Dbfetch
ID ON841428; SV 1; linear; genomic DNA; STD; HUM; 11529 BP.
XX
AC ON841428;
XX
DT 14-JUN-2023 (Rel. 144, Created)
DT 15-JUN-2023 (Rel. 144, Last updated, Version 1)
XX
DE Homo sapiens haplotype DE-SMS_A-576407 MHC class II antigen (DPB1) gene,
DE DPB1*835:01:01:03 allele, complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-11529
RA Busch Y., Trojok P., Shealy G., Schweizer A., Schaefer M., Peter W.;
RT ;
RL Submitted (20-JUN-2022) to the INSDC.
RL HLA-Laboratory, Stefan-Morsch-Foundation, Dambacher Weg 3-5, Birkenfeld
RL 55765, Germany
XX
DR MD5; 9f38c5c7e1d242e3a4b2f69452cef8d2.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: NGSengine v. 2.25
CC Sequencing Technology :: Illumina; Oxford Nanopore Technologies
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..11529
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /haplotype="DE-SMS_A-576407"
FT /db_xref="taxon:9606"
FT gene <1..>11529
FT /gene="DPB1"
FT /allele="DPB1*835:01:01:03"
FT mRNA join(<1..466,5002..5265,9278..9559,10107..10217,
FT 10547..>11529)
FT /gene="DPB1"
FT /allele="DPB1*835:01:01:03"
FT /product="MHC class II antigen"
FT exon <1..466
FT /gene="DPB1"
FT /allele="DPB1*835:01:01:03"
FT /number=1
FT 5'UTR <1..366
FT /gene="DPB1"
FT /allele="DPB1*835:01:01:03"
FT CDS join(367..466,5002..5265,9278..9559,10107..10217,
FT 10547..10566)
FT /codon_start=1
FT /gene="DPB1"
FT /allele="DPB1*835:01:01:03"
FT /product="MHC class II antigen"
FT /protein_id="WDV74201.1"
FT /translation="MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYLFQGRQECY
FT AFNGTQRFLERYIYNREELVRFDSDVGEFRAVTELGRPAAEYWNSQKDLLEEKRALPDR
FT MCRHNYELVGPMTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQ
FT EETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDSA
FT RSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRGSA"
FT exon 5002..5265
FT /gene="DPB1"
FT /allele="DPB1*835:01:01:03"
FT /number=2
FT exon 9278..9559
FT /gene="DPB1"
FT /allele="DPB1*835:01:01:03"
FT /number=3
FT exon 10107..10217
FT /gene="DPB1"
FT /allele="DPB1*835:01:01:03"
FT /number=4
FT exon 10547..>11529
FT /gene="DPB1"
FT /allele="DPB1*835:01:01:03"
FT /number=5
FT 3'UTR 10567..>11529
FT /gene="DPB1"
FT /allele="DPB1*835:01:01:03"
XX
SQ Sequence 11529 BP; 3127 A; 2544 C; 2997 G; 2861 T; 0 other;
taatccctgt agatgggcca gcagaatatt tgagatcacc ttcagagcaa agaaaacgca 60
taatctcccc aaacatcatg acttatctga ctggttaaaa tgagtatcac tgtctttcct 120
ccgtcatctt aagtgcatca caggctttat attttcagac ctttcatact aactttctgc 180
ctagtgagca atgactcata caaagctcag tgtccattgg ttcttttctc agactctgtc 240
caatcccagg gtcacagaag actacttggg ttcatggtct ctaatatttc aaacaggagc 300
