Dbfetch
ID ON892117; SV 1; linear; genomic DNA; STD; HUM; 4839 BP. XX AC ON892117; XX DT 31-MAY-2023 (Rel. 144, Created) DT 01-JUN-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DPA1) gene, HLA-DPA1*02var allele, DE exons 1 through 4 and partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4839 RA Kally J.; RT ; RL Submitted (29-JUN-2022) to the INSDC. RL Scientific Development, Anthony Nolan Histocompatibility Laboratory, 77B RL Fleet Road, London NW3 2QU, United Kingdom XX DR MD5; 4e898f5f9d2ac5482a2a6106954344b1. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.25 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4839 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>4839 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*02var" FT mRNA join(<1..73,3640..3885,4226..4507,4722..>4839) FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*02var" FT /product="MHC class II antigen" FT CDS join(<1..73,3640..3885,4226..4507,4722..>4839) FT /codon_start=1 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*02var" FT /product="MHC class II antigen" FT /protein_id="WBV79783.1" FT /translation="IRAVILRALSLAFLLSLRGAGAIKADHVSTYAMFVQTHRPTGEFM FT FEFDEDEQFYVDLDKKETIWHLEEFGRAFSFEAQGGLANIAILNNNLNTLIQRSNHTQA FT ANDPPEVTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPRT FT DYSFHKFHYLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLV FT LGLVGIIVGTVLIIKSLR" FT exon <1..73 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*02var" FT /number=1 FT intron 74..3639 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*02var" FT /number=1 FT exon 3640..3885 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*02var" FT /number=2 FT intron 3886..4225 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*02var" FT /number=2 FT exon 4226..4507 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*02var" FT /number=3 FT intron 4508..4721 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*02var" FT /number=3 FT exon 4722..>4839 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*02var" FT /number=4 XX SQ Sequence 4839 BP; 1264 A; 1162 C; 923 G; 1490 T; 0 other; atcagagctg tgatcttgag agccctctcc ttggctttcc tgctgagtct ccgaggagct 60 ggggccatca agggtgagtg ctcaggagga cgcaagagcg tcggggtgag tgatggggtg 120 gttcacatca attgttgctt caggaatcac agattttagg ggctcattga tctatctggt 180 cctcatagtc tatgttccct ctggccctca taataataac agcaataaca gccagaattt 240 atgagacgcc tgcatagttt ctttccccat ttacatctca caggaacctt caatgaagat 300 aatattccat tcatttagaa attattcctt ttatttagaa attattttga aaaaactgaa 360 gctcaaaaag atgaataagt tttccaaggt tacacagcag atcaacgagc caagtttgaa 420 gtccagaccc agctctgagg gtcgtacact gccttcccca gattcctgca cacagtgacc 480 tactaccagg gccctcctat ctctctggga tccccagcct ctgtcttttg tggctgcttc 540 acaggaactc cgagctatgg actctgcatt aggagaggaa gtgcgaagag tgtttctgta 600 tcctctctct cttctaggac cctagggctc ttcctgggtc tttgtgggtg gtcacaagct 660 ttcctctctc aagacagcag ggttgcatgg tcttgatagc cttgtgattc gggttctgag 720 agatccagga ctgcaaggga ggcctagact tttgatagct gcaaggactc agccagagat 780 ggaccgtagt gaatgctcct ttttcctgta gctgaaatca gggagaatga catcaagcct 840 gtgcatgatg ctgtcattcc aaaatctagt gatggggaag gttagaatcc ataacgtaca 900 agatgcacac tggcttcaga cagttttatt taagatgtgt agaataaaga ggaggtcagg 960 ctgggtagaa ccagaagtat ctattgccct gttcgcggtc acctgagtta tttttaatgt 1020 tatgttataa taaacaccac aataggcttc tcttcataga tgcaaatact ttttagtatt 1080 cttggtagaa attcctaatg agctcagctg tctcttcagg gcttccctgc ccagtggttc 1140 cttgtctctt aacatttaaa catgtaattt accttaaaaa cataagtgca aatcaactga 1200 taaaaaacaa ccttgccttc agtctgcatc ctatcccaga gacactttct ttgtgtcctc 1260 acacgtggag ctaagcttct gacttgtctc tggtacatcc ctgaggatcc tctcatcttg 1320 gccatcagga acctctacag aaggtcaaat ccagtgggtt cttctcagtg cccctgactt 1380 gagttactaa taacatttgc actgtaatcc acttctttct gatgaactac cgtgtcctta 1440 tttttctcct gtttacctgg atcctcctta tcatccttta aatcacctct taattatcat 1500 gttctctcat tataccctga gatctcagca attctgattt