Dbfetch
ID OM450915; SV 1; linear; genomic DNA; STD; HUM; 5639 BP. XX AC OM450915; XX DT 08-APR-2022 (Rel. 144, Created) DT 11-APR-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQA1) gene, HLA-DQA1*05NEW22S127 DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5639 RA Walencik A.; RT ; RL Submitted (30-JAN-2022) to the INSDC. RL Histocompatibility laboratory, Etablissement Francais du Sang Centre-Pays RL de la Loire - Nantes, 34, Bd Jean Monnet, Nantes 44000, France XX DR MD5; 82fde80cf06b72ac236ca9a37f91cc6d. XX CC ##Assembly-Data-START## CC Assembly Method :: Typestream Visual v. V1.0EFS; Omixon HLA CC Twin v. V3.1.1 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5639 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <53..>5477 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*05NEW22S127" FT mRNA join(<53..134,3954..4199,4612..4893,5323..>5477) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*05NEW22S127" FT /product="MHC class II antigen" FT CDS join(53..134,3954..4199,4612..4893,5323..5477) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*05NEW22S127" FT /product="MHC class II antigen" FT /protein_id="UOA00117.1" FT /translation="MILNKALMLGTLALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQYTHEFDGDEQFYVDLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNS FT TAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFL FT SKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCAL FT GLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL" XX SQ Sequence 5639 BP; 1653 A; 1177 C; 1232 G; 1577 T; 0 other; caattgctct acaactcaga acagcaactg ctaaggctgc cttgggaaga ggatgatcct 60 aaacaaagct ctgatgctgg ggacccttgc cctgaccact gtgatgagcc cctgtggagg 120 tgaagacatt gtgggtgagt gtatgagtga gggatgttct ctggagctgg aagagaggaa 180 attgaagcaa aagagagaaa gcgatttgca gagaaattgt agagatttcc taagggtccc 240 ttcagtatta agagatttaa aaattatggc tgttcctcct tcaggaaacc agagtcccaa 300 cctactcttt ttgttatcta tgctgttggc gttcactaag gatgctattc tgtttatatt 360 gtattcagtg actatagcct ggaggtctct atgtcattcc atcatgattg cctcaaaaat 420 tagtgaggtt tccatcaatg gataattttt tattattaaa aatttgtgaa gtatcattct 480 caaatttccc tgaacaactt ttgaagcttt tcggatgtct cctgtagtag cgcttggggt 540 aaatgattcc atcaattata tactctatag atattaagaa agatgccctt ttctttctct 600 cagacttact aacatttcca cgtgggaact ggcacaggtg gggagtgggt aaaggagtcc 660 agcaggctga atgccttcaa caatcatttt accacatggt cctcacttac tctcagctgc 720 ctcatatgtg tcacctcaca aataatcaaa taaaatgggc atgtagctaa gctttgtaaa 780 tagtgaaaac atgaatgtca attttatttt tacatatttc tattataggt atagcttcac 840 atttcttttc ttttgcaaaa taaggaatcc ttttatttta aaattgagaa tttatagtag 900 aaaaacttgg taaattaaat cattttattc tcaaattatc aacccaaatt acctgttctt 960 caactcatct aatgaagtcc tataaaaaga aaagtgggcc agacatggtg