Dbfetch
ID ON792333; SV 1; linear; genomic DNA; STD; HUM; 3350 BP. XX AC ON792333; XX DT 19-OCT-2022 (Rel. 144, Created) DT 19-OCT-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*12:02:47 allele, DE complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-3350 RX PUBMED; 36161710. RA Pinto A.S., Tambe M., D'Silva S.Z., Singh M.; RT "Identification of the novel HLA-C*12:02:47 allele in an individual from RT Maharashtra, India"; RL HLA 0:0-0(2022). XX RN [2] RP 1-3350 RA Pinto A.S., Tambe M., D'Silva S.Z., Singh M.; RT ; RL Submitted (16-JUN-2022) to the INSDC. RL Transplant Immunology & Immunogenetics Lab, ACTREC, Kharghar, Navi Mumbai, RL Maharashtra 410210, India XX DR MD5; 805582099fa94132af92818eb929807c. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.25 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3350 FT /organism="Homo sapiens" FT /isolate="NGS359D1" FT /mol_type="genomic DNA" FT /country="India" FT /sex="female" FT /tissue_type="blood" FT /db_xref="taxon:9606" FT gene <1..>3350 FT /gene="HLA-C" FT /allele="HLA-C*12:02:47" FT mRNA join(<1..367,498..767,1014..1289,1877..2152,2274..2393, FT 2833..2865,2973..3020,3185..>3350) FT /gene="HLA-C" FT /allele="HLA-C*12:02:47" FT /product="MHC class I antigen" FT exon <1..367 FT /gene="HLA-C" FT /allele="HLA-C*12:02:47" FT /number=1 FT 5'UTR <1..294 FT /gene="HLA-C" FT /allele="HLA-C*12:02:47" FT CDS join(295..367,498..767,1014..1289,1877..2152,2274..2393, FT 2833..2865,2973..3020,3185..3189) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*12:02:47" FT /product="MHC class I antigen" FT /protein_id="UYD61897.1" FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRN FT LRGYYNQSEAGSHTLQRMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAAREAEQWRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" FT exon 498..767 FT /gene="HLA-C" FT /allele="HLA-C*12:02:47" FT /number=2 FT exon 1014..1289 FT /gene="HLA-C" FT /allele="HLA-C*12:02:47" FT /number=3 FT exon 1877..2152 FT /gene="HLA-C" FT /allele="HLA-C*12:02:47" FT /number=4 FT exon 2274..2393 FT /gene="HLA-C" FT /allele="HLA-C*12:02:47" FT /number=5 FT exon 2833..2865 FT /gene="HLA-C" FT /allele="HLA-C*12:02:47" FT /number=6 FT exon 2973..3020 FT /gene="HLA-C" FT /allele="HLA-C*12:02:47" FT /number=7 FT exon 3185..>3350 FT /gene="HLA-C" FT /allele="HLA-C*12:02:47" FT /number=8 FT 3'UTR 3190..>3350 FT /gene="HLA-C" FT /allele="HLA-C*12:02:47" XX SQ Sequence 3350 BP; 626 A; 981 C; 1049 G; 694 T; 0 other; aggagaagag ggatcaggac gaagtcccag gtcccgggcg gggctctcag ggtctcaggc 60 tccaagggcc gtgtctgcac tggggaggcg ccgcgttgag gattctccac tcccctgagt 120 ttcacttctt ctcccaacct gcgtcgggtc cttcttcctg aatactcatg acgcgtcccc 180 aattcccact cccattgggt gtcgggttct agagaagcca atcagcgtct ccgcagtccc 240 ggttctaaag tccccagtca cccacccgga ctcggattct ccccagacgc cgagatgcgg 300 gtcatggcgc cccgaaccct catcctgctg ctctcgggag ccctggccct gaccgagacc 360 tgggcctgtg agtgcggggt tgggagggaa acggcctctg cggagaggag cgaggggccc 420 gcccggcgag ggcgcaggac ccggggagcc gcgcagggag gagggtcggg cgggtctcag 480 cccctcctcg cccccaggct cccactccat gaggtatttc tacaccgccg tgtcccggcc 540 cggccgcgga gagccccgct tcatcgcagt gggctacgtg gacgacacgc agttcgtgcg 600 gttcgacagc gacgccgcga gtccaagagg ggagccgcgg