Dbfetch
ID ON693230; SV 1; linear; genomic DNA; STD; HUM; 5677 BP. XX AC ON693230; XX DT 14-JUN-2023 (Rel. 144, Created) DT 15-JUN-2023 (Rel. 144, Last updated, Version 1) XX DE UNVERIFIED: Homo sapiens isolate A2987D1 MHC class II antigen (HLA-DQA1) DE gene, HLA-DQA1*01var allele, complete sequence. XX KW UNVERIFIED. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5677 RA Tambe M., Pinto A.S., D'Silva S.Z., Singh M.; RT ; RL Submitted (06-JUN-2022) to the INSDC. RL Transplant Immunology & Immunogenetics Lab, ACTREC, Kharghar, Navi Mumbai, RL Maharashtra 410210, India XX DR MD5; 4a1a0232a54328c5e6c6ad1ba263eeff. XX CC GenBank staff is unable to verify sequence and/or annotation CC provided by the submitter. CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. v2.23 CC Assembly Name :: HLA-DQA1 CC Coverage :: Full gene CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5677 FT /organism="Homo sapiens" FT /isolate="A2987D1" FT /mol_type="genomic DNA" FT /country="India" FT /sex="female" FT /tissue_type="blood" FT /db_xref="taxon:9606" FT gene 1..5677 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01var" FT /note="MHC class II antigen" XX SQ Sequence 5677 BP; 1642 A; 1193 C; 1259 G; 1583 T; 0 other; gtcctccctt tattcataga acaattcctc aagtccactc tgagtagagg ctgcatcaca 60 aggggattgc cccatctcct tccagggctc ttaatacaaa ctcttcaact agtaactgag 120 atgtcaccat aggggatttt tctaattggc caaaacctga cttggcaggg tttggtttgg 180 gtgtcttcag atttccttgt cttgaggtcc tcacaattac tctacagctc agaacaccaa 240 ctgctgaggc tgccttggga agaggatgat cctaaacaaa gctctgctgc tgggggccct 300 cgctctgacc accgtgatga gcccctgtgg aggtgaagac attgtgggtg agtgcatgag 360 tgagggatgt tctctggagc tgaaaaacag taaattgaag gaaaagagat aaagcgattt 420 gcagagaaac tgtagagatt tcctaagggc cctttcagta ttaagacaat taaaaattat 480 agctgttcct ccttcaggaa accagagccc caacctactc tttttgttat ctatgctgtt 540 gtgttcacta aggacgctat tctgtttata ttatattcag tgactacggc ctggaggtct 600 ctatgtcgtt ccatcatgat tgcctcaaaa attagtgagg tttccatcag tggataattt 660 tttattatta aaaatttatg aagtgtcatt ctcaaatttc cctgaacaac ttttgaagct 720 tttcggatgt ctccggtggt agatcttggg gtcattccat caattatgta ctctatagat 780 atttaaaatg ttgcccgttt ctttctctca gacttactca catttccaca tgggaactgg 840 cacaggtggg gagtgggtaa aggagtccag caggctgaat gccttcaaca atcattttac 900 cacatggtcc tcacttactc tcagctgcct catatgtgtc acctcacaag taatcaaata 960 aaatgggcat gtggctaagc tttgtaaata gtgaaaacat gaatgtcaat tttttttaca 1020 tatttctatt acagatatag cttcacattt cttttcttta gcaaaataag ggatcatttt 1080 attttaaaat tgagaagtag aaaaaattgg taaaataaat cattttattc tcaaattatc 1140 aacccaaatt acctgttctt cacctcatct aataaagtcc tataaaaaga aaagtgggcc 1200 agacaaggtg