Dbfetch
ID ON240995; SV 1; linear; genomic DNA; STD; HUM; 4156 BP. XX AC ON240995; XX DT 14-JUN-2023 (Rel. 144, Created) DT 15-JUN-2023 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens clone PSCDA0433 MHC class I antigen (HLA-C) gene, DE HLA-C-C*08var allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4156 RA Khor S.-S., Ito I., Sato T., Tokunaga K.; RT ; RL Submitted (12-APR-2022) to the INSDC. RL Department of Human Genetics, The University of Tokyo, Hongo 7-3-1, Bunkyo RL Ward, Tokyo 1130033, Japan XX DR MD5; 15d489bf9e577186dd35430c6c381bca. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.25.0.25342 CC Sequencing Technology :: PacBio CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4156 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="PSCDA0433" FT /db_xref="taxon:9606" FT gene <1..>4156 FT /gene="HLA-C" FT /allele="C*08var" FT mRNA join(<1..421,552..821,1068..1343,1931..2206,2328..2447, FT 2887..2919,3027..3074,3239..>4156) FT /gene="HLA-C" FT /allele="C*08var" FT /product="MHC class I antigen" FT exon <1..421 FT /gene="HLA-C" FT /allele="C*08var" FT /number=1 FT 5'UTR <1..348 FT /gene="HLA-C" FT /allele="C*08var" FT CDS join(349..421,552..821,1068..1343,1931..2206,2328..2447, FT 2887..2919,3027..3074,3239..3243) FT /codon_start=1 FT /gene="HLA-C" FT /allele="C*08var" FT /product="MHC class I antigen" FT /protein_id="WCB27357.1" FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPR FT FIAVGYVDDTQFVQFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRN FT LRGYYNQSEAGSHTLQRMYGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAARTAEQLRAYLEGTCVEWLRRYLENGKKTLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWGPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" FT exon 552..821 FT /gene="HLA-C" FT /allele="C*08var" FT /number=2 FT exon 1068..1343 FT /gene="HLA-C" FT /allele="C*08var" FT /number=3 FT exon 1931..2206 FT /gene="HLA-C" FT /allele="C*08var" FT /number=4 FT exon 2328..2447 FT /gene="HLA-C" FT /allele="C*08var" FT /number=5 FT exon 2887..2919 FT /gene="HLA-C" FT /allele="C*08var" FT /number=6 FT exon 3027..3074 FT /gene="HLA-C" FT /allele="C*08var" FT /number=7 FT exon 3239..>4156 FT /gene="HLA-C" FT /allele="C*08var" FT /number=8 FT variation 3242 FT /gene="HLA-C" FT /note="t3242g" FT 3'UTR 3244..>4156 FT /gene="HLA-C" FT /allele="C*08var" FT variation 3317 FT /gene="HLA-C" FT /note="a3317g" XX SQ Sequence 4156 BP; 802 A; 1183 C; 1237 G; 934 T; 0 other; agacagatcc ttggccagga ctcaggcaca cagtgtgaca aagatgcttg gtgtaggaga 60 agagggatca ggacgaagtc ccaggtcccg ggcggggctc tcagggtctc aggctccaag 120 ggccgtgtct gcactgggga ggcgccgcgt tgaggattct ccactcccct gagtttcact 180 tcttcttcca acctgcgtcg ggtccttctt cctgaatact catgacgcgt ccccaattcc 240 cactcccatt gggtgtcggg ttctagagaa gccaatcagc gtctccgcag tcccggttct 300 aaagtcccca gtcacccacc cggactcgga ttctccccag acgccgagat gcgggtcatg 360 gcgccccgaa ccctcatcct gctgctctcg ggagccctgg ccctgaccga gacctgggcc 420 tgtgagtgcg aggttgggag ggaaacggcc tctgcggaga ggagcgaggg gcccgcccgg 480 cgagggcgca ggacccgggg agccgcgcag ggaggagggt cgggcgggtc tcagcccctc 540 ctcgccccca ggctcccact ccatgaggta tttctacacc gccgtgtccc ggcccggccg 600 cggagagccc cgcttcatcg cagtgggcta cgtggacgac acgcagttcg tgcagttcga 660 cagcgacgcc gcgagtccaa gaggggagcc gcgggcgccg tgggtggagc aggaggggcc 720 ggagtattgg gaccgggaga cacagaagta caagcgccag gcacagactg accgagtgag 780 cctgcggaac ctgcgcggct actacaacca gagcgaggcc ggtgagtgac cccggcccgg 840 ggcgcaggtc ccgacccctc cccatccccc acggacggcc cgggtcgccc cgagtctccc 900 ggtctgagat ccaccccgag gctgcggaac ccgcccagac cctcgaccgg agagagcccc 960 agtcaccttt acccggtttc attttcagtt taggccaaaa tccccgcggg ttggtcgggg 1020 ctggggcggg gctcggggga cggggctgac