Dbfetch
ID ON792333; SV 1; linear; genomic DNA; STD; HUM; 3350 BP.
XX
AC ON792333;
XX
DT 19-OCT-2022 (Rel. 144, Created)
DT 19-OCT-2022 (Rel. 144, Last updated, Version 1)
XX
DE Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*12:02:47 allele,
DE complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-3350
RX PUBMED; 36161710.
RA Pinto A.S., Tambe M., D'Silva S.Z., Singh M.;
RT "Identification of the novel HLA-C*12:02:47 allele in an individual from
RT Maharashtra, India";
RL HLA 0:0-0(2022).
XX
RN [2]
RP 1-3350
RA Pinto A.S., Tambe M., D'Silva S.Z., Singh M.;
RT ;
RL Submitted (16-JUN-2022) to the INSDC.
RL Transplant Immunology & Immunogenetics Lab, ACTREC, Kharghar, Navi Mumbai,
RL Maharashtra 410210, India
XX
DR MD5; 805582099fa94132af92818eb929807c.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: NGSengine v. 2.25
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..3350
FT /organism="Homo sapiens"
FT /isolate="NGS359D1"
FT /mol_type="genomic DNA"
FT /country="India"
FT /sex="female"
FT /tissue_type="blood"
FT /db_xref="taxon:9606"
FT gene <1..>3350
FT /gene="HLA-C"
FT /allele="HLA-C*12:02:47"
FT mRNA join(<1..367,498..767,1014..1289,1877..2152,2274..2393,
FT 2833..2865,2973..3020,3185..>3350)
FT /gene="HLA-C"
FT /allele="HLA-C*12:02:47"
FT /product="MHC class I antigen"
FT exon <1..367
FT /gene="HLA-C"
FT /allele="HLA-C*12:02:47"
FT /number=1
FT 5'UTR <1..294
FT /gene="HLA-C"
FT /allele="HLA-C*12:02:47"
FT CDS join(295..367,498..767,1014..1289,1877..2152,2274..2393,
FT 2833..2865,2973..3020,3185..3189)
FT /codon_start=1
FT /gene="HLA-C"
FT /allele="HLA-C*12:02:47"
FT /product="MHC class I antigen"
FT /protein_id="UYD61897.1"
FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRN
FT LRGYYNQSEAGSHTLQRMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA
FT AQITQRKWEAAREAEQWRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVMCRRKSSGG
FT KGGSCSQAASSNSAQGSDESLIACKA"
FT exon 498..767
FT /gene="HLA-C"
FT /allele="HLA-C*12:02:47"
FT /number=2
FT exon 1014..1289
FT /gene="HLA-C"
FT /allele="HLA-C*12:02:47"
FT /number=3
FT exon 1877..2152
FT /gene="HLA-C"
FT /allele="HLA-C*12:02:47"
FT /number=4
FT exon 2274..2393
FT /gene="HLA-C"
FT /allele="HLA-C*12:02:47"
FT /number=5
FT exon 2833..2865
FT /gene="HLA-C"
FT /allele="HLA-C*12:02:47"
FT /number=6
FT exon 2973..3020
FT /gene="HLA-C"
FT /allele="HLA-C*12:02:47"
FT /number=7
FT exon 3185..>3350
FT /gene="HLA-C"
FT /allele="HLA-C*12:02:47"
FT /number=8
FT 3'UTR 3190..>3350
FT /gene="HLA-C"
FT /allele="HLA-C*12:02:47"
XX
SQ Sequence 3350 BP; 626 A; 981 C; 1049 G; 694 T; 0 other;
aggagaagag ggatcaggac gaagtcccag gtcccgggcg gggctctcag ggtctcaggc 60
tccaagggcc gtgtctgcac tggggaggcg ccgcgttgag gattctccac tcccctgagt 120
ttcacttctt ctcccaacct gcgtcgggtc cttcttcctg aatactcatg acgcgtcccc 180
aattcccact cccattgggt gtcgggttct agagaagcca atcagcgtct ccgcagtccc 240
ggttctaaag tccccagtca cccacccgga ctcggattct ccccagacgc cgagatgcgg 300
gtcatggcgc cccgaaccct catcctgctg ctctcgggag ccctggccct gaccgagacc 360
tgggcctgtg agtgcggggt tgggagggaa acggcctctg cggagaggag cgaggggccc 420
gcccggcgag ggcgcaggac ccggggagcc gcgcagggag gagggtcggg cgggtctcag 480
cccctcctcg cccccaggct cccactccat gaggtatttc tacaccgccg tgtcccggcc 540
cggccgcgga gagccccgct tcatcgcagt gggctacgtg gacgacacgc agttcgtgcg 600
