Dbfetch
ID ON230238; SV 1; linear; genomic DNA; STD; HUM; 3087 BP.
XX
AC ON230238;
XX
DT 14-JUN-2023 (Rel. 144, Created)
DT 15-JUN-2023 (Rel. 144, Last updated, Version 1)
XX
DE Homo sapiens isolate 10300148063-A MHC class I protein (HLA-A) gene,
DE HLA-A*02extended allele, complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-3087
RA Kumar P., Shah S., Shah P., Chaudhary A., Thakker N.C., Kumar H., Buch H.,
RA Parihar D.;
RT ;
RL Submitted (11-APR-2022) to the INSDC.
RL Neuberg Center for Genomics Medicine, Neuberg Supratech Reference
RL Laboratories, 4th Floor, Kedar Building, Opp. Krupa Petrol Pump, Near
RL Parimal Garden, Ahmedabad, Gujarat 380006, India
XX
DR MD5; a0fbf1e808c1f91271f2f742b6a5aeb5.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: NGSengine v. 2.25
CC Assembly Name :: HLA-A
CC Coverage :: Whole gene
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..3087
FT /organism="Homo sapiens"
FT /isolate="10300148063-A"
FT /mol_type="genomic DNA"
FT /country="India"
FT /tissue_type="whole blood edta"
FT /db_xref="taxon:9606"
FT gene <1..>3087
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT mRNA join(<1..180,311..580,822..1097,1698..1973,2073..2189,
FT 2628..2660,2803..2850,3020..>3087)
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /product="MHC class I protein"
FT exon <1..180
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=1
FT 5'UTR <1..107
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT CDS join(108..180,311..580,822..1097,1698..1973,2073..2189,
FT 2628..2660,2803..2850,3020..3024)
FT /codon_start=1
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /product="MHC class I protein"
FT /protein_id="WCD42017.1"
FT /translation="MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGT
FT LRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMA
FT AQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHE
FT ATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRY
FT TCHVQHEGLPKPLTLRWEPSSQPTIPIVGIIAGLVLFGAVITGAVVAAVMWRRKSSDRK
FT GGSYSQAASSDSAQGSDVSLTACKV"
FT intron 181..310
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=1
FT exon 311..580
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=2
FT intron 581..821
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=2
FT exon 822..1097
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=3
FT intron 1098..1697
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=3
FT exon 1698..1973
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=4
FT intron 1974..2072
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=4
FT exon 2073..2189
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=5
FT intron 2190..2627
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=5
FT exon 2628..2660
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=6
FT intron 2661..2802
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=6
FT exon 2803..2850
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=7
FT intron 2851..3019
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=7
FT exon 3020..>3087
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
FT /number=8
FT 3'UTR 3025..>3087
FT /gene="HLA-A"
FT /allele="HLA-A*02extended"
XX
SQ Sequence 3087 BP; 599 A; 879 C; 956 G; 653 T; 0 other;
tcccattggg tgtcgggttt ccagagaagc caatcagtgt cgtcgcggtc gcggttctaa 60
agtccgcacg cacccaccgg gactcagatt ctccccagac gccgaggatg gccgtcatgg 120
cgccccgaac cctcgtcctg ctactctcgg gggctctggc cctgacccag acctgggcgg 180
