Dbfetch
ID OM327777; SV 1; linear; genomic DNA; STD; HUM; 6500 BP. XX AC OM327777; XX DT 08-APR-2022 (Rel. 144, Created) DT 11-APR-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQB1) gene, HLA-DQB1*03NEW212108148 DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6500 RA Walencik A.; RT ; RL Submitted (19-JAN-2022) to the INSDC. RL Histocompatibility laboratory, Etablissement Francais du Sang Centre-Pays RL de la Loire - Nantes, 34, Bd Jean Monnet, Nantes 44000, France XX DR MD5; a118c35aa9b615a1e32de7a99f7b4350. XX CC ##Assembly-Data-START## CC Assembly Method :: Typestream Visual v. V1.0EFS; Omixon HLA CC Twin v. V3.1.1 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6500 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>6500 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW212108148" FT mRNA join(<1..109,1558..1827,4457..4738,5256..5366,6487..>6500) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW212108148" FT /product="MHC class II antigen" FT CDS join(1..109,1558..1827,4457..4738,5256..5366,6487..6500) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03NEW212108148" FT /product="MHC class II antigen" FT /protein_id="UOA00121.1" FT /translation="MSWKKALRIPGGLRAATVTLMLAMLSTPVAEGRDSPEDFVYQFKA FT MCYFTNGTERVRYVTRYIYNREEYARFDSDVEVYRAVTPLGPPDAEYWNSQKEVLERTR FT AELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW FT FRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQHGDVYTFHVEHPSLQNPITVEWRA FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGLLH" XX SQ Sequence 6500 BP; 1664 A; 1493 C; 1587 G; 1756 T; 0 other; atgtcttgga aaaaggcttt gcggatcccc ggaggccttc gggcagcaac tgttaccttg 60 atgctggcga tgctgagcac cccagtggct gagggcagag actctcccgg taagtgcagg 120 gcagctgctc tccagagccg ccactctggg aacagactct ccttgggctg gggtatgggg 180 atggtgatct cgattatctc agacacaatc tttatcaata tttcctctgt tttgggaaag 240 agagctatgt tgcattccca tttatctttt aatgatgagg tgaggacaat ccaatcccat 300 cctacagact taagcctgga agaggagaga ggagagaaaa gaggagacaa agtgttcatt 360 tactaccagt gataggacaa agtgagcatg gggttatttt tgaagatatg aatttctcca 420 aagacacagc atgatttgtc atttaggcgt gccccaagac tgcctggact aactattatg 480 agatcctgca ctgggaaatg taaggcagca atggtgtctg tagtccccgt atttggggaa 540 aaggtgtctg tattcctgac tcagtggagc gtttgtggag gcaaaatctt ggtactgagg 600 gaagctgact ggctgaccac agacagggag tcttcaggtt tcactgattt atgggcaaat 660 ggtgacctga gtgggattca gagacccgag ttgatggtgg actaaattta gtagaaagga 720 ggatgtaaag aagagaaatt atacatactg tgaaaccact catttcagac acagaacaat 780 actttacata aattctctct cactccttct aacatcctgt gtgtagatat catgattttc 840 ttttacacaa ttatacttgt gacatggata ttctgttacg taacctgccc gagctggtga 900 ctgccacagt ttaatgggat tctagtttat caaattcaaa agcttgtgct ctttcagtga 960 ataaacgttt ctttctagga ctcagagatc taggactccc ttctttctaa cacagaagtg 1020 agtgaacctc acagggcact tgggagggta aatccaggca tgggaaggaa ggtattttac 1080 ccagggacca agagaatagg catatcaaaa gaggacaggt