tccctttagc gagtccttct tttcctgact gcagctcttt tcattttgcc atccttttcc 360
agctccatga tggttctgca ggtttctgcg gccccccgga cagtggctct gacggcgtta 420
ctgatggtgc tgctcacatc tgtggtccag ggcagggcca ctccaggtaa gagccgaact 480
gccattcttg gagggtctgg ctcagggaac aattcctagg ggacgttatc tttaagggat 540
caaattctga gacaggctgc gggggctcct gccctaaggc agtgtcctct cttcccagct 600
agagaaagag gttcatcccc tataggatag cttgctaccc tactggccta ttctctctcc 660
aaggacatgg gtacagtaaa cagagagagg tgcccagtgg tcagtatgct tgtctttggg 720
gaaaatggga ccaagaggtc ctggataacc ttggacagac aaggtttgca gagagagaag 780
ttggcaagtg caggctcctg ggcgtgttca tgtctgcatc cagcctggag gggactcagg 840
cagagagccc taagctggag tgtccaggct ctgaggatca ctgaggattc agtgctcacg 900
aagaatgcct cttattcccc agggtggagc aggagcccac atcccttgga caattaagga 960
gagaagggag ggagggggat aggttttagc ccctgaaggc attctcatta aaggtacttc 1020
tcccagcctc cccagaactt ggttagggta ctagagtggg ttgcgacttg taggaagaat 1080
gagatgaggt tgtgtgggtg catgacaggg attgagtgta ggttatcaga cagccaagga 1140
agcagtaacc aagtgaaaaa tctcttcttc ctgctgcctc cctgtggctg gtgtaatatt 1200
atggcatcta tgatccattg tttttctctc aggatactct caggatattt ctttttatat 1260
atatatatac tttaagttct agggtacatg tgcacaacgt gcaggtttgt tacatatgta 1320
tacatgtgcc atgttggtgt gctgcaccca ttaactcgtc atttacatta ggtatatttc 1380
ctaatgctat ccctcccccc tccccccacc ccacaacagg ccccggtgta tgatgttccc 1440
cttcctgtgt ccatgtgttc tcattgttca gttcccacct atgagtgaga acatgtggtc 1500
tttggttttt tgtccttgca atagtttgct gtgaatgatg atttccagct tcctccatgt 1560
ccctacaaag gacatgaact catccttttt tatggctgca cagtattcca tggtgtatat 1620
gtgtgcattt tcttaatcca gtctatcact gatggacagt tgggttggtt ccaagtcttt 1680
gctattgtga atagtgccgc aataaacata tgtgtgcatg tgtctttata gcagcatgat 1740
ttataatcct ttgggtatat atccagtaat gggatggctg ggtcaaatgg tatttctagt 1800
tctagatctt tgaggaattg ccacactgtc ttgagatacc atctcacacc agttaaaatg 1860
gcgatcatta aaaagtcagg aaacaacagg tgctggagag gatgtggaga aataggaaca 1920
cttttactct gttggtggga ctgtaaacta gttcaaccat tgtactctca ggacatttct 1980
agtccaaatt tacaccaaca ctctgagagg aaggactgca aagtaggtac cttagttttc 2040
cactgacttc cacctttcct gcttacaccc ttcctcctag acctctccac acccctccta 2100
ggacacacct agaaggtact gacatcatgt cacctcctca tctttcaggg tagcaaggtt 2160
ggaatctcct gaatacagcc cctcaagccc taaaacctct tatctattac ctcgggttca 2220
ttgtccagga aggggaggag aacttgaact tgtagtcaca gaagggtgct gagaactaac 2280
cagcaggacg gctcagccct gggaactgca gaggggtgag gctggggaga gaggaggctg 2340
gagcagcact ggtgacactg aacagtgtca ggaggaggtg acggatgcgg catccccatc 2400
ccataggcag agctgtcatg tgggatgagg gacagtgttg ggagccacca aggaaaccca 2460
gaggtggggg agcagagagc agaagggggc atgtgatgct gggcagtgaa agggaggaca 2520
ggcaaaggct gggttgaggt ttgtaggggg aatgagatga ggcagtggag ccatgtgaca 2580
