Dbfetch
ID ON062346; SV 1; linear; genomic DNA; STD; HUM; 5971 BP. XX AC ON062346; XX DT 09-MAY-2022 (Rel. 144, Created) DT 17-MAY-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens isolate DQA02NEW_22N17 MHC class II antigen (HLA-DQA1) gene, DE HLA-DQA1*02 NEW allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5971 RA Ferru-Clement R., Delobre O., Jollet I.; RT ; RL Submitted (02-MAR-2022) to the INSDC. RL HLA, EFS, 350 avenue Jacques Coeur, Poitiers 86000, France XX DR MD5; 4a82bd68625b7f8a0bdb710ce8c78d49. XX CC ##Assembly-Data-START## CC Assembly Method :: Omixon HLA Twin v. V4.4.1 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5971 FT /organism="Homo sapiens" FT /isolate="DQA02NEW_22N17" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <285..>5507 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*02 NEW" FT mRNA join(<285..366,4061..4306,4719..5000,5353..>5507) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*02 NEW" FT /product="MHC class II antigen" FT CDS join(285..366,4061..4306,4719..5000,5353..5507) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*02 NEW" FT /product="MHC class II antigen" FT /protein_id="UPT51140.1" FT /translation="MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQFTHEFDGDEEFYVDLERKETVWKLPLFHRLRFDPQFALTNIAVLKHNLNILIKRSNS FT TAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFL FT SKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCAL FT GLSVGLVGIVVGTVLIIRGLRSVGASRHQGPL" XX SQ Sequence 5971 BP; 1696 A; 1288 C; 1270 G; 1717 T; 0 other; aagattccaa tttagtgtct tccctctctt catagaacaa ttcctcaagt ccactctgag 60 tagaggctgc atcacaacaa ggggattgcc ctgtctcctt ccagggctct taatagaaac 120 tcttcaacta gtaactgaga tgtcaccatg ggggattttt ctaattggcc aaaacctgac 180 ttggcagggt ttggtttggg tgtcttcaga tttccttgtc ttgaggtcct cacaattact 240 ctacagctca gaacagcaac tgctgaggct gccttgggaa gaagatgatc ctaaacaaag 300 ctctgatgct gggggccctc gccctgacca ccgtgatgag cccttgtgga ggtgaagaca 360 ttgtgggtga gtgcgtgagt gaggaatgtt ctctggagct gaaaaacagt aaattgaagg 420 aaaagagaga aagcgatttg cagagaaatt gtagagattt cctaagaccc ctttcagtat 480 taagagaatt aaaaattata gctgttcctc cttcaggaaa ccagagcccc aacctactct 540 ttttgttatg tatgcttttg tgttcactaa ggatgctatt ctgtttatat tatattcagt 600 gactacagcc tggaggtctc tatgtcattc catcatgatt gcctcaaaaa ttagtgaggt 660 ttccatcagt ggataatttt ttattattaa aaatgtatga agtgtcattc tcaaatttcc 720 ctgaacaact tttgaagatt ttcggatgtc tcctgtagta gatcttgggg tcgttccatc 780 aattatatac tctatagata ttaaaaaagt tgcccgtttc tttctctcag acttactcac 840 atttccacat gggaactggc acaggtgggg agtaggtaaa ggagtccagc aggctgaatg 900 ccttcaacaa tcattttacc acatggtcct cacttactct cagctgcctc atatgtgtca 960 cctcacaaat aatcaaataa aatgggcatg tagctaagct ttgtaaatag tgaaaacatg 1020 gatgtcaatt gtttttacat atttctatta caggtatagc ttcacatttc ttttctttag 1080 caaaataagg gatcctttta gtttaaaatt gagaagtaga aaaaattggt aaattaaatc 