Dbfetch
ID ON502888; SV 1; linear; genomic DNA; STD; HUM; 3050 BP. XX AC ON502888; XX DT 12-JUL-2022 (Rel. 144, Created) DT 05-AUG-2022 (Rel. 144, Last updated, Version 2) XX DE Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*17:08 allele, complete DE cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3050 RA Vianna R., Porto L.C.; RT ; RL Submitted (11-MAY-2022) to the INSDC. RL Laboratorio de Histocompatibilidade e Criopreservacao - HLA/UERJ, Rio de RL Janeiro State University, Av Marechal Rondon 381, Rio de Janeiro, RJ RL 20950-003, Brazil XX DR MD5; f1898b198e73d4a84c79e1538f24a5fc. XX CC ##Assembly-Data-START## CC Assembly Method :: Omixon HLA Twin v. 4.6.0; GenDx NGSengine CC v. 2.25 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3050 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="HLA-UERJ-C14518" FT /db_xref="taxon:9606" FT gene 1..3050 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT mRNA join(1..188,319..588,835..1110,1698..1973,2098..2235, FT 2674..2706,2814..2861,3026..3050) FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /product="MHC class I antigen" FT exon 1..188 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=1 FT 5'UTR 1..115 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT CDS join(116..188,319..588,835..1110,1698..1973,2098..2235, FT 2674..2706,2814..2861,3026..3030) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /product="MHC class I antigen" FT /protein_id="UTB60291.1" FT /translation="MRVMAPQALLLLLSGALALIETWAGSHSMRYFYTAVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVNLRK FT LRGYYNQSEAGSHTIQRMYGCDLGPDGRLLRRYNQFAYDGKDYIALNEDLRSWTAADTA FT AQISQRKLEAAREAEQLRAYLEGECVEWLRGYLENGKETLQRAERPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRY FT TCHVQHEGLQEPCTLRWKPSSQPTIPNLGIVSGPAVLAVLAVLAVLAVLGAVVAAVIHR FT RKSSGGKGGSCSQAASSNSAQGSDESLIACKA" FT intron 189..318 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=1 FT exon 319..588 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=2 FT intron 589..834 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=2 FT exon 835..1110 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=3 FT intron 1111..1697 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=3 FT exon 1698..1973 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=4 FT intron 1974..2097 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=4 FT exon 2098..2235 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=5 FT intron 2236..2673 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=5 FT exon 2674..2706 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=6 FT intron 2707..2813 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=6 FT exon 2814..2861 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=7 FT intron 2862..3025 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=7 FT exon 3026..3050 FT /gene="HLA-C" FT /allele="HLA-C*17:08" FT /number=8 FT 3'UTR 3031..3050 FT /gene="HLA-C" FT /allele="HLA-C*17:08" XX SQ Sequence 3050 BP; 570 A; 892 C; 965 G; 623 T; 0 other; gcgtccccaa ttcccactcc cattgggtgt cgggttctag agaagccaat cagcgtctac 60 gcagtcccgg ttctgaagtc acccacccgg actcagattc tccccagacg ccgagatgcg 120 ggtcatggcg ccccaagccc tcctcctgct gctctcggga gccctggccc tgatcgagac 180 ctgggccggt gagtgcgggg ttgggaggga aacggcctct gcggagagga gcgaggggcc 240 cgcccggcga