Dbfetch
ID ON693239; SV 1; linear; genomic DNA; STD; HUM; 3011 BP. XX AC ON693239; XX DT 14-JUN-2023 (Rel. 144, Created) DT 15-JUN-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens isolate A3115D1 MHC class I antigen (HLA-B) gene, HLA-B*52var DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3011 RA Tambe M., D'Silva S.Z., Pinto A.S., Singh M.; RT ; RL Submitted (07-JUN-2022) to the INSDC. RL Transplant Immunology & Immunogenetics Lab, ACTREC, Kharghar, Navi Mumbai, RL Maharashtra 410210, India XX DR MD5; 864f2a3e022c3bc0c03b18306ec83590. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. v2.25 CC Assembly Name :: HLA-B CC Coverage :: Full gene CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3011 FT /organism="Homo sapiens" FT /isolate="A3115D1" FT /mol_type="genomic DNA" FT /country="India" FT /sex="male" FT /tissue_type="blood" FT /db_xref="taxon:9606" FT gene 1..3011 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT mRNA join(1..357,487..756,1002..1277,1853..2128,2233..2349, FT 2791..2823,2930..3011) FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /product="MHC class I antigen" FT exon 1..357 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /number=1 FT 5'UTR 1..284 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT CDS join(285..357,487..756,1002..1277,1853..2128,2233..2349, FT 2791..2823,2930..2973) FT /codon_start=1 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /product="MHC class I antigen" FT /protein_id="UVC66372.1" FT /translation="MRVTAPRTVLLLLWGAVALTETWAGSHSMRYFYTAMSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRETQISKTNTQTYRENLRI FT ALRYYNQSEAGSHTWQTMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLSSWTAADTA FT AQITQRKWEAAREAEQLRAYLEGLCVEWLRRHLENGKETLQRADPPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRRKSSGGK FT GGSYSQAASSDSAQGSDVSLTA" FT intron 358..486 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /number=1 FT exon 487..756 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /number=2 FT intron 757..1001 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /number=2 FT exon 1002..1277 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /number=3 FT intron 1278..1852 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /number=3 FT exon 1853..2128 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /number=4 FT intron 2129..2232 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /number=4 FT exon 2233..2349 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /number=5 FT intron 2350..2790 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /number=5 FT exon 2791..2823 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /number=6 FT intron 2824..2929 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /number=6 FT exon 2930..3011 FT /gene="HLA-B" FT /allele="HLA-B*52var" FT /number=7 FT 3'UTR 2974..3011 FT /gene="HLA-B" FT /allele="HLA-B*52var" XX SQ Sequence 3011 BP; 559 A; 899 C; 950 G; 603 T; 0 other; gatcaggacg aagtcccagg ccccgggcgg ggctctcagg gtctcaggct ccgagagcct 60 tgtctgcatt ggggaggcgc agcgttgggg attccccact cccacgagtt tcacttcttc 120 tcccaacctc tgtcgggtcc ttcttccagg atactcgtga cgcgtcccca tttcccactc 180 ccattgggtg tcggatatct agagaagcca atcagtgtcg ccggggtccc agttctaaag 240 tccccacgca cccacccgga