1140 attttattct caaattatca acccaaatta cctgttcttc acctcatcta ataaagtcct 1200 ataaaaagaa aagtgggcca gacatggtgg ctcatgcctg taatcccagc actttgggag 1260 gccgaagcag gaggatcatt tgagcctggg agtttgagac cagcctgggc aacacagcaa 1320 gacctcatct ctaccaaaaa ataaaataaa aattagccag gcatggtagt gcatgcctgt 1380 ggtgccagct actcagaagg ctgcagtggg aggagcactt gagtccagga ggtggaagct 1440 gcagtgagcc atgatggcac cactacactc cagccagggc aacagagaga gaccctgtct 1500 caaaaagaaa gcggaaagaa agagagaaag gaaggaaaga aggaaagaag gaagcaagga 1560 aggagaaagg gaagggaaga aagaagaaag aaagaaagaa aacagaagga aggaagcaca 1620 gattaattat ttggtctctt agtctcctct gcctttgtcg tccatctctt cccacctctc 1680 ttcatgcatt cctttctccc tcttcccttt caggatccat ctctgactcc ctgctccttt 1740 atagagatgg acatgagttt gtaaaacaaa agttgaaaag tcagatagtt aaaaggggaa 1800 gtaaactgga aggtactcta aactttcaca accttattaa ccgtggcagc tcccattctg 1860 attttgttca gcagtggaag tttcaccctc tcctccagag cgcttggctt ctttgttcca 1920 aatttccttt cttcagcctc acaccagagt gccctggtca ggctcagctc atccattagg 1980 cacaatgtgg gcagtgcagg ggaacctcca tactgtaaag ccacatgaga atgttttaac 2040 tccttttaaa attataaaaa aatgaaattg tagagcctaa gaaaatgttt taacttttaa 2100 ttcagcctat attatattgt ctttatacca attcagtcat aaaatataat tttccatatt 2160 tttatggagg aaggcgtcca cacaagcaag agtgcttggg gctcacatgt cagaacgcat 2220 ccctgatcat ggctgatcct gaccttcgtg tggttctgct aactatgtgc ctgtcagtct 2280 tccccaaaat ctatgtggtc ctcaaatata acaactgtca ttcaatacac atgtttgagc 2340 acccagtgag ctaagtttta aggattcaaa gatgaaaagt catgctgtct cccctgcaga 2400 gggtgctcag actagtgatg gaaacagtat gggatgaaag aaagcagaag gccattgctg 2460 agcaggcagt ggactcagca gaggctgaaa ctatacaagt gacttggttc cagctgggcc 2520 agcaggataa ccagacgaaa agaaggattg catatattcc atatatattt atgtttgaac 2580 aaagagtcaa ggtttattgc aaggataagg aggctttgtt ggtggcctgt taagaccatc 2640 cagcgtggtc atactggata gggaagaagg tgagctggaa gagggataga caaacttgga 2700 tggccagatg ttgagatgga ggagctggag gtcataacgt ggtcaaaaac atgttgatga 2760 gaggacttag ctacaaagtt gttaacttaa gcagaaacct caaggattga ttttatgatt 2820 tctccaggaa gtcctaaaag ataatttcat ttcagggagg aaaacaacag accactgcaa 2880 agaccaggaa catgaaagga taatgtagtt tggtttgctt ggcagatact tgtgaaagat 2940 gttggactgt aaggctgtca atatcctcct cgcagaactt actacagtac attgtatctg 3000 ctcccttacc tacctgactc tcccactatt cagtttgttc cttaatggta gaccatgcct 3060 gattggtgtt ttacacttcc cctgctatgt ctgatacttg tggatgctca gaaagtgggg 3120 aaggaaggaa agatacgatg gtaaaaggct tacacatgtc ttgaccagaa tgttcagttt 3180 ggctcatttg gctggagtca tactgcatgg ctgccattct gctctggcat cctcagagaa 3240 gcacactgcc cattagagga aaaagggtga atataaatgt tgagtcagaa cactgcagac 3300 atttagtaac ctccttcaga ggaaaaaaag ggtgggggga atgacagaaa tccaaaaact 3360 agtagagctt ccactttttc atttcagaag aaatcagtta ctctcctcta aggaccatta 3420 ctattaacaa aacagagacc ttagaaggaa gcattattta tttatcatat attttgtaat 3480 gttattaccg ttcttgttat actctttctt ataccctacc attgttagca gaaattattt 3540 taaattaata agatcctgca