gggcgcagga cccggggagc cgcgcaggga ggagggtcgg gcgggtctca 300 gcccctcctc gcccccaggc tcccactcca tgaggtattt ctacaccgcc gtgtcccggc 360 ccggccgcgg agagccccgc ttcatcgcag tgggctacgt ggacgacacg cagttcgtgc 420 ggttcgacag cgacgccgcg agtccgagag gggagccgcg ggcgccgtgg gtggagcagg 480 aggggccgga gtattgggac cgggagacac agaagtacaa gcgccaggca caggctgacc 540 gagtgaacct gcggaaactg cgcggctact acaaccagag cgaggccggt gagtgacccc 600 agcccggggc gcaggtcacg acccctcccc atcccccacg gacggcccgg gtcgccccga 660 gtctcccggt ctgagatcct ccccgaggct gcggaacccg cccagaccct cgaccggaga 720 gagccctagt cgcctttacc cggtttcatt ttcagtttag gccaaaatcc ccgcgggttg 780 gtcggggctg gggcggggct cgggggacgg ggctgaccac gggggcgggg ccaggttctc 840 acaccatcca gaggatgtat ggctgcgacc tggggcccga cgggcgcctc ctccgcaggt 900 ataaccagtt cgcctacgac ggcaaggatt acatcgccct gaacgaggac ctgcgctcct 960 ggaccgcggc ggacacggcg gctcagatct cccagcgcaa gttggaggcg gcccgtgagg 1020 cggagcagct gagagcctac ctggagggcg agtgcgtgga gtggctccgc ggatacctgg 1080 agaacgggaa ggagacgctg cagcgcgcgg gtaccagggg cagtggggag ccttccccat 1140 ctcctataga tctcccggga tggcctccca cgaggagggg aggaaaatgg gatcagcgct 1200 agaatatcgc cctcccttga atggagaatg ggatgagttt tcccgagttt cctctgaggg 1260 ccccgtctgc tctctaggac aattaaggga tgaagtccct gaggaaatgg aggggaagac 1320 agtccctgga atactgatca ggggtcccct ttgaccactt tgaccactgc ggcagctgtg 1380 gtcaggctgc tgacctttct ctcaggcctt gttctctgcc tcacactcaa tgtgtctgaa 1440 ggtttgattc cagcttttct gagtccttcg gcctccactc aggtcaggac cagaagtcgc 1500 tgttcctccc tcagagacta gaactttcca aagaatagga gattatccca ggtccctgtg 1560 tccaggctgg cgtctgggtt ctgtgccccc ttccctaccc caggtgtcct gtccattctc 1620 aggatggtca catgggcgct gctggagtgt cgcaagagag atacaaagtg tctgaatttt 1680 ctgactcttc ccgtcagaac gcccaaagac acacgtgacc caccatcccg tctctgacca 1740 tgaggccacc ctgaggtgct gggccctggg cttctaccct gcggagatca cactgacctg 1800 gcagcgggat ggggaggacc aaactcagga caccgagctt gtggagacca ggccagcagg 1860 agatggaacc ttccagaagt gggcagctgt ggtggtgcct tctggacaag aacagagata 1920 cacgtgccat gtgcagcacg aggggctgca ggagccctgc accctgagat ggagtaagga 1980 gggggatgag gggtcatgtg tcttctcagg gaaagcagaa gtccttctgg agcccttcag 2040 ccgggtcagg gctgaggctt gggtgtaagg gcccctcacc ttcccctcct ttcccagagc 2100 cgtcttccca gcccaccatc cccaacttgg gcatcgtttc tggcccagct gtcctggctg 2160 tcctggctgt cctggctgtc ctagctgtcc taggagctgt ggtcgctgct gtgatacata 2220 ggaggaagag ctcaggtagg gaaggggtga ggagtggggt ctgggttttc ttgtcccact 2280 gggagtttca agccccaggt agaagtgtgc cccacctcgt tactggaagc accatccaca 2340 cctgggccat cccagcctgg gaccctgtgt gccagcactt actctgttgt gaagcacatg 2400 acaacgaagg acagatgtat caccttgatg attatggtgt tggggtcctg attccagcat 2460 tcgtgagtca ggggaaggtc cctgctaagg acagacctta ggagggcagt tgctccagaa 2520 cccacagctg ctttccccgt gtttcctgat cctgccctgg gtctgcagtc atagttctgg 2580 aaacttctct tgggtccaag actaggaggt tcccctaaga tcgcatggcc ctgcctcctc 2640 cctgtcccct cacagggcat tttcttccca caggtggaaa aggagggagc tgctctcagg 2700 ctgcgtgtaa gtgatggcgg tgggcgtgta gaggagctca cctaccccat aattcctctt 2760 gtcccacatc tcctgcgggc tctgaccagg tctttttttt tgttctaccc cagccagcaa 2820 cagtgcccag ggctctgatg agtctctcat cgcttgtaaa ggtgagattc tggggagctg 2880 aagtggtcgg gggtggggca gagggaaaag gcctgggtaa tggggatcct ttgattggga 2940 cgtttcgagt gtgtggtgga ctgttcagag tgtcatcact taccatgact gacctgaatt 3000 tgttcatgac tattgttttc tgtagcctga gacagctgcc tgtgtgggac 3050 //