Dbfetch

Dbfetch

ID   ON515754; SV 1; linear; genomic DNA; STD; HUM; 1752 BP.
XX
AC   ON515754;
XX
DT   23-JAN-2024 (Rel. 144, Created)
DT   24-JAN-2024 (Rel. 144, Last updated, Version 1)
XX
DE   Homo sapiens isolate NGS334D1 MHC class I antigen (HLA-B) gene, HLA-B*40var
DE   allele, exons 1 through 3 and partial cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-1752
RA   Tambe M., Rajak J., Pinto A.S., Pursaniya B., D'Silva S.Z., Singh M.;
RT   ;
RL   Submitted (12-MAY-2022) to the INSDC.
RL   Transplant Immunology & Immunogenetics Lab, ACTREC, Kharghar, Navi Mumbai,
RL   Maharashtra 410210, India
XX
DR   MD5; 68c10fdfd2f0249fbd88a9b377440c47.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: NGSengine v. v2.23
CC   Assembly Name         :: HLA-B
CC   Coverage              :: Full gene
CC   Sequencing Technology :: Illumina
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1752
FT                   /organism="Homo sapiens"
FT                   /isolate="NGS334D1"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /sex="female"
FT                   /tissue_type="blood"
FT                   /db_xref="taxon:9606"
FT   gene            1..>1752
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40var"
FT   mRNA            join(1..357,487..756,1001..>1276)
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40var"
FT                   /product="MHC class I antigen"
FT   exon            1..357
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40var"
FT                   /number=1
FT   5'UTR           1..284
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40var"
FT   CDS             join(285..357,487..756,1001..>1276)
FT                   /codon_start=1
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40var"
FT                   /product="MHC class I antigen"
FT                   /protein_id="UUT40615.1"
FT                   /translation="MRVTAPRTLLLLLWGAVALTETWAGSHSMRYFHTSVSRPGRGEPR
FT                   FITVGYVDDTLFVRFDSDATSPRKEPRAPWIEQEGPEYWDRETQISKTNTQTYRESLRN
FT                   LRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLRSWTAADTA
FT                   AQITQRKWEAARVAEQLRAYLEGECVEWLRRYLENGKETLQRA"
FT   intron          358..486
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40var"
FT                   /number=1
FT   exon            487..756
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40var"
FT                   /number=2
FT   intron          757..1000
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40var"
FT                   /number=2
FT   exon            1001..1276
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40var"
FT                   /number=3
FT   intron          1277..>1752
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*40var"
FT                   /number=3
XX
SQ   Sequence 1752 BP; 312 A; 560 C; 577 G; 303 T; 0 other;
     gatcaggacg aagtcccagg ccccgggcgg ggctctcagg gtctcaggct ccgagagcct        60
     tgtctgcatt ggggaggcgc agcattgggg attccccact cccacgagtt tcacttcttc       120
     tcccaaccta tgtcgggtcc ttcttccagg atactcgtga cgcgtcccca tttcccactc       180
     ccattgggtg tcgggtgtct agagaagcca atcagtgtcg ccggggtccc agttctaaag       240
     tccccacgca cccacccgga ctcagaatct cctcagacgc cgagatgcgg gtcacggcgc       300
     cccgaaccct cctcctgctg ctctgggggg cagtggccct gaccgagacc tgggctggtg       360
     agtgcggggt cggcagggaa atggcctctg tggggaggag cgaggggacc gcaggcgggg       420
     gcgcaggacc cggggagccg cgccgggagg agggtcgggc gggtctcagc ccctcctcgc       480
     ccccaggctc ccactccatg aggtatttcc acacctccgt gtcccggccc ggccgcgggg       540
     agccccgctt catcaccgtg ggctacgtgg acgacacgct gttcgtgagg ttcgacagcg       600
     acgccacgag tccgaggaag gagccgcggg cgccatggat agagcaggag gggccggagt       660
     attgggaccg ggagacacag atctccaaga ccaacacaca gacttaccga gagagcctgc       720
     ggaacctgcg cggctactac aaccagagcg aggccggtga gtgaccccgg cccggggcgc       780
     aggtcacgac tccccatccc ccacgtacgg cccgggtcgc cccgagtctc cgggtccgag       840
     atccgccccc gaggccgcgg gacccgccca gaccctcgac cggcgagagc cccaggcgcg       900
     tttacccggt ttcattttca gttgaggcca aaatccccgc gggttggtcg gggcggggcg       960
     gggctcgggg ggacggggct gacggcgggg gcggggccag ggtctcacac cctccagagc      1020
     atgtacggct gcgacgtggg gccggacggg cgcctcctcc gcgggcataa ccagtacgcc      1080
     tacgacggca aggattacat cgccctgaac gaggacctgc gctcctggac cgccgcggac      1140
     acggcggctc agatcaccca gcgcaagtgg gaggcggccc gtgtggcgga gcagctgaga      1200
     gcctacctgg agggcgagtg cgtggagtgg ctccgcagat acctggagaa cgggaaggag      1260
     acgctgcagc gcgcgggtac caggggcagt ggggagcctt ccccatctcc tataggtcgc      1320
     cggggatggc ctcccacgag aagaggagga aaatgggatc agcgctagaa tgtcgccctc      1380
     ccttgaatgg agaatggcat gagttttcct gagtttcctc tgagggcccc ctcttctctc      1440
     taggacaatt aagggatgac gtctctgagg aaatggaggg gaagacagtc cctagaatac      1500
     tgatcagggg tcccctttga cccctgcagc agccttggga accgtgactt ttcctctcag      1560
     gccttgttct ctgcctcaca ctcagtgtgt ttggggctct gattccagca cttctgagtc      1620
     actttacctc cactcagatc aggagcagaa gtccctgttc cccgctcaga gactcgaact      1680
     ttccaatgaa taggagatta tcccaggtgc ctgcgtccag gctggtgtct gggttctgtg      1740
     ccccttcccc ac                                                          1752
//