gctcatgcct gtaatcccag cactttggga ggccgaggca ggaggatcat 1260 ttgagcctgg gagcttgaga ccagcctggg caacatagca agacctcatc tctacaaaaa 1320 aagaaaaaga aaaattagcc aggcatggtg gtgtgtgcct gtggtgccag ctactcagaa 1380 ggctgccgtg ggaggaccac ttgagtccat gaggcggaag ctgcagtgag ccatgatggc 1440 accactacac tccagccagg gcaacagaga gagacgctgt ctcaaaaaga aagaggaaag 1500 aaagcgagga aggaaggaag gaaggagaag gaaggaagga aggaaaagaa aagaaaaggg 1560 aagggaggaa ggaaggaaaa aagaaagaca gaaagaaaga ggaaggaagg aaggaaggaa 1620 gcacagatta attatttggt ctcttactct cctctgcctt tgtcgtccat ctctttccac 1680 ctctcttcat gcatcccttt ctccctcttc cctttcagga tccatctctg gctccctgct 1740 cctttataga gatggacagt gggtttgtaa aacaaaagtt gaaaagtcag atagttaaaa 1800 ggggaagtga actggaaggt actttaaact ttcacaactt tattaaccgt ggctgctccc 1860 attatgattt tgttcggcag tggaagtttc acctgcttct ccagagcact tggcgtcttt 1920 gttccaaatt tcctttcttc aacctcacac cagagtgccc tggtcaggct tggctcattc 1980 attaggcaca atgtgggcag tgcaggggac cctccatact gtaaagccac atgagaaggt 2040 tttaactcgt tttaaaatta gaaaaataat ggaatattag agcctaagaa aatgttttaa 2100 cttttaattc agcctagatt atattgtctt tataccaatt cagtcataaa atataatttt 2160 ccatattttt gtggaggaag aggcccatac aagcaagaat gctcggggct cacatgtcag 2220 aatgcagcct tggtcatgac tgatcctggc cttcgtatgg ttctgctacc tgtgtgcctg 2280 cccgtcttcc ccaaaatcta tgtggtcctc gaatatagca actgtcattc aatacacatg 2340 tttgagcaca cagtgagcta agttttaagg attcaaagat gaaaagtcat gctgtcttcc 2400 ctgcagaggg tgctcagatt agtgatggaa acagtatggg gtgcaggaaa gcagaaggcc 2460 attgctgagc aggtcagtgg acccagcaga ggctgaaaca atacaagtga cttggttcca 2520 ggtgggccag cagggtgacg tcctctagca aaatttggca cccaagacaa gtaccagaag 2580 aaaagaaaga ctgcatgtat tccacatata ttcatgtttg aacaaggagt caagatttat 2640 ggcaaggata aggaggcttt gttggtgacc tgttaagacc aaccagggca gtcatgctgg 2700 atagggaaga aggtgagctg gaagaggaac agacaacttg gacagccaga tgttgagacg 2760 gaggggttgg aggtcataat gtggtcaaaa acatgttgat gagaggactc agctacaaag 2820 ttgttaactt aagcagaaac ctcaaggatg gattttagaa tttctccagg aagtcctaaa 2880 agataattcc atttcaggga gaaaaacaac agaccactgc aaagaccagg gaacatgaaa 2940 ggataatgta gtttgtcttg cttggcagat acttttgaag gatgttggac tgtaaggctg 3000 tcgatatcct cctcagagaa cttactacag tacattgtat ctgttccctt acctacctga 3060 ctcttccact attcagtttg ttccttaata gtagaccatg cctgattggt gttttacaca 3120 tctccggcta tgtctgacac ttgtggatgc tcagaaagtg gggaaggaag gaaagatacg 3180 atggtaaaag gcttacacat gtcttgacaa aaaagtccag tttggctcat ttggctggag 3240 tcgtactgca tggctgccat tctgctctgg catcctcaga caagcacact gcccattaga 3300 ggaaaaagtg tgatataagt gttgagtcag aatgctgtag acatttagta atctccttca 3360 caggaaaaaa aaaaaaaagg tggggggaat gacagaaatc caaaaactag tagagcttcc 3420 acttttcatt tcagaagaaa tcagttgctc