gctcatgcct 1020 gtaatcccag cactttggga ggccgaggca ggaggatcct ttgagcccag gagttgagac 1080 cagcctgggc aacatagcaa gacctcatct ctacaaaaaa taaaaattag ccaggtgtgg 1140 tggtgcatgc ctgtggtgcc agctactcag aaggctgcag tgggaggact gcttgagtcc 1200 aggaggcgga agctgcagtg agccatgatg gcaccactac actccagcca gggcaacaga 1260 gagaaactct gtctcagaaa gaaaaaggaa agaaagagag aaaggaagga aagaaagaaa 1320 gaaggaagga aggaaggaag aaggggaagg gaagggaagg aagggaagga aagggaaggg 1380 aggaaagaag gaaggaaaaa agaaaaagaa agaaaaaaga aagaaaaaga aagaaagaaa 1440 gaaaagaggg aaggaaagaa agaaaaagga aggaaggaag cacagattaa ttattaatca 1500 tttggtctct cttagtcttc tctgtctttg tcatccatct atttccacct ctcttcatgc 1560 attcctttct ccctcttccc tttcaggatc catctctgac tccctgcttc tttatatgga 1620 cagtggggtt tgtaaaacaa aagttgaaaa atcagatagt taaaaggtga agtgaactgg 1680 aaggtctaaa cttccacaac cttattaacc atggctgctc ccattctgat tttgttcgac 1740 ggtggaagtt tcacctcctt ctccagagca cttggcttct ttgttccaaa tttcctttct 1800 tcaacctcac accagagtgc cctggtcagg ctcggctcat ccattaggca caacatgggc 1860 aatgcagaga accctccata ctgtaaagcc acatgagaat gttttaactc cttttaagat 1920 tagaaaaaaa tgaaatttca gagcctaaga aaatgtttta attcagccta gattgtattg 1980 tctttatacc aattcagtca taaaatacaa ttttccatat tttcatggag gaaggggccc 2040 acaaaagcaa gagtgctcag ggctcacatg tcagaatgca gccctggtca tggctgatcc 2100 tggccttctt atgattctgc tagtgtgcct gtccgtcttc cccaaaatct atgtcgtcct 2160 caaatatagc aactgtaatt caaaacacgt ttgagcacac agtaagctaa gttttaagga 2220 ttcaaagatg aaaagtcatg ctgtcttccc tgcagagggt gctcagacta gtgatggaaa 2280 cggtatggga tgcaggaaag cagaaggcca ttgctgacca gggcagtgga ctcagcagag 2340 gctgaaacta tacaaatgac ttggttccag ctgggccagc agggtgacat cctccagcaa 2400 aactcggcac ccaagacaag tcccagatga aaagaaggat tgctttgtgt ttgataagga 2460 gtcaaggttt attgcaagga taaggctttg ttggtggcct gttaagacaa tccagggcag 2520 tcatactgga taaggaagaa ggtgagctgg aagaggaaca gacaaacagc cagatattga 2580 ggtggaggag ctggaggtca taacgtggtc aaaaacatgt cgatgagagg acttagctac 2640 aaagttgtta acttaagcag aaacctcaag gatgaatttt aggatttctc caggaagtcc 2700 taaaagataa tttcatttca gggagaaaaa caacaaacca ctggaaagac cagggaacat 2760 gaaaggataa tgtagtttgg tttgcttggc agatacttat gaaggatgtt ggactgtaag 2820 gctgttgata gcctcctcac agaacatgct acagtacatt gtatctgctc ccttacctac 2880 ctgactcttc cactcttcag tttgttcctt aatggtagac catgcctgat tggtgtttta 2940 cacatcccct gctatgtctg acacttgtgg atgctcagaa agtggggaag gaaggaaaga 3000 tacaacggta aaaggcttac acgtcttgac aggaatgtcc agttcggctc atttggctgg 3060 agccacattg cacggctgcc attctgctct ggcatcctca gacaagcaca ctgcccatta 3120 gaggaaaaag ggtttaattt acctgagtcc tcaagtgaat ataagtgtta agtcagaaca 3180 ctgtagacat ttagtaacct ccttcagagg aaaaaaaaag gtggggggaa atgacagaaa 3240 tccaaaaact agtagagctt ccactcttca tttcagaaga aatcagttgc tctcctctaa 3300 ggaccattac tattaacaaa