Dbfetch
ID OM897001; SV 1; linear; genomic DNA; STD; HUM; 3709 BP. XX AC OM897001; XX DT 02-OCT-2022 (Rel. 144, Created) DT 03-OCT-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens isolate 20103617302 MHC class II antigen (HLA-DQB1) gene, DE HLA-DQB1*06var allele, exons 2 through 4 and partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3709 RA Kumar P., Shah S., Shah P., Chaudhary A., Thakker N.C., Kumar H., Buch H., RA Parihar D.; RT ; RL Submitted (01-MAR-2022) to the INSDC. RL Neuberg Center for Genomics Medicine, Neuberg Center for Genomics Medicine, RL 4th Floor, Kedar Building, Opp. Krupa Petrol Pump, Near Parimal Garden, RL Ahmedabad, Gujarat 380006, India XX DR MD5; 317413784b91db39ae2eb82af72ef5e6. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.23 CC Assembly Name :: HLA-DQB1 CC Coverage :: Partial CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3709 FT /organism="Homo sapiens" FT /isolate="20103617302" FT /mol_type="genomic DNA" FT /country="India" FT /tissue_type="whole blood edta" FT /db_xref="taxon:9606" FT gene <1..>3709 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06var" FT intron <1..64 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06var" FT /number=1 FT mRNA join(<65..334,2885..3166,3676..>3709) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06var" FT /product="MHC class II antigen" FT CDS join(<65..334,2885..3166,3676..>3709) FT /codon_start=3 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06var" FT /product="MHC class II antigen" FT /protein_id="UPO38352.1" FT /translation="DFVYQFKGMCYFTNGTERVRLVTRHIYNREEYARFDSDVGVYRAV FT TPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEAL FT NHHNLLVCSVTDFYPGQIKVRWFRHDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRG FT DVYTCHVEHPSLQSPITVEWRAQSESAQSKML" FT exon 65..334 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06var" FT /number=2 FT intron 335..2884 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06var" FT /number=2 FT exon 2885..3166 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06var" FT /number=3 FT intron 3167..3675 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06var" FT /number=3 FT exon 3676..>3709 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06var" FT /number=4 XX SQ Sequence 3709 BP; 959 A; 861 C; 853 G; 1036 T; 0 other; cagggcggcg gctgcggggg cggccgggct ggggcctgac tgaccggccg gtgattcccc 60 gcagaggatt tcgtgtacca gtttaagggc atgtgctact tcaccaacgg gacggagcgc 120 gtgcgtcttg taaccagaca catctataac cgagaggagt acgcgcgctt cgacagcgac 180 gtgggggtgt accgcgcggt gacgccgcag gggcggcctg atgccgagta ctggaacagc 240 cagaaggaag tcctggaggg gacccgggcg gagttggaca cggtgtgcag acacaactac 300 gaggtggcgt tccgcgggat cttgcagagg agaggtgagc gtcgtcgccc ctccgtgagg 360 cccacccttg gccgagaccc cgagtttctg tgccgggagg ggcgatgggg gcgaggtctc 420 tgaaatctga gcccagttca ttccacccca ggggaaagga ggcggcggcg gggtggtggg 480 ggcaggtgca tcggaggggc ggggacctag ggcagagcag ggggacaagc agagttggcc 540 aggctgccta gtgtcccccc cagcctcccc gtccgtcggc ctcgtcctcc gctctgcacg 600 tttctcgcct cgtgccttat gtgtttgcct cctcgtacct taccttcgct aagcagttct 660 ctctgccccc agtgcccacc ctcttcccct gcccgccggc ctcgctagca ctgccccacc 720 cagcaaggcc cacgtgcgca gcttgcgccg caggaagctt caggcttggc ctggtggagt 780 tagggctgcc ccacagctgc gcgcagggca tccagcaatt acagttgcga aataagatat 840 tttgactttt tggcttcaaa tcattattca tcgtaattct