ttggcactct tcctggaaaa 1560 tctcatttaa cctgtgcctg ccactaatga ctctcagttc tctggcctaa actcctctcc 1620 tgagaccacc cataatccac aaatgtctat gtattatttc tccttagatg actttcaggt 1680 cttctaagtg caatagcccc acagtgaact cagtatcttc tcccagtcag gctgtcttcc 1740 ccctgagaga agtggctttt gccctgtttt ctgaatgcct acattgaagc catctgttcc 1800 ccaggaagcc ttccctgatg tgctgcttga tcgcatcttg tgtataccca cgtatctgca 1860 cttatccttc tgaacctgct gttgtcttgt cacttgtgtt tccttctgtg acttatacgc 1920 gtctgcacaa caggacgtat gtattatttt tatttgagta tttagcatct aacagtgttt 1980 gacatatagt agtcttttaa tacatatttt tgtctgaatg gaaatgatat tttgaagtaa 2040 aataatctgt tccatagctg gctgatcttt ggactgcaga acttgtgaaa gtgtttttta 2100 aaaagcattt taaaaagtac aagggacatt catgtattaa gaagatgagt tttcaataac 2160 tgctagagga ctttgtgtct ttttatatta ccctcttttt cctgatgagt cctttgagtc 2220 ctttaaactg aggagcaagc taagtttcct agtgaaatac ctataggatt tgttttgttt 2280 agtttcaaat accactcttt gcttggccac ttactgtgtc agggagtcat tctcagtgaa 2340 aaataagaca cagatcatac cctctagaca cttacaatta cagtgacaag gagtcattct 2400 cctgtcccca catgtcaggg ctgaaaactc acagggaaat ccgtgagttg ggaagtgaga 2460 gcagaagagc tccatagttc cttctcactc tgatgcattt atcattctaa acccagactt 2520 tcacatacac attcatcatt ttctttcatg ataatagttg cttttatcct cttatctttg 2580 ctaattctta caaactaata aagactaaga aacaaaataa attaaatcct acaggtgttc 2640 caaactcagc aataatttct agttggcctc taaaacaaaa atcaaaatat aaatgtaaga 2700 aaagttcaga atgcttagta cctgcgtgat gaaataatct gtacactaaa cccccgaatc 2760 atgagtttac ctatacaaca aacctgcaca tgtactcctg aacataaaat aaatgttgaa 2820 atatttttaa aaaggaaaca aaagtttgga acaaatgcca aaataactgt actgtacttt 2880 tgaatttata tgccccaaat gaaaaatatt atcaacaaag ctatacattc tacattttca 2940 tgttcataaa ctaagacaga aactttaaaa ctgtcaagag cactaaaatt tgaaggatat 3000 tttcttcttc ctctcaattt cgtatttttt tctacctttt ctataataag aaaaagaaaa 3060 tgtccactct cccaacccca cgactctaaa aacaatttta catctgtgtc ctagaagaat 3120 taagaactta atgggataga aaacctctct actagttcca ccagtagccg tatgacctta 3180 gcaagttatt aatatgtaac ttccctgcat ttccttacct gtaaaatgta tgatatgtat 3240 ttgcttcata aagttattgt gacaattcaa cgagtgaata tgtaaagtat ttagaaggat 3300 gcctggcaca actaagtgct caacaaatgt tagctgtcat tgttactatt actattgtgt 3360 agggtcagga tgcccagact ttcaaagacc aggaagcagc ttgacttatc aatgataaac 3420 tttttatttt gttcttcact cctttctttt tataactgct catctgctct gtattatttc 3480 ctttatggtg ttgctccttc ttcttcccca tatgtccttc ctttgacctc ttactttctt 3540 cctttttata ttcataagtc tttattcatt ctctagcttt gaccacttgc atattcaaac 3600 tgacattttg tcatgttttt ctctactttc tttatgcagc ggaccatgtg tcaacttatg 3660 ccatgtttgt acagacccat agaccaacag gagagtttat gtttgaattt gatgaagatg 3720 agcagttcta tgtggatctg gacaagaagg agaccatctg gcatctggag gagtttggcc 3780 gagccttttc ctttgaggct cagggcgggc tggctaacat tgctatattg aacaacaact 3840 tgaatacctt gatccagcgt tccaaccaca ctcaggccgc caatggtact gcctatcttt 3900 gcctcttcct ctgtagccca actggaaggg atgagagggc ctctctgcca ccctcagact 3960 aggaagccta agtgccccct gctgtgtgat cctcttccac tagtggccgt gggctgatcc 4020 caccacagca agggctttca tcctctcttc tcaggagaga gaaaggtgag cagagtgagg 4080 ctggtcagtg gtgtgatacc cctctctgtg attcacagct gccataaaat ctaaggctga 4140 ggtagaggac caccctcccc caagaggtgg agcctttgtg attcatccca gaagagggac 4200 ctaacctggt gctgtctcct cctagatccc cctgaggtga cggtgtttcc caaggagcct 4260 gtggagctgg gccagcccaa caccctcatc tgccacattg acaggttctt cccaccagtg 4320 ctcaatgtca catggctgtg caatggggag ccggtcactg agggtgtcgc tgagagcctc 4380 ttcctgccca gaacagatta cagcttccac aagttccatt acctgacctt tgtgccctca 4440 gcagaggacg tctatgactg cagggtggag cactggggct tggaccagcc gctcctcaag 4500 cactggggta tgcaactgct tttctctcca taatctcctg gcatcctcta ttccaaagac 4560 ctggtgtcct ctgcaccagc tttccccact ggccaggtct cagtcctctc ctcgtcctaa 4620 catccaatta actggtccat aaccttcaat tcccacaacc atcccaggcc agaaccaccc 4680 tcactacacc tcctgaccct atctcttcat tcttccccca gaggcccaag agccaatcca 4740 gatgcctgag acaacggaga ctgtgctctg tgccctgggc ctggtgctgg gcctagtggg 4800 catcatcgtg ggcaccgtcc tcatcataaa gtctctgcg 4839 //