tcctctaagg accattacta ttaacaaaac 3480 agagacctta gaaggaggca ttgtttattt attatatatt ttgtaatgtt attaccaatc 3540 ttgttatact ctttcttata ccctacaatt gttagcagaa attattttaa attaataaga 3600 tcctgcatgc ttttcctttt aaaaaaaaaa aaaaagaaag atctctgtgt agagtgtcct 3660 attctgagcc agtcctgaga ggaaaggaag tataatcaat ttgttattaa ccaatgaaag 3720 aattaagtga aagataaatc tcaggaagca gagggaagta aacctaattt ctgactaaga 3780 aagctaaata ctatgataac tcattcattc cttcttttgt tcaattacat tatttaatca 3840 taagtccatg acatgccagg cactcaggaa atagtaaaaa ttggacatgc gatattctgc 3900 ccttgtgtag cgcacactag agtgggaaag aaagtgcact tttaactgga caactaccaa 3960 catgatgagg ggaggaaaca ggggctggaa atgtccacgg actgtgccga aaaatgaagc 4020 ccataatatt tgaaagtcag tttcttccat cattttgtgt attaaggttc tttcttcccc 4080 tgttctccgc cttcctgctt gtcatcttca ctcatcagct gaccatgttg cctcttgtgg 4140 tgtaaacttg taccagtttt acggtccctc tggccagttc acccatgaat ttgatggaga 4200 tgagcagttc tacgtggacc tggagaagaa ggagactgcc tggcggtggc ctgagttcag 4260 caaatttgga ggttttgacc cgcagggtgc actgagaaac atggctgtgg caaaacacaa 4320 cttgaacatc atgattaaac gctacaactc taccgctgct accaatggta tgcgtccacc 4380 attctgcctc tctttactta agctatccct tcataccagg gttcattatt ttcttcccaa 4440 gaggtcccca gatcttctta tggcaattgc tgaaatttta tcatctccca tctctaaaat 4500 cacatattcc catgtaatac aagggtcttt ccattatgca ttcagcaaat ccttctagga 4560 gaggtctcat caacctccta ctttattaaa catgcccaca gagagaaggg cacaggaata 4620 aagcagaggc aatgtgtcat tgctcccaag cagaaggtaa ataagacctc tttgactatc 4680 aggtggtgaa atgctggtag gagggctctt ccaggatgta atgcagaact tcagggcaga 4740 gctattcaca cttcacacca gtgctgtttc ctcaccacag aggttcctga ggtcacagtg 4800 ttttccaagt ctcccgtgac actgggtcag cccaacaccc tcatctgtct tgtggacaac 4860 atctttcctc ctgtggtcaa catcacatgg ctgagcaatg ggcacgcagt cacagaaggt 4920 gtttctgaga ccagcttcct ctccaagagt gatcattcct tcttcaagat cagttacctc 4980 accttcctcc cttctgctga tgagatttat gactgcaagg tggagcactg gggcctggac 5040 cagcctcttc tgaaacactg gggtaaggat gagtttcatc attttttgat tctttcttgt 5100 ctgtcaggtt cagaacttcc tgccttttac tcctatatcc aaaaacttgt tttccacact 5160 tcatgggttt cttttctgtc tcactttttt ttttgaaaga ataaagcaaa aaaagcagag 5220 atttattgaa aatgaaagta cactctacag gatgggagtg ggcctgccac ttcatggttt 5280 tctaatgata gacttcactc tcctccctaa gctgggggcc ttgagtcttt gtagagccaa 5340 ccctgtaccc catcccatcc cacacacatg cacatgagca aactctgcat tctgacctca 5400 acaacttcac ttccacagag cctgagattc cagcccctat gtcagagctc acagagactg 5460 tggtctgtgc cctggggttg tctgtgggcc tcgtgggcat tgtggtgggc actgtcttca 5520 tcatccaagg cctgcgttca gttggtgctt ccagacacca agggcccttg tgaatcccat 5580 cctggaaggg aaggtaagat tgagactggt tacagttgaa gcggcagtat gaaaggaagg 5640 aaagtgggag ggcgttgtgg acatgaatgt ggtttaa 5677 //