Dbfetch
ID ON116959; SV 1; linear; genomic DNA; STD; HUM; 6098 BP. XX AC ON116959; XX DT 23-JAN-2024 (Rel. 144, Created) DT 24-JAN-2024 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQA1) gene, HLA-DQA1-DQA1*06:03 DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6098 RA Edwards J.A.; RT ; RL Submitted (29-MAR-2022) to the INSDC. RL R&D, CareDx Pty Ltd, 20 Collie St, Fremantle, Western Australia 6160, RL Australia XX DR MD5; 797b5d1dff6a55003db799976007d859. XX CC ##Assembly-Data-START## CC Assembly Method :: AlloSeq Assign v. 1.0.3.1337 CC Sequencing Technology :: AlloSeq Tx Hybrid Capture; Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6098 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <325..>5723 FT /gene="HLA-DQA1" FT /allele="DQA1*06:03" FT mRNA join(<325..406,4266..4511,4924..5205,5569..>5723) FT /gene="HLA-DQA1" FT /allele="DQA1*06:03" FT /product="MHC class II antigen" FT CDS join(325..406,4266..4511,4924..5205,5569..5723) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="DQA1*06:03" FT /product="MHC class II antigen" FT /protein_id="WBW30811.1" FT /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQFTHEFDGDEQFYVDLGKKETVWCLPVLRQFRFDPQFALTNIAVTKHNLNILIKRSNS FT TAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFL FT SKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCAL FT GLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL" XX SQ Sequence 6098 BP; 972 A; 843 C; 775 G; 1067 T; 2441 other; cccatccctc ttgccactag cagacatgca cacaccagag aagattccaa tttagtgtcc 60 tccctctatt catagaatat ttcctcaagt ccactctgag tggaggctgc gtcacaacca 120 ggggatttcc ctgtctcctt ccagggctct taatacaaac tcttcaacta gtaactgagg 180 tgtcatcata ggggagtttt ctaattagcc aaaacctgac ctggcagggt ttggtttggg 240 tgtcttcaga tttgcttgtc tcgaggtcct cacaattgct ctacagctca gagcagcaac 300 tgctgaggct gccttgggaa gaggatgatc ctaaacaaag ctctgctgct gggggccctt 360 gccctgacca ccgtgatgag cccctgtgga ggtgaagaca ttgtgggtga gtgcatgagt 420 gagggatgtt ctctggagct ggaagagagg aaatcgaaga aaagagagaa agcgattttg 480 cagagaaatt gtagagattt cctaagggcc ccttcagtat taagagattt aaaaattacg 540 gctgtttctc cttcaggaaa ccagagtccc aacctactct ttttgttatc tatgctgttg 600 gcgttcacta aggatgctat tctgtttata ttgtattcag tcactacagc ctggaggtct 660 ctatgtcatt ccatcatgac tgcctcaaaa attggtgagg tttccatcag tcgataattt 720 tttattatta aaaatttgtg aagtatcatt ctcaaatttc cctgaacaac ttttgaagct 780 tttcggatgt ctcctgtagt agaccttggg gtaaatgatt ccatcaatta tatactctat 840 agatattaag aaagatgccc ttttctttct ctcagactta cttacatttc cacatgggaa 900 ctggcacagg tggggagtgg gtaaaggagt ccagcaggct gaatgccttc aacaatcatt 960 ttaccacatg gtcctcactt actctcagct gcctcatttg tgtcacctca caaataatca 1020 aataaaatgg gcatgtagtt aagctttgta aatagtgaaa acatgaatgt caattttatt 1080 tttacatatt tccattatag gagtagcttc acatttcttt tctttagcaa aataaggaat 1140 ccttttattt taaaattgag aatttatagt agaaaaactt gctaaattaa atcattttgt 1200 tctcaaatta tcaacccaaa ttacctgttg ttcacctcat ctaatgaagt cctataaaaa 1260 gaaaagtggg ttagacatgg tggctcatgc ctgtaatccc agcactttgg gaggctgagg 1320 caggaggatc ctttgagccc aggagttcga gaccagcctg ggcnnnnnnn nnnnnnnnnn 1380 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1440 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1500 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1560 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1620 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1680 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1740 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1800 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1860 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1920 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1980 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2040 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2100 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2160 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2220 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2280 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2340 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2400 