ttaattcctg gacctgtctc 1140 gtcattccct tgaactctca ggtttatgtg gataacttta tctctgaggt acccaggagc 1200 tccatggaaa atgggatttc atgcgagaac gccctgatcc ctctaagtgc agaggtccat 1260 gcaaaatcaa cccgactgcc tcttcgcttg gttcacaggc ccagccagac agggacaggg 1320 ctttcctccc tttcctgcct gtaggaaggc ggattcccga agacccccga gagggcgggc 1380 agggctgggc agagcccccg ggaggatccc aggtctgcag cgcgaggcac gggccggcgg 1440 gaactggagg tcgcgcgggc ggttccacag ctccgggccg ggtcagggcg gcggctgcgg 1500 ggtggccggg ctggggccgg gccggggccg gactgaccgg ccggtgattc cccgcagagg 1560 atttcgtgta ccagtttaag gccatgtgct acttcaccaa cgggacggag cgcgtgcgtt 1620 atgtgaccag atacatctat aaccgagagg agtacgcacg cttcgacagc gacgtggagg 1680 tgtaccgggc ggtgacgccg ctggggccgc ctgacgccga gtactggaac agccagaagg 1740 aagtcctgga gaggacccgg gcggagttgg acacggtgtg cagacacaac taccagttgg 1800 agctccgcac gaccttgcag cggcgaggtg agcgtcgtcg ccccgctgcg aggcccactc 1860 ttggccgggg ccccgagtct ctgcgctagg agggacgagg ggggcgaagc ctctggaacc 1920 tgagccgcgt tcgttccacc ccaggggaca ggagttggcg gcgtgggtgg tggggcaggt 1980 gcataggagg ggcagggacc taggggcaga gcaggggtac aggtagagtt ggtcaaactg 2040 cctagttttg ccccagcctt cccgtccgtc agcctcgccc tctgctgtgc acgttctcgc 2100 ctcgtgcctt atgcgtttgc ctcctcgtgc cttgcctttg ctaagcagtc ctctctgccc 2160 ccaatttctg ccctcttccc ctgcccgccc gccccgctag cactgcccca cccagcaagg 2220 tccacgtgca ctgctcgcgc cgcaggaagc ttcaggcttg gcctggtgga gttagggctg 2280 ctccacaact gtgcgcaggg catccagcaa ttacagttgt gaaataagat attttgactt 2340 ttggcttcaa attattattc atcgtaattc cgttttctta aatggctctc attcatggcg 2400 gagctctttg aggtgagagt gttttaatca ttttatggcc ggtacctgac acattgactg 2460 gcatgtggta taagctcaat aatcttctgt taaattaatg aataaatgtg ctcagctgcc 2520 aatccactta ggctcaagaa aaaccagagg taaacagaac cttaaaaatg gacttttatt 2580 aattattttc tatcattttg cttaattctt taaagtaaac tcttattgac ttggatctaa 2640 atagtttgtg aatacaaagt ctgaggaaaa aagtgtttgc taaaaataaa aacaacactt 2700 gaatgatgtt tgtaaggcag ttttaatttc ttagaaaagc tgaacaaatg gcacaatgca 2760 aagagcagaa gttttggaat aaatagattg aagccattaa attattggat aaaaatagtt 2820 tcaggttgct tttggcctag gttctcccct ccccccatca ctatccactt caggaataaa 2880 cattctgaaa gttaatttta cccatatagt gagcacttat ttctaagttg ccttatcaaa 2940 taccatctat gttatgtcat ttaatctcgc agttgcctgt gcattagaga ttagcatcac 3000 cactttatat atcctaatat tagtacatga taaacacttt aagtaatcag cccacaagta 3060 ctcaccaaga ccttaagcct cccaaagtac acaacattct tacgttcctc actacacatc 3120 tgtagagtca aagggacata aagccttgtt aaagccagtt ttgaccagaa gcagcaatgg 3180 tctcttcctg tttgatctcc atgttaatgg gacaaaatga tactttcaag gcattgaaaa 3240 tttatgatta atcaatcaaa tttatgatta atcaatccct agtctgactc cagtgagatt 3300 cacaaaactt tcagtttact ttatactccc ttgccttctt ttgactcaca tcatagtgcc 3360 agcaagtact tatatttttg ctatttcagt tctatttcca taaaatttat tttatcatct 3420 tttctcataa atttgtgccc tctattttta ctcccaatct gtgtaagatg aacaaatctt 3480 ataagaccac atagctgact gtgatttcag gtggactcca ggaaggagaa ccaaagaaaa 3540 