ctcagaatct cctcagacgc cgagatgcgg gtcacggcgc 300 cccgaaccgt cctcctgctg ctctgggggg cagtggccct gaccgagacc tgggccggtg 360 agtgcggggt cgggagggaa atggcctctg tggggaggag cgaggggacc gcaggcgggg 420 gcgcaggacc tgaggagccg cgccgggagg agggtcgggc gggtctcagc ccctcctcgc 480 ccccaggctc ccactccatg aggtatttct acaccgccat gtcccggccc ggccgcgggg 540 agccccgctt catcgcagtg ggctacgtgg acgacaccca gttcgtgagg ttcgacagcg 600 acgccgcgag tccgaggacg gagccccggg cgccatggat agagcaggag gggccggagt 660 attgggaccg ggagacacag atctccaaga ccaacacaca gacttaccga gagaacctgc 720 ggatcgcgct ccgctactac aaccagagcg aggccggtga gtgaccccgg cccggggcgc 780 aggtcacgac tccccatccc ccacgtacgg cccgggtcgc cccgagtctc cgggtccgag 840 atccgcctcc ctgaggccgc gggacccgcc cagaccctcg accggcgaga gccccaggcg 900 cgtttacccg gtttcatttt cagttgaggc caaaatcccc gcgggttggt cggggcgggg 960 cggggctcgg gggacggtgc tgaccgcggg gccggggcca gggtctcaca cttggcagac 1020 gatgtatggc tgcgacgtgg ggccggacgg gcgcctcctc cgcgggcata accagtacgc 1080 ctacgacggc aaagattaca tcgccctgaa cgaggacctg agctcctgga ccgcggcgga 1140 caccgcggct cagatcaccc agcgcaagtg ggaggcggcc cgtgaggcgg agcagctgag 1200 agcctacctg gagggcctgt gcgtggagtg gctccgcaga cacctggaga acgggaagga 1260 gacgctgcag cgcgcgggta ccaggggcag tggggagcct tccccatctc ctataggtcg 1320 ccggggatgg cctcccacga gaagaggagg aaaatgggat cagcgctaga atgtcgccct 1380 cccttgaatg gagaatggca tgagttttcc tgagtttcct ctgagggccc cctcttctct 1440 ctaggacaat taagggatga cgtctctgag gaaatggagg ggaagacagt ccctagaata 1500 ctgatcaggg gtcccctttg acccctgcag cagccttggg aaccgtgact tttcctctca 1560 ggccttgttc tctgcctcac actcagtgtg tttggggctc tgattccagc acttctgagt 1620 cactttacct ccactcagat caggagcaga agtccctgtt ccccgctcag agactcgaac 1680 tttccaatga ataggagatt atcccaggtg cctgcgtcca ggctggtgtc tgggttctgt 1740 gccccttccc cacaccaggt gtcctgtcca ttctcaggct ggtcacatgg gtggtcctag 1800 ggtgtcccat gagagatgca aagcgcctga attttctgac tcttcccatc agacccccca 1860 aagacacacg tgacccacca ccccgtctct gaccatgagg ccaccctgag gtgctgggcc 1920 ctgggcttct accctgcgga gatcacactg acctggcagc gggatggcga ggaccaaact 1980 caggacactg agcttgtgga gaccagacca gcaggagata gaaccttcca gaagtgggca 2040 gctgtggtgg tgccttctgg agaagagcag agatacacat gccatgtaca gcatgagggg 2100 ctgccgaagc ccctcaccct gagatggggt aaggaggggg atgaggggtc atatctcttc 2160 tcagggaaag caggagccct tctggagccc ttcagcaggg tcagggcccc tcgtcttccc 2220 ctcctttccc agagccatct tcccagtcca ccatccccat cgtgggcatt gttgctggcc 2280 tggctgtcct agcagttgtg gtcatcggag ctgtggtcgc tactgtgatg tgtaggagga 2340 agagctcagg tagggaaggg gtgaggggtg gggtctgggt tttcttgtcc cactgggggt 2400 ttcaagcccc aggtagaagt gttccctgcc tcattactgg gaagcagcat ccacacaggg 2460 gctaacgcag cctgggaccc tgtgtgccag cacttactct tttgtgcagc acatgtgaca 2520 atgaaggacg gatgtatcac cttgatggtt gtggtgttgg ggtcctgatt tcagcattca 2580 tgagtcaggg gaaggtccct gctaaggaca gaccttagga gggcagttgg tccaggaccc 2640 acacttgctt tcctcgtgtt tcctgatcct gccttgggtc tgtagtcata cttctggaaa 2700 ttccttttgg gtccaagacg aggaggttcc tctaagatct catggccctg cttcctccca 2760 gtcccctcac aggacatttt cttcccacag gtggaaaagg agggagctac tctcaggctg 2820 cgtgtaagtg gtgggggtgg gagtgtggag gagctcaccc accccataat tcctcctgtc 2880 ccacgtctcc tgcgggctct gaccaggtcc tgtttttgtt ctactccagc cagcgacagt 2940 gcccagggct ctgatgtgtc tctcacagct tgaaaaggtg agattcttgg ggtctagagt 3000 gggcgggggg g 3011 //