gtgagtgcgg ggtcgggagg gaaacggcct ctgtggggag aagcaacggg cccgcctggc 240
gggggcgcag gacccgggaa gccgcgccgg gaggagggtc gggcgggtct cagccactcc 300
tcgtccccag gctctcactc catgaggtat ttcttcacat ccgtgtcccg gcccggccgc 360
ggggagcccc gcttcatcgc agtgggctac gtggacgaca cgcagttcgt gcggttcgac 420
agcgacgccg cgagccagag gatggagccg cgggcgccgt ggatagagca ggagggtccg 480
gagtattggg acggggagac acggaaagtg aaggcccact cacagactca ccgagtggac 540
ctggggaccc tgcgcggcta ctacaaccag agcgaggccg gtgagtgacc ccggcccggg 600
gcgcaggtca cgacctctca tcccccacgg acgggccagg tcgcccacag tctccgggtc 660
cgagatccgc cccgaagccg cgggaccccg agacccttgc cccgggagag gcccaggcgc 720
ctttacccgg tttcattttc agtttaggcc aaaaatcccc ccaggttggt cggggcgggg 780
cggggctcgg gggaccgggc tgaccgcggg gtccgggcca ggttctcaca ccgtccagag 840
gatgtatggc tgcgacgtgg ggtcggactg gcgcttcctc cgcgggtacc accagtacgc 900
ctacgacggc aaggattaca tcgccctgaa agaggacctg cgctcttgga ccgcggcgga 960
catggcagct cagaccacca agcacaagtg ggaggcggcc catgtggcgg agcagttgag 1020
agcctacctg gagggcacgt gcgtggagtg gctccgcaga tacctggaga acgggaagga 1080
gacgctgcag cgcacgggta ccaggggcca cggggcgcct ccctgatcgc ctgtagatct 1140
cccgggctgg cctcccacaa ggaggggaga caattgggac caacactaga atatcgccct 1200
ccctctggtc ctgagggaga ggaatcctcc tgggtttcca gatcctgtac cagagagtga 1260
ctctgaggtt ccgccctgct ctctgacaca attaagggat aaaatctctg aaggaatgac 1320
gggaagacga tccctcgaat actgatgagt ggttcccttt gacacacaca ggcagcagcc 1380
ttgggcccgt gacttttcct ctcaggcctt gttctctgct tcacactcaa tgtgtgtggg 1440
ggtctgagtc cagcacttct gagtccttca gcctccactc aggtcaggac cagaagtcgc 1500
tgttccctct tcagggacta gaattttcca cggaatagga gattatccca ggtgcctgtg 1560
tccaggctgg tgtctgggtt ctgtgctccc ttccccatcc caggtgtcct gtccattctc 1620
aagatagcca catgtgtgct ggaggagtgt cccatgacag atgcaaaatg cctgaatgat 1680
ctgactcttc ctgacagacg cccccaaaac gcatatgact caccacgctg tctctgacca 1740
tgaagccacc ctgaggtgct gggccctgag cttctaccct gcggagatca cactgacctg 1800
gcagcgggat ggggaggacc agacccagga cacagagctc gtggagacca ggcctgcagg 1860
ggatggaacc ttccagaagt gggcggctgt ggtggtgcct tctggacagg agcagagata 1920
cacctgccat gtgcagcatg agggtttgcc caagcccctc accctgagat ggggtaagga 1980
gggagacggg ggtgtcatgt cttttaggga aagcaggagc ctctctgacc tttagcaggg 2040
tcagggcccc tcaccttccc ctcttttccc agagccgtct tcccagccca ccatccccat 2100
cgtgggcatc attgctggcc tggttctctt tggagctgtg atcactggag ctgtggtcgc 2160
tgctgtgatg tggaggagga agagctcagg tggggaaggg gtgaagggtg ggtctgagat 2220
ttcttgtctc actgagggtt ccaagaccca ggtagaagtg tgccctgcct cgttactggg 2280
aagcaccacc cacaattatg ggcctaccca gcctgggccc tgtgtgccag cacttactct 2340
tttgtaaagc acctgttaaa atgaaggaca gatttatcac cttgattaca gcggtgatgg 2400
gacctgatcc cagcagtcac aagtcacagg ggaaggtccc tgaggacctt caggagggcg 2460
gttggtccag gacccacacc tgctttcttc atgtttcctg atcccgccct gggtctgcag 2520
tcacacattt ctggaaactt ctctgaggtc caagacttgg aggttcctct aggaccttaa 2580
ggccctgact cctttctggt atctcacagg acattttctt cccacagata gaaaaggagg 2640
gagctactct caggctgcaa gtaagtatga aggaggctga tgcctgaggt ccttgggata 2700
ttgtgtttgg gagcccatgg gggagctcac ccaccccaca attcctcctc tagccacatc 2760
ttctgtggga tctgaccagg ttctgttttt gttctacccc aggcagtgac agtgcccagg 2820
gctctgatgt gtctctcaca gcttgtaaag gtgagagcct ggagggcctg atgtgtgttg 2880
ggtgttgggc ggaacagtgg acacagctgt gctatggggt ttctttccat tggatgtatt 2940
gagcatgcga tgggctgttt aaagtgtgac ccctcactgt gacagatacg aatttgttca 3000
tgaatatttt tttctatagt gtgagacagc tgccttgtgt gggactgaga ggcaagagtt 3060
gttcctgccc ttccctttgt gacttga 3087
//