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2460 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2520 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2580 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2640 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2700 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2760 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2820 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2940 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3000 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3060 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3120 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3180 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3240 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3300 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3360 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3420 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3480 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3540 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3600 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3660 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3720 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3780 nnnnnnnnnn nnnnntgtag agtgtcctgt tctgagccag tcctgagagg aaagaaagta 3840 caatcagttt attattaact gatgaaagaa ttaagtgaaa gatgaatctt aggaagcaga 3900 gggaagtaaa cctagtctct gactaagaaa gctaaatacc ataataactc attcattcct 3960 tcttttgttc aattacagta tttaatcgta agtccatgat gtgccaggca ctcaggaaat 4020 agtaaaaact ggacatgcga tattctgccc ttgtgtagca cacattatag tgggaaagaa 4080 agcgcaattt taaccggaca actaccaaca ctaagagcgg aggaagcagg ggctggaaat 4140 gtccacaggc tgtgccaaag atgaagcccg taatatttga aagtcagttt cttccatcat 4200 tttgtgtatt aaggttcttt cttcccctgt tctccacctt cctgcttgtc atcttcactc 4260 atcagctgac catgttgcct cttatggtgt aaacttgtac cagtcttacg gtccctctgg 4320 ccagttcacc catgaatttg atggagacga gcagttctac gtggacctgg ggaagaagga 4380 gactgtctgg tgtttgcctg ttctcagaca atttagattt gacccgcaat ttgcactgac 4440 aaacatcgct gtgacaaaac acaacttgaa catcctgatt aaacgctcca actctaccgc 4500 tgctaccaat ggtatgtgtc cacaattctg cccctcttta ctgatctatc ccttcatacc 4560 aagtttcatt attttacttc caagaggtcc ccagatcttc tcatggcaat tgctgaaatt 4620 ctatcacttc ccgtctctaa aatcacatat tcccatgtaa tacaagggtc tttccattat 4680 ccattcatta aatccttcta ggagaggtct catcaacctc ctactttatt aaacatgccc 4740 acagagagaa gggcatagga ataaagcaga ggcaatgtgt cgttgctccc aagcagaagg 4800 taaataagac ctctttgact atcaggtggt gaaatgctgg taggagggct cttccaggat 4860 gtaatgcaga agctcatggc agagctattc acacttcaca tcagtgctgt ttcctcacca 4920 cagaggttcc tgaggtcaca gtgttttcca agtctcccgt gacgctgggt cagcccaaca 4980 ccctcatctg tcttgtggac aacatctttc ctcctgtggt caacatcaca tggctgagca 5040 atgggcactc agtcacagaa ggtgtttctg agaccagctt cctctccaag agtgatcatt 5100 ccttcttcaa gatcagttac ctcaccttcc tcccttctgc tgatgagatt tatgactgca 5160 aggtggagca ctggggcctg gacgagcctc ttctgaaaca ctggggtaag gatgagttcc 5220 accacttttt gatgctttct tgtctgtcaa gttcagaact tcctgccttt tactcctata 5280 tcccaaaact tgttttccac acttcatggg tttctttnnn nnnnnngaaa gaataaagca 5340 acaaaagcaa agatttattg aaaatgaaag tacacttcac agggtgggaa cgggcctgag 5400 cataggggct caagagccac ttcatgggtt tctaatgata gacttcactc tcctccctaa 5460 gctgaggacc ttgagtcttt gcagagccaa ccctccaccc catcccatcc cacacacatg 5520 cacatgagca cactctgctt tctgacctca acgacttcat atccacagag cctgagattc 5580 cagcccctat gtcagagctc acagagactg tggtctgcgc cctgggattg tctgtgggcc 5640 tcgtgggcat tgtggtgggc actgtcttca tcatccgagg cctgcgttca gttggtgctt 5700 ccagacacca agggcccttg tgaatcccat cctggaaggg aaggtaagat tgagatttgt 5760 tagagctgaa tccgcagtat gagaggaagg aaagtggagg aggctgtgga caagaatggt 5820 tgaaagttgt aggggaattg ggaagtggca tgatgatgac ataggagcgg cctaggaccc 5880 atccatctca tgtctgtcct gttgcaggtg catcgccatc tacaggagca gaagagtgga 5940 cttgctacat gacctagcat tattttctgg ccccatttat catatccctt ttctcctcca 6000 aatgtttctc ctctcacctc ttctgtggga cttaaattgc tatatctgct cagagcttac 6060 aaatgccttt gaattatttc cctgacttcc tgattttt 6098 //