gggactgagg gtagattact ggagctccct gcgtagaatg aatgttcaat caaaatttgc 2640
tggagggaga gctggagcca taggggagtg ggtaaagtgg gcagggctga ttccacaatt 2700
ccctgcatgc tcccccaact ccacacacat ccccaacctc aaacagggca caagaccaaa 2760
gggctgagga gccaggctat agcttaaaga ggctggggga gaaaagcttg gctgagacaa 2820
cccataggga gctagaggtt tttaatatat cctattctga ataagagacg aattcattca 2880
gatcagtggt ttcaaaccgt gctctgggca actcaattgc taagggttcc acaaacagga 2940
taaagtttct tatatacaaa aaaaaatgaa ggtttcaaat tacaccataa agcccctcat 3000
tgcttatgtc tacttggcag gtaaattcca tttcaaaagt taaatgtact taaaaaatta 3060
cctaagactg ggtaaattaa aaaaattaaa tgttgcaaag aaaaaattca aaattcttat 3120
tcttgaatga aaaacgttct cttactggtg attgaggagg agaaacaaag actaacaaat 3180
gaaaatggga gaatccacac tcagagtggg gcaattgaac aggcaggggc ggatggatgg 3240
cagaggagga ggaatctgga ctcaaggagc tggggggctc tgggcctgga attttagggt 3300
ctggggccca aggcaccagg agaagaggca ggtcaggata tctgagtcaa gacctgggat 3360
cttgccttag caatgacact ggagactaaa ggtggactcc atggtgccct tgagcccagc 3420
cctaccccat ctccactatc ctctgccacc agctgtgcaa cttctgctag gggtgaggtt 3480
aataaactgg agaagttaat ttgtggagca tgaaacagat gagcagaaca atcacagcac 3540
cttaatttcc ccagtgtgcc caagaacaga gcaggcctga agatactcaa acagaaacaa 3600
acatgtgccg tgtcactgat aattctgtgt agacacacac ctgccagaca ctgctcatgg 3660
cactccctag gaagaacagc atgtgggaaa ggctgccaaa attgttcatg taaaaattac 3720
atcaatgctg tcttcctcgg tgctgcctat gcagctggca gccatctctt cctccacatc 3780
atggcctccc tcagactcct catgaaggat aagatcctca aaaagaggac caacaagttc 3840
atgaggcacc aatcagactg aaatgtcaaa attaagcata actggcggaa acccagaggt 3900
cttaacagta gggttcgtag aaggtccaag ggccagatct tgatgcccaa cattgcttat 3960
gggagcaaca acaacaacaa aaaacacatg ctgcccagtg gcttccagaa gtttctggcc 4020
cacagcctca aggagctgaa agtgctgctg atgtgcaaca aatcttactg tgctgagatc 4080
gctcacaaaa tttcctccag aactgcaaag tcatcatgga aagagtcacc cagccggcca 4140
tcagagtcac caaccccagt accagggtgc acagctaaga aaatgagtag aaagttcatg 4200
tccacgtttt gtgtgtaaat aaaaccataa aaactgccaa aaaaaattac atcaatgcct 4260
ctaaacccaa aggactctac ccccacaggt ccctggttgt tgtggtgatt ttcattgtgt 4320
aaaatacttt ccacatcttt tgacaccaag tctttctgca gccatgtttg aaaattaact 4380
ttcaggctac agagtctttc ttataccaaa gttgaagaaa gttttaagaa atatatttct 4440
acatctccta catgcaaaac aacaggagca agttgaggaa ttctcaagaa actggtcgag 4500
aagagagagc gcttagctat ggaaaagaga aagaaggaag ggagggcttc ctggaggagg 4560
tggcatttga accaggactg acatcaggat ggaaatgtca gtcagggagt taagtagggg 4620
gagcagctcc gccctccacg tccccagctc ctcccgcccc tgttttttct cccagtgacc 4680
ccacgtgaaa cgtctccgcc tcctccagcc accagcagaa gggactgcct tcccctcagt 4740
gctcgcccct ccctagtgat cactcagtgc ccctgagctc attcttttca gtaaattctc 4800