gcgccgtggg tggagcagga 660 ggggccggag tattgggacc gggagacaca gaagtacaag cgccaggcac aggctgaccg 720 agtgagcctg cggaacctgc gcggctacta caaccagagc gaggccggtg agtgaccccg 780 gcccggggcg caggtcacga cccctcccca tcccccacgg acggcccggg tcgccccgag 840 tctcccggtc tgagatccac cccgaggctg cggaacccgc ccagaccctc gaccggagag 900 agccccagtc acctttaccc ggtttcattt tcagtttagg ccaaaatccc cgcgggttgg 960 tcggggctgg ggcggggctc gggggacggg gctgaccacg ggggcggggc cagggtctca 1020 caccctccag aggatgtacg gctgcgacct ggggcccgac gggcgcctcc tccgcgggta 1080 tgaccagtcc gcctacgacg gcaaggatta catcgccctg aacgaggacc tgcgctcctg 1140 gaccgctgcg gacacggcgg ctcagatcac ccagcgcaag tgggaggcgg cccgtgaggc 1200 ggagcagtgg agagcctacc tggagggcac gtgcgtggag tggctccgca gatacctgga 1260 gaacgggaag gagacgctgc agcgcgcggg taccaggggc agtggggagc cttccccatc 1320 tcctgtagat ctcccgggat ggcctcccac gaggagggga ggaaaatggg atcagcgcta 1380 gaatatcgcc ctcccttgaa tggagaatgg gatgagtttt cctgagtttc ctctgagggc 1440 cccctctgct ctctaggaca attaagggat gaagtccttg aggaaatgga ggggaagaca 1500 gtccctggaa tactgatcag gggtcccctt tgaccacttt gaccactgca gcagctgtgg 1560 tcaggctgct gacctttctc tcaggccttg ttctctgcct cacgctcaat gtgtttaaag 1620 gtttgattcc agcttttctg agtccttcgg cctccactca ggtcaggacc agaagtcgct 1680 gttcctccct cagagactag aactttccaa tgaataggag attatcccag gtgcctgtgt 1740 ccaggctggc gtctgggttc tgtgccccct tccccacccc aggtgtcctg tccattctca 1800 ggatggtcac atgggcgctg ttggagtgtc gcaagagaga tacaaagtgt ctgaattttc 1860 tgactcttcc cgtcagaaca cccaaagaca cacgtgaccc accaccccgt ctctgaccat 1920 gaggccaccc tgaggtgctg ggccctgggc ttctaccctg cggagatcac actgacctgg 1980 cagcgggatg gcgaggacca aactcaggac accgagcttg tggagaccag gccagcagga 2040 gatggaacct tccagaagtg ggcagctgtg gtggtgcctt ctggagaaga gcagagatac 2100 acgtgccatg tgcagcacga ggggctgcca gagcccctca ccctgagatg gggtaaggag 2160 ggggatgagg ggtcatgtgt cttctcaggg aaagcagaag tcctggagcc cttcagccgg 2220 gtcagggctg aggcttgggg gtcagggccc ctcaccttcc cctcctttcc cagagccatc 2280 ttcccagccc accatcccca tcgtgggcat cgttgctggc ctggctgtcc tggctgtcct 2340 agctgtccta ggagctgtga tggctgttgt gatgtgtagg aggaagagct caggtaggga 2400 aggggtgagg agtggggtct gggttttctt gtcccactgg gagtttcaag ccccaggtag 2460 aagtgtgccc cacctcgtta ctggaagcac catccacaca tgggccatcc cagcctggga 2520 ccctgtgtgc tagcacttac tctgttgtga agcacatgac aatgaaggac agatgtatca 2580 ccttgatgat tatggtgttg gggtccttga ttccagcatt catgagtcag gggaaggtcc 2640 ctgctaagga cagaccttag gagggcagtt gctccagaac ccacagctgc tttccccgtg 2700 tttcctgatc ctgccctggg tctgcagtca tagttctgga aacttctctt gggtccaaga 2760 ctaggaggtt cccctaagat cgcatggccc tgcctcctcc ctgtcccctc acagggcatt 2820 ttcttcccac aggtggaaaa ggagggagct gctctcaggc tgcgtgtaag tgatggcggt 2880 gggcgtgtgg aggagctcac ccaccccata attcctcttg tcccacatct cctgcgggct 2940 ctgaccaggt cttttttttt gttctacccc agccagcaac agtgcccagg gctctgatga 3000 gtctctcatc gcttgtaaag gtgagattct ggggagctga agtggtctgg ggtggggcag 3060 agggaaaagg cctaggtaat ggggatcctt tgattgggac gtttcgaatg tgtggtgagc 3120 tgttcagagt gtcatcactt accatgactg acctgaattt gttcatgact attgtgttct 3180 gtagcctgag acagctgcct gtgtgggact gagatgcagg atttcttcac acctctcctt 3240 tgtgacttca agagcctctg gcatctcttt ctgcaaaggc atctgaatgt gtctgcgttc 3300 ctgttagcat aatgtgagga ggtggagaga cagcccaccc ccgtgtccac 3350 //