tgcttttcct ttttctaaaa aaagaaagat ctctgtgtag 3600 aatgtcctgt tctgagccag tcctgagagg aaaggaagta taatcaattt gttattaact 3660 gatgaaagaa ttaagtgaaa gataaacctt aggaagcaga gggaagttaa tctatgacta 3720 agaaagttaa gtactctgat aactcattca ttccttcttc tgttcattta cattatttaa 3780 tcacaagtcc atgatgtgcc aggcactcag gaaatagtga aaatcggaca cgcgatattc 3840 tgcccttgtg tagcacacac tgtagtggga aagaaagtgc acttttaact ggacaactat 3900 caacacgaag aggggaggaa gcaggggctg gaaatgtcca cagactttgc caaagacaaa 3960 gcccataata tttgaaagtc agtttcttcc atcattttgt gtattaaggt tttttattct 4020 cctgttctct gccttcctgc ttgtcatctt cactcatcag ctgatcacgt tgcctcttac 4080 ggtgtaaact tgtaccagtc ttacggtccc tctggccagt tcacccatga atttgatgga 4140 gacgaggagt tctatgtgga cctggagagg aaggagactg tctggaagtt gcctctgttc 4200 cacagactta gatttgaccc gcaatttgca ctgacaaaca tcgctgtgct aaaacataac 4260 ttgaacatcc tgattaaacg ctccaactct accgctgcta ccaatggtat gtgtccacca 4320 ttctgccttt ctttactgat ctatcccttt ataccaagtt tcattatttt ctttccaaga 4380 ggtccccaga tcttctcatg gcaattgctg aaattttatc atttctcatc tctaaaatca 4440 catatcccca tgtaatacaa gggtctttcc attatgcatt cattaaatca ttctaggaga 4500 ggtctcatca acctcctact ttattaaaca tgcccacaga gagaagggca caggagtaaa 4560 gcagaggcaa tgtgtcattg ctcccaagta gaaggtaaat aaggcctctt tgaccagcag 4620 gagaggaaat gctggtagga agactcttcc aggatgtaat gcagaagctc agggcagagc 4680 tattcacact tcacaccagt gctgtttcct caccatagag gttcctgagg tcacagtgtt 4740 ttccaagtct cccgtgacac tgggtcagcc caacaccctc atctgtcttg tggacaacat 4800 ctttcctcct gtggtcaaca tcacctggct gagcaatggg cactcagtca cagaaggtgt 4860 ttctgagacc agcttcctct ccaagagtga tcattccttc ttcaagatca gttacctcac 4920 cttcctccct tctgctgatg agatttatga ctgcaaggtg gagcactggg gcctggatga 4980 gcctcttctg aaacactggg gtaaggatga gtttcaccat tttttgatgc tttcttgtct 5040 gtcaagttca gaacttcctg ccttttactc tatgtcccaa aacttgtttt ccacacttca 5100 tgagtttctt ttatcttttt ttttttttga aagaattaag caacaaaagc acagatttat 5160 taaaaaagaa agtacactcc acagggtggg agcaggcctg ccacttcatg ggtttctaat 5220 aacagacttc actctcctcc ctgagccagg ggccttgagt ctttgcagag ccaaccctcc 5280 accccatccc atccctcaca catgcacatg agcacactct gcattctgac ctcaacaact 5340 tcacttccac agagcctgag attccagcac ctatgtcaga gctcacagag actgtggtct 5400 gtgccctggg gttgtctgtg ggcctcgtgg gcattgtggt ggggaccgtc ttgatcatcc 5460 gaggcctgcg ttcagttggt gcttccagac accaagggcc cttgtgaatc ccatcctgaa 5520 aaagaaggta agtttgagat ttgttagagc tgaagctgca ggaaggaaag tgggaggagg 5580 ctgtggacat gaatgtggtt gaaagttgta ggggaattgg gaagtggcat gatgatgaca 5640 caggagcccc cttggaccca tcgatctcat gtctgtcctg ttgcaggtgc atcaccatct 5700 acagcagcgg aagagtggac ttgctacatg acctagcact attctctggc ccgatttatc 5760 ataccctttt tctcctgcaa atgtttctcc tcttaccttt tctctgcttt tttttcctta 5820 agcttctgta tcccctcaga gctcacaaat gcctttgaat tctttccctg acctcctgat 5880 ttttttttct tttctcaggt gttacctact aagagatgcc tggggtaagc cgcccagcta 5940 cctaattcct cagtaacatc gatctaaaat c 5971 //