tctctgcgtg gtgagaaaac aggcctggag aggctctgcg acccgcttag gaccacagaa 4860
ctcggtacta ggaaaactcc tattttaaaa tccagccctg ggtgggaaga tttgggaaga 4920
atcgttaata ttgagagaga gagggagaaa gaggattaga tgagagtggc gcctccgctc 4980
atgtccgccc cctccccgca gagaattacc ttttccaggg acggcaggaa tgctacgcgt 5040
ttaatgggac acagcgcttc ctggagagat acatctacaa ccgggaggag ctcgtgcgct 5100
tcgacagcga cgtgggggag ttccgggcgg tgacggagct ggggcggcct gctgcggagt 5160
actggaacag ccagaaggac ctcctggagg agaagcgggc attgccggac aggatgtgca 5220
gacacaacta cgagctggtc gggcccatga ccctgcagcg ccgaggtgag tgagggcttt 5280
gggccggcgg tcccagggca gccccgcggg cccgtgccca gggcgcagga gcagccgggt 5340
tggcctaagg gaccttagtg ccgggcggaa aggggacttt gggttgggga ttcatggggg 5400
gagcccatct ggagcttgtc aggggagcga gcgcggggac ctggactggg ctgagcatgg 5460
agtgaggagg acgggagcag agagaccccc gggacttcat caggcctggc agctgactgc 5520
atgtggggtg agaaaaggaa gccacaggac agcgcacaag ggtgtggtgt ggagatggag 5580
gtggagatgg cacagcaggc cacacagaga agaaacctac agggaggtag ctgggtttga 5640
ggtgcttgag gggcagatgg gtggtctgat gggcaagtag acagaagggt ctgcagccga 5700
ggaggagact gagatacatg agaccatcca gggagagggg acccaggggg aagagcaaag 5760
gactggatcc tgggaactgg acagttgtga tttggccaag acagaaaagc ctgtgaaaga 5820
gaccaaaaaa acccaagtgc ggtgtgagga gaggcccgca gagaagagtc ttggaagctg 5880
aggggaggtg acctcagcag cacagtggac agcggtgcca gtgacttggg aaggtcagaa 5940
aacagaagat ggaaagtggg tttggaaacc agggagacct ggggagagca ggttggccgc 6000
agcggcagga gctggaatgg gagggggtgc atgaggctga gtgtggcgca tcctcctcgg 6060
ggctgagatg gattttactt gtcttgggtt ccccatggct ggcacagggc agtgtctgag 6120
ctcatttgcc ttttccttca ggaagtcggg gtgtaaaggg acggagagag gtgaggtgtg 6180
tgcggtaaga ggatttctca aggatgggac aggagggcct tggagctttg gcttcctcct 6240
gtgaatttgt ggggtgggga gcctggtgca ccaacctgag ggacctgagg gagtagtatc 6300
aggatgtggg attgagccct ggaccttttt tctagaaaga ggaaaaaatg aagggaggag 6360
gaggaggaag ctggggagat cacacctttg attttcttgt tcctggaaag tgaaaggaag 6420
ttcacctgct atgagtgaga aggtggacac actgggtggg gatgaggtga gtgacatgag 6480
cttaggaaag ttgctgaggt aattggttga gagaggtgtt caaataaaaa taacgcaatt 6540
ggcaaaaact gttactaaga ctttgtagag gcaccaatca gtgacatggc agcattttct 6600
ttcacagtaa tcaactgcca gattgcagac agccctgatg ccagcctaag gagtgtgggt 6660
ttctcctcca ggcccgcagg tccccaacct cactcctctg aagactcttc tggagatcct 6720
ctgtgatgca cagatctcca gactcagtgc ccccagactc agattccctg ggtggggagg 6780
tctggggatc tctgcttgta atcagctccc tagaggttcc catgtagcca gataagtatt 6840
gtcagaacac tgaagatttt tgaaaaatga aaaagagaag gttggagatg tgtcttcaga 6900
agactactaa gggtgctggc tagaggaggg accagaggca gggagatgag gtaggaaact 6960
gctattattt gtcagggaaa ttgcaatcaa ggcatgagtt agaacgggga aaacacagag 7020
gcaagggaga ggtggaaggg ggaggaaaga agtagtgaca attccagggt ggatgtccac 7080
ccaaatctag aagtaattga gcaaatgttt tctgggcatt agagaaggca actagaacaa 7140
acaggaatcc ttgccttggt gaaatgtatt tgaactgggt cagaaatgag gccattgggt 7200
atcaggcctt aactccagcg caccctggag gtcgctgatg tggctccagg ctgacctgct 7260
cctgtcaaag aatattgagc aagatgcctc tcgtggaatg ttctgggacc ttaaaacaga 7320
tacccaagta ttccccctga tttcatggtt cccagaagct ctatggggaa gaaattgtag 7380
gtaattcaca actgagattt agacataagt tgaatagtgt aatggacatt gagttaaccg 7440
aggtaatgaa gtagtgagac acaggtgccc ctgaaataaa ctcacattga gggaagaggc 7500
tgacaatgtg gatcagtctg aaaacaaggc aaaaatacaa tagggagtaa gggttgtgtg 7560
tcagttcaag actgtacttt tacctggccc agcgccatgt tagggtattt gtgttctcca 7620
ggaagtagaa atgaaagaac tgagtgatta gggacctaga agactaattt gagacattcc 7680
tcttgatgag ctgttctcta gggtagtcct ctgaaagagc tgttctctag tggatctccc 7740
tgaatgaact gttctctagg agcacttgac ccttttctgt gtttgttttt tgttttgtgt 7800
ttgtgtttgt ttttgagaca ggttctcact ctgtctccca ggctggagtg ctgtggcacc 7860
atcatggctc actgcagcct caacctcctg ggctcaagtg atcctcctgc ctcagcctcc 7920
catgtagcta gaactacaga tacacgtacc accatgtctg gctaatttat ttttcttttt 7980
agagatgggt tctcactatg ttgcccaggc cggtctcaaa accctgggct caagtgatcc 8040
tcatgcctca acctcccaaa gtgctaagat tataggcatg accaccatgc ctggcctttt 8100
ctgctttctg aggaggaaaa aggtactggt ggcagagatc caaaagaaaa gttgccagtg 8160
gcagtgtgga aattcacctg agaacaacag gacaagctgg ggcacaaatg caaagatgca 8220
gagggaggca acacctggtc atctgtgaga ccttcatggg acctgaagac gcagcacaga 8280
ggaggaactt gaaaaaggac gggatttcta ctactcaagc atgtaggagc tcaggatatt 8340
ctgtaaatat gaagattttg agtttttgta ggtgaggtaa aaaaatacat aggtttttta 8400
cagaataaga catgtaaagc tctcttcatt ttctttgtat tttcatgaag ttattagatt 8460
cacaggccac cataatgcca ttgtctgtat atcttaattt caagatatta tttgagtaaa 8520
ttttgcttcc tttgtatcaa gatagaactt tgaaaaggta ggtaatttca cagttgatca 8580
aatattcttt gcccaaatta cttttggtta aaatttctcc taaatgtgct acagagtgca 8640
aactctgtct ccctgccatt ccgctatata cttactaact attattttat tcaagatcat 8700
gcatgctcta cttgaaggtc tatttctatc ttttcaatgc tacccttacc cactagccta 8760
atcacattat tcctattttc aacatctagg aatcaattac atagtgaaca tgcctaagaa 8820
ataataatct gggcagatgc agtggctcag gcccgtaatc ccagcccttt gagaggccga 8880
gcgggtggat cacttgaggt caggcgttgg tcaagtgctc ctagagaacc aggctgacca 8940
acatggagaa accttgtctc tactaataat acaaaaatta gccaggtgaa gtggcaggca 9000
cctataatcc cagctattcg ggaggctgag gaaggagaat tggttgaagc ccggaggtgg 9060
aggttgcagt gagccaatat tgcgccactg cattccagac ttggcaacag agtgacactc 9120
catctcaaca aaaagaaaga atgaaagaaa gaaagagcga gattatgtct caaaaaaaag 9180
gaaggaagga aggaaggaag gaaggaagga aggaaggaag gaaggaaaga aggacaatct 9240
caaattctat ttcattattt ttcttccacg ctcctagtcc agcctagggt gaatgtttcc 9300
