctga 3660
gctgcaactt cttacttccc taatgaagtt aagaacctga atataaattt gttttctcaa 3720
atatttgcta tgaagggttg atggattaat taaataagtc aattcctgga agttgagaga 3780
gcaaataaag acctgagaac cttccagaat ccgcatgttc gctgtgctga gtctgttgca 3840
ggtgggggtg gggaaggctg tgaggagccg agtgtggacg gggcctgtgc ctagttgctg 3900
ttcagttctt catgggcttt atgtggtcag tcctcagctg ggtcaccttc actgctccat 3960
tgtccttgtc ccttcagtgg aaacttgtcc agcgggagct gtgaccacag aggctcacac 4020
atcgcccagg gcagcccctg cacacgggag tccctgtgct ttctgagaca aattttcaga 4080
cccattcagc tcctgccctc cttctagggc tcctcttctg ctttggtctc ctgccctctc 4140
tcccttccct gattccagtg atcttcgtgc tgactccaat cccaactcat gaatctaaag 4200
cagagcctaa tttagattt 4219
//