gttttcttaa atggctacca 900 ctaatggcgg agatctttga ggcgagagac tgtttaatta ttgcatgcct ggtacctgac 960 acattgactg gtatgtggtg tgagctcaat gatcttctgt taaattcatg aataaatgta 1020 ctcagctgcc aatccagtta ggttcaagaa aaaaacagag gcttacaaat gaactttatc 1080 aattattttc taacattttg cttaatgctt tcaagtaaac tcttactgac ttggatctta 1140 atagaatttg tgaatacaaa gtctgaggaa aatgtgtttg ctaaaaataa aaacaatgct 1200 tgaatgatgt tgtaaggcag agttttaatt tcttagaaaa gctgaacaaa tagcactatg 1260 caaagatcag aagtttggga ataaataggt tgaagctatt aaattattgg ataaaaatag 1320 tttcaggttg cttttggcct aggttatccc ctccccccca tcactatcca cttcaggaat 1380 aaacattctg aaagtcaatt ttacccattc aggaagcact tatttctaga cagttgcctt 1440 atcaaatacc atctatgtta tgtcatttaa tctcacagct acctgtgcat tagagattag 1500 catcaccact ttatatatcc taatattggt acatgataaa cactttaagt aatcagccca 1560 caattactca ccaagatctt aagcctccca aagtacacaa cattcttatg ttcctcacta 1620 cacatatgta gagtctaagg gatgtaaggc cttgttaaag ccagttttga ccagaagcag 1680 caatgagtct attcctgttt gttctgtgtg ttaatgcggc attgaaaatt catgattaat 1740 caatccctag tctgaccccg gtgttatcta tgcaggttca caaaactttt agtttgcttt 1800 acactccctt gccttctttt gactcacatc ctaatgccag caagtactta tatttttgct 1860 atttcagttt tatttccata aaatttattt tatcatcttt tctcataaat ttgtgccctc 1920 tatttttact cccagtctgt tgaagatgaa caaatcttat aaggccacat agctgactct 1980 gatttcagtt ggcctccagg aaggagaacc taaagaaaag ttcaagtcca agcagaaacc 2040 atgattcctt ccggatgatg gctcaagagt gccatttaat tggggtgcca cctgctgacc 2100 tcagcaaatc ccagttatat gtatatgttc acattacagg ctcattagcc caggccgacc 2160 tctgcacgga tctcagaata ttttctgtgg agaacataca cgataatgtc tgatttcaga 2220 acaagaaagt aattgtcaat agcaaggaaa tggagtaggg tagacagcta gtaattaaac 2280 tcacttgtgc gttaaaaaga aattaaggaa aaaaagaaaa tgagagaaca tattactaaa 2340 taaagaaagc acacattaaa tatttgctat agtttcacac taagagaata aaggaaatgt 2400 gataaagtgg cctaaaagga aaggatgaga tgtgtaaaag aggcggggaa agatgtgtca 2460 ttttttttta ctatgagcag caatctgaga agataaagga attgagttgt ggacaaacat 2520 gatgtttgat caagggttat ttgttttgaa ggcctgccta cttttttttc aaatattaca 2580 aacttttgaa ataacattct actttttttt caaatattac aaacttttga aataacattc 2640 tttttgtttt ttgctgtctg ttactagatt gcacattcta taaatgcagg gaccatagta 2700 tgttatttat ctttgaattc tcagtgattg tcaaatttat atttgttgaa tgaaccttaa 2760 tccaagactt cgactccagg tatctttcca ctctggtcca aggagggatc cttcctcatg 2820 gtagacgtgg tgtgtgttct cacatctcac tcctatgtct tttcctgtct gttactgccc 2880 tcagtggagc ccacagtgac catctcccca tccaggacag aggccctcaa ccaccacaac 2940 ctgctggtct gctcggtgac agatttctat ccaggccaga tcaaagtccg gtggtttcgg 3000 catgatcagg aggagacagc cggcgttgtg tccacccccc ttattaggaa tggtgactgg 3060 actttccaga tcctggtgat gctggaaatg actccccagc gtggagatgt ctacacctgc 3120 cacgtggagc accccagcct ccagagcccc atcaccgtgg agtggcgtaa ggggatattg 3180 agtttctgtt actatgggcc cacaagacaa agagctcctt ctgacccatt ccttcccatc 3240 tcttatccct gatgtcacta ctgagctggg aatcacagga gactagagca cctcttgctc 3300 catggcaagt gcatcagaag aatcctggtc tcatcacctt tccagatgct agggaaatta 3360 ctctacatac tgttgctctg aatcccagtc ctgatagctc tgagggactg attcttaggg 3420 ctggtgactg ggatcttagg gtctaaggtt atggatgagt tcttgaagag cagagatttg 3480 cttccccact ctctcaccta ttcactgtat ccaaggacct attggctggt ctttcccctc 3540 cttaggggtg gtctgaatgg agaactaggt tcctttgatg ccttcacctt ctgcacctca 3600 gactggactt caactcctca gcagggatgc tatggggtgt ggggacaaac acagacactc 3660 agttctgctc tttaggggct cagtctgaat ctgcccagag caagatgct 3709 //