acagagacct tgaaggaggc attgtttatt tattatatat 3360 tttgtaatgt tattaccatt cttgttatac tattccttat accctacaat tgttagcaga 3420 cattatttta aattaataag atcctgcatg cttttctttt tttaaaaaaa agaaagacct 3480 ctgtgtagag tgtcctgttc tgagccagtc ctgagaggaa agaaaataca atcagtttgt 3540 tattaactga ggaaagaatt aagtgaaaga tgaatcttag gaagcagaag gaagtaaacc 3600 taatctctga ctaagaaagc taaataccat aataactcat tcattccttc ttttgtttaa 3660 ttacattatt taatcataag tccgtgatgt gccaggcact caggaaatag taaaaactgg 3720 acatgtgata ttctgccctt gtgtagcgca cattatagtg ggaaagaaag cgcaatttta 3780 accggacaac taccaacaat aagagcggag gaagcagggg ttggaaatgt ccacaggctg 3840 tgccaaagat gaagcccgta atatttgaaa gtcagtttct ttcatcattt tgtgtattaa 3900 ggttctttct tcccctgttc tccaccttcc tgcttgtcat cttcactcat cagctgacca 3960 cgtcgcctct tatggtgtaa acttgtacca gtcttacggt ccctctggcc agtacaccca 4020 tgaatttgat ggagatgagc agttctacgt ggacctgggg aggaaggaga ctgtctggtg 4080 tttgcctgtt ctcagacaat ttagatttga cccgcaattt gcactgacaa acatcgctgt 4140 cctaaaacat aacttgaaca gtctgattaa acgctccaac tctaccgctg ctaccaatgg 4200 tatgtgtcaa caattctgcc cctctttact gatttatccc ttcataccaa gtttcattat 4260 tttatttcca agaggtcccc agatcttctc atggcaattg ctgaaatttt atcatctccc 4320 atctctaaaa tcacatattc ccatgtaata caagggtctt tccattatcc attcattaaa 4380 tccttctcgg agaggtctca tcaacctcct actttattaa acatgcccac agagagaagg 4440 gcacaggaat aaagcggagg caatgtgtcg ttgctcccaa gcagaaggta aataagacct 4500 ctttgactat caggtggtga aatgctggta ggagggctct tccaggatgt aatgcagaag 4560 ctcatggcag agctattcac acttcacatc agtgctgttt cctcaccaca gaggttcctg 4620 aggtcacagt gttttccaag tctcccgtga cactgggtca gcccaacatc ctcatctgtc 4680 ttgtggacaa catctttcct cctgtggtca acatcacatg gctgagcaat gggcactcag 4740 tcacagaagg tgtttctgag accagcttcc tctccaagag tgatcattcc ttcttcaaga 4800 tcagttacct caccctcctc ccttctgctg aggagagtta tgactgcaag gtggagcact 4860 ggggactgga caagcctctt ctgaaacact ggggtaagga tgagttccac cactttttga 4920 tgctttcttg tctgtcaagt tcagaacttc ctgcctttta ctcctatatc ccaaaacttg 4980 ttttccacac ttcatgggtt tctttctttc tttctttctt tctttctttc tttctttctt 5040 tctttctttc tttctttctt tctttctttc tttctttttt gaaagaataa agcaacaaaa 5100 gcaaagattt attgaaaatg aaagtacact tcacatggtg ggagcgggcc tgagcatagg 5160 ggctcaagag ccacttcatg ggtttctaat gatagacttc actctcctcc ctaagctggg 5220 gaccttgagt ctttgcagag ccaaccctcc accccatccc atcccacaca catgcacatg 5280 agcacactct gctttctgac ctcaacgact tcatatccac agagcctgag attccagccc 5340 ctatgtcaga gctcacagag actgtggtct gcgccctggg gttgtctgtg ggcctcgtgg 5400 gcattgtggt gggcactgtc ttcatcatcc gaggcctgcg ttcagttggt gcttccagac 5460 accaagggcc cttgtgaatc ccatcctgga atggaaggta agattgagat ttgttagagc 5520 tgaatccgca gtatgagagg aaggaaagtg gaggaggctg tggacatgaa tggttgaaag 5580 ttgtagggga attgggaagt ggcatgatga tgacatagga gcggcctagg acccatcca 5639 //