ctttcagtct ttttaagatg aacaaatctt gtaagtcccc acatagctga ctgtgatttc 3600 aggtggactc caggaaggag aaccaaagaa aagttcaagt ccaagcagaa accgtgattc 3660 cttccggatg atggctcatg agtgccattt aattggggtg ccacctgctg tcctcagcaa 3720 atcccagcta tatgtatatg ttcgcattac aggctcatta acctaggctg acctctgcaa 3780 ggatctcaga atattttcta cagagaacat acatgataat atctgatttt aggacaaaaa 3840 agtaattctc aatagcaagg gaatggagta gggtagacag ctagtaatta aactcacttg 3900 tgtgttaaaa ataaattaag gaaaaaagaa aatgagagaa catattacta aataaagaaa 3960 gcatacatta aatatttact atagttttac actaagagaa taaaggaaat gcaataaagt 4020 ggcctgaaag gtaaaggatg agatgtgtaa aagaggcggg gaaagatgtg tcattttttt 4080 tttactatga gcagcaatct gagaagataa aggaatcgag ttatgggcag acatgatgtt 4140 tgatcagtgt tatttgtttt caaggcctgc ctactttttt ttcaaatatt acaaactttt 4200 gaagtcacat tctttttgtt ttttgctgtc tgttactaga tcgcacattc tgtaaaggca 4260 gggaccatgg tatgttgttt atctttggat tctcagtgat tgtcatattt atgtttgttg 4320 aatgaatctt aatccaagac ttgggctcca ggtatctttc cattctggtt ccaaggaggg 4380 accttcctca cagcaggcgt gctgtgtggt ctcacatctc actcctatat ctttccctgt 4440 ctgttactgc cctcagtgga gcccacagtg accatctccc catccaggac agaggccctc 4500 aaccaccaca acctgctggt ctgctcagtg acagatttct atccagccca gatcaaagtc 4560 cggtggtttc ggaatgacca ggaggagaca accggcgttg tgtccacccc ccttattagg 4620 aacggtgact ggaccttcca gatcctggtg atgctggaaa tgactcccca gcatggagac 4680 gtctacacct ttcacgtgga gcaccccagc ctccagaacc ccatcaccgt ggagtggcgt 4740 aaggggatat tgagtttctg ttactatggg ccccacaaga caaagggcag agctcattct 4800 gacccatccc ttcccatctc ttatccctga tgtcactact gagctgggaa tcacaggaga 4860 ctagagcact tcttcctcca tggcaagtgc atcagaagaa tcctgatctc atcacctttc 4920 cagatgctag ggaaattact ctacatactg tttctctgga tcccagtcct gatagctcgg 4980 agggactgat cattagggct ggtgactggg atcttagggt ttaaggttat ggatgagctc 5040 ctgaggagtg gagatctgct tctccactct ctcacctact cactgtaccc aaggacctat 5100 tggctggcct ttcccctccc ttaggggtgg tctgaatgga ggactagttt cctttgacgc 5160 cttcacctcc tgaatctcag actggacttc agctcctcag cagggatgct atggggtgtg 5220 gggacaaaca ctgacactca ggctctgctt cttaggggct cagtctgaat ctgcccagag 5280 caagatgctg agtggcattg gaggcttcgt gctggggctc atcttcctcg ggctgggcct 5340 tattatccat cacaggagtc agaaaggtga ggaaccccaa gggaaaaggg gaagatgggc 5400 tgtgacccag accctctgtt cagagaggtc ctgtctctag atgtggctct ttcctcctga 5460 ccccgagagg aagaaagctg agctggaggt gggaggagac aggacaagat tggaggaggc 5520 attggaatct gattttacta gttgaaaggt agccctgtca cacagctcac tgatagagct 5580 tattgaagga catccttacc tttcatcatt gtctcattgg ctcctttcca aaagcttcct 5640 ccattaagag ggtcagagcc ttggcctcct tgccttctag tgacaatttc ctttgtttta 5700 ggggatttta aattagggtg cttaaggcct tgaaggacat gggtgggaag agaatataac 5760 tctaattaag tcacatgtgt cattttccat tggggtgaga gagtggctgt ttgtgtaatg 5820 agacctttct ctgcataact tccttttgta agacctcaag ggcctccacc agcaggtaat 5880 atttcagccg tgatccagtg tggggagggc acagatgtaa gagggaagag catgagctga 5940 gtgtacctga ccacagtggt ctccgttcat ggtatatttg