cacgggggcg gggccagggt ctcacaccct 1080 ccagaggatg tatggctgcg acctggggcc cgacgggcgc ctcctccgcg ggtataacca 1140 gttcgcctac gacggcaagg attacatcgc cctgaatgag gacctgcgct cctggaccgc 1200 cgcggacacg gcggctcaga tcacccagcg caagtgggag gcggcccgta cggcggagca 1260 gctgagagcc tacctggagg gcacgtgcgt ggagtggctc cgcagatacc tggagaacgg 1320 gaagaagacg ctgcagcgcg cgggtaccag gggcagtggg gagccttccc catctcctgt 1380 agatctcccg ggatggcctc ccacgaggag gggaggaaaa tgggatcagc gctggaatat 1440 cgccctccct tgaatggaga atgggatgag ttttcctgag tttcctctga gggccccctc 1500 tgctctctag gacaattaag ggatgaagtc cttgaggaaa tggaggggaa gacagtccct 1560 ggaatactga tcaggggtcc cctttgacca ctttgaccac tgcagcagct gtggtcaggc 1620 tgctgacctt tctctcaggc cttgttctct gcctcacgct caatgtgttt aaaggtttga 1680 ttccagcttt tctgagtcct tcggcctcca ctcaggtcag gaccagaagt cgctgttcct 1740 ccctcagaga ctagaacttt ccaatgaata ggagattatc ccaggtgcct gtgtccaggc 1800 tggcgtctgg gttctgtgcc cccttcccca ccccaggtgt cctgtccatt ctcaggatgg 1860 tcacatgggc actgttggag tgtcgcaaga gagatacaaa gtgtctgaat tttctgactc 1920 ttcccgtcag aacacccaaa gacacacgtg acccaccatc ccgtctctga ccatgaggcc 1980 accctgaggt gctgggccct gggcttctac cctgcggaga tcacactgac ctggcagcgg 2040 gatggcgagg accaaactca ggacaccgag cttgtggaga ccaggccagc aggagatgga 2100 accttccaga agtgggcagc tgtggtggtg ccttctggag aagagcagag atacacgtgc 2160 catgtgcagc acgaggggct gccagagccc ctcaccctga gatggggtaa ggagggggat 2220 gaggggtcat gtgtcttctc agggaaagca gaagtcctgg agcccttcag ccgggtcagg 2280 gctgaggctt gggggtcagg gcccctcacc ttcccctcct ttcccagggc catcttccca 2340 gcccaccatc cccatcgtgg gcatcgttgc tggcctggct gtcctggctg tcctagctgt 2400 cctaggagct gtgatggctg ttgtgatgtg taggaggaag agctcaggta gggaaggggt 2460 gaggagtggg gtctgggttt tcttgtccca ctgggagttt caagccccag gtagaagtgt 2520 gccccacctc gttactggaa gcaccatcca cacatgggcc atcccagcct gggaccctgt 2580 gtgctagcac ttactctgtt gtgaagcaca tgacaatgaa ggacagatgt atcaccttga 2640 tgattatggt gttggggtcc ttgattccag cattcatgag tcaggggaag gtccctgcta 2700 aggacagacc ttaggagggc agttgctcca gaacccacag ctgctttccc cgtgtttcct 2760 gatcctgccc tgggtctgca gtcatagttc tggaaacttc tcttgggtcc aagactagga 2820 ggttccccta agatcgcatg gccctgcctc ctccctgtcc cctcacaggg cattttcttc 2880 ccacaggtgg aaaaggaggg agctgctctc aggctgcgtg taagtgatgg cggtgggcgt 2940 gtggaggagc tcacccaccc cataattcct cttgtcccac atctcctgcg ggctctgacc 3000 aggtcttttt ttttgttcta ccccagccag caacagtgcc cagggctctg atgagtctct 3060 catcgcttgt aaaggtgaga ttctggggag ctgaagtggt cgggggtggg gcagagggaa 3120 aaggcctagg taatggggat cctttgattg ggacgtttcg aatgtgtggt gagctgttca 3180 gagtgtcatc acttaccatg actgacctga atttgttcat gactattgtg ttctgtagcc 3240 tgagacagct gcctgtgtgg gactgagatg caggatttct tcacaccttt cctttgtgac 3300 ttcaagagcc tctggcatct ctttctgcaa aggcatctga atgtgtctgc gttcctgtta 3360 gcataatgtg aggaggtgga gagacagccc acccccgtgt ccaccgtgac ccctgtcccc 3420 acactgacct gtgttccctc cccgatcatc tttcctgttc cagagaagtg ggctggatgt 3480 ctccatctct gtctcaactt tacgtgtact gagctgcaac ttcttacttc cctactgaaa 3540 ataagaatct gaatataaat ttgttttctc aaatatttgc tatgagaggt tgatggatta 3600 attaaataag tcaattcctg gaagttgaga gagcaaataa agacctgaga accttccaga 3660 atccgcatgt tcgctgtgct gagtctgttg caggtggggg tggggaaggc tgtgaggaga 3720 cgagtgtgga cggggcctgt gcctagttgc tgttcagttc ttcatgggct ttatgtggtc 3780 agtcctcagc tgggtcacct tcactgctcc attgtccttg tcccttcagt ggaaacttgt 3840 ccagcgggag ctgtgaccac agaggctcac acatcgccca gggcagcccc tgcacacggg 3900 agtccctgtg ctttctgaga caaattttca gacccagtca gctcctgccc tccttctagg 3960 gctcctcttc tgctttggtc tcctgccctc tctcccttcc ctgattccag tgatcttcgt 4020 gctgactcca atcccaactc atgaatctaa agcagagcct aatttagatt tatatttgtt 4080 tgtaaaattg ggtccatagt ctagaattgt tccttcctga agagagaaac ctgattgtgt 4140 gctgcagtgt gcgggg 4156 //