gttcgacagc gacgccgcga gtccaagagg ggagccgcgg gcgccgtggg tggagcagga 660
ggggccggag tattgggacc gggagacaca gaagtacaag cgccaggcac aggctgaccg 720
agtgagcctg cggaacctgc gcggctacta caaccagagc gaggccggtg agtgaccccg 780
gcccggggcg caggtcacga cccctcccca tcccccacgg acggcccggg tcgccccgag 840
tctcccggtc tgagatccac cccgaggctg cggaacccgc ccagaccctc gaccggagag 900
agccccagtc acctttaccc ggtttcattt tcagtttagg ccaaaatccc cgcgggttgg 960
tcggggctgg ggcggggctc gggggacggg gctgaccacg ggggcggggc cagggtctca 1020
caccctccag aggatgtacg gctgcgacct ggggcccgac gggcgcctcc tccgcgggta 1080
tgaccagtcc gcctacgacg gcaaggatta catcgccctg aacgaggacc tgcgctcctg 1140
gaccgctgcg gacacggcgg ctcagatcac ccagcgcaag tgggaggcgg cccgtgaggc 1200
ggagcagtgg agagcctacc tggagggcac gtgcgtggag tggctccgca gatacctgga 1260
gaacgggaag gagacgctgc agcgcgcggg taccaggggc agtggggagc cttccccatc 1320
tcctgtagat ctcccgggat ggcctcccac gaggagggga ggaaaatggg atcagcgcta 1380
gaatatcgcc ctcccttgaa tggagaatgg gatgagtttt cctgagtttc ctctgagggc 1440
cccctctgct ctctaggaca attaagggat gaagtccttg aggaaatgga ggggaagaca 1500
gtccctggaa tactgatcag gggtcccctt tgaccacttt gaccactgca gcagctgtgg 1560
tcaggctgct gacctttctc tcaggccttg ttctctgcct cacgctcaat gtgtttaaag 1620
gtttgattcc agcttttctg agtccttcgg cctccactca ggtcaggacc agaagtcgct 1680
gttcctccct cagagactag aactttccaa tgaataggag attatcccag gtgcctgtgt 1740
ccaggctggc gtctgggttc tgtgccccct tccccacccc aggtgtcctg tccattctca 1800
ggatggtcac atgggcgctg ttggagtgtc gcaagagaga tacaaagtgt ctgaattttc 1860
tgactcttcc cgtcagaaca cccaaagaca cacgtgaccc accaccccgt ctctgaccat 1920
gaggccaccc tgaggtgctg ggccctgggc ttctaccctg cggagatcac actgacctgg 1980
cagcgggatg gcgaggacca aactcaggac accgagcttg tggagaccag gccagcagga 2040
gatggaacct tccagaagtg ggcagctgtg gtggtgcctt ctggagaaga gcagagatac 2100
acgtgccatg tgcagcacga ggggctgcca gagcccctca ccctgagatg gggtaaggag 2160
ggggatgagg ggtcatgtgt cttctcaggg aaagcagaag tcctggagcc cttcagccgg 2220
gtcagggctg aggcttgggg gtcagggccc ctcaccttcc cctcctttcc cagagccatc 2280
ttcccagccc accatcccca tcgtgggcat cgttgctggc ctggctgtcc tggctgtcct 2340
agctgtccta ggagctgtga tggctgttgt gatgtgtagg aggaagagct caggtaggga 2400
aggggtgagg agtggggtct gggttttctt gtcccactgg gagtttcaag ccccaggtag 2460
aagtgtgccc cacctcgtta ctggaagcac catccacaca tgggccatcc cagcctggga 2520
ccctgtgtgc tagcacttac tctgttgtga agcacatgac aatgaaggac agatgtatca 2580
ccttgatgat tatggtgttg gggtccttga ttccagcatt catgagtcag gggaaggtcc 2640
ctgctaagga cagaccttag gagggcagtt gctccagaac ccacagctgc tttccccgtg 2700
tttcctgatc ctgccctggg tctgcagtca tagttctgga aacttctctt gggtccaaga 2760
ctaggaggtt cccctaagat cgcatggccc tgcctcctcc ctgtcccctc acagggcatt 2820
ttcttcccac aggtggaaaa ggagggagct gctctcaggc tgcgtgtaag tgatggcggt 2880
gggcgtgtgg aggagctcac ccaccccata attcctcttg tcccacatct cctgcgggct 2940
ctgaccaggt cttttttttt gttctacccc agccagcaac agtgcccagg gctctgatga 3000
gtctctcatc gcttgtaaag gtgagattct ggggagctga agtggtctgg ggtggggcag 3060
agggaaaagg cctaggtaat ggggatcctt tgattgggac gtttcgaatg tgtggtgagc 3120
tgttcagagt gtcatcactt accatgactg acctgaattt gttcatgact attgtgttct 3180
gtagcctgag acagctgcct gtgtgggact gagatgcagg atttcttcac acctctcctt 3240
tgtgacttca agagcctctg gcatctcttt ctgcaaaggc atctgaatgt gtctgcgttc 3300
ctgttagcat aatgtgagga ggtggagaga cagcccaccc ccgtgtccac 3350
//