ccctccaaga aggggccctt gcagcaccac aacctgcttg tctgccacgt gacggatttc 9360
tacccaggca gcattcaagt ccgatggttc ctgaatggac aggaggaaac agctggggtc 9420
gtgtccacca acctgatccg taatggagac tggaccttcc agatcctggt gatgctggaa 9480
atgacccccc agcagggaga tgtctacacc tgccaagtgg agcacaccag cctggatagt 9540
cctgtcaccg tggagtggag tgagtctctg atgaccctct agaccccacc tctgaagagc 9600
aggggactct ctggctctgg ggtccactca ccttatcttc tgcatctata ccctggggcc 9660
atgtccaaac cccatctttc ttctatacca gctcctgagc atagtttgaa gccagggaaa 9720
tggagacttc ctgaccttgg cttaggggtt cctgaagatt catagttctc ccccttgtca 9780
gagaatctag ggacactgac tggtctcgaa accctcacac ttaggaactg acctcacaca 9840
taggaacagt tctcttcctt cagcatttta gcctcttctc aggcattttg agaggcaact 9900
tccagaatca gcatttgcca ccttgttgag gtcacacccc tgttccagat atgagggtgg 9960
ctctttctga atttcctctt agcaagcttt ttccgctgca ctgtcctcat cccgatatgc 10020
tgcatcaggc tccagaatct cagacaggac atgagtaggg atgcagctgg tggaggtgac 10080
actaaacctg ggtctgtcct tcccagaggc acagtctgat tctgcccgga gtaagacatt 10140
gacgggagct gggggcttcg tgctggggct catcatctgt ggagtgggca tcttcatgca 10200
caggaggagc aagaaaggtg agaaagcctg cagggtgagc gggacttacc ttcccctggc 10260
atattcacac ttattccacg atgaggggtt tgacagaaaa gaaatgtcag aaagctctag 10320
aggccactga tatcagataa tcggggaaca aacatgacct atagcgagag agggatccca 10380
ggctgggatc ttaatgcagc cagatgcatg aggtcccaag tactcaggct cctgcggagc 10440
gtccattgag tgatgggcaa tggaatttgg tgggatggaa atgtttctct aattatctga 10500
ggtggtttca atggctgatt atataacctt tcctctttca tttcagttca acgaggatct 10560
gcataaacag gtaatattcc tgctttgatt tccttgtggg gtgggttgca ggaggatatg 10620
agtcctttct gtgcattgta acactgaggc ccctccagga agggaatctc aggcatgaac 10680
ccctctttca atgtcagcct tcaggcaagt ggggaaagag cattgcttgg ctccattgct 10740
gaaggaagca gagatcaact ctgttattta tcagcctgag acgcatcctc tcaccataat 10800
ttttctctcc tggacttaca ggaaggaggc tggcaacctg ggataacttg tcctttaccc 10860
ccacagggtt cctgagctca ctgaaaagac tattgtgcct tagaaaaagc atttgctgtg 10920
tttcgttagc atctggctcc aggacagacc ttcaacttcc aaattggata ctgctgccaa 10980
gaagttgctc tgaagtcagt ttctatcatt ctgctctttg attcaaagca ctgtttctct 11040
cactgggcct ccaaccatgt tcccttcttc ttagcaccac aaataatcaa aacccaacat 11100
gactgtttgt tttcctttaa aaatatgcac caaatcatct ctcatcactt ttctctgagg 11160
gttttagtag acagtaggag ttaataaaga agttcatttt ggtttaaaca taggaaagaa 11220
gagaaccatg aaaatgggga tatgttaact attgtataat ggggcctgtt acacatgaca 11280
ctcttctgaa ttgactgtat ttcagtgagc tgcccccaaa tcaagtttag tgccctcatc 11340
catttatgtc tcagaccact attcttaact attcaatggt gagcagactg caaatctgcc 11400
tgataggacc catattccca cagcactaat tcaacatata ccttactgag agcatgtttt 11460
atcattacca ttaagaagtt aaatgaacat cagaatttaa aatcataaat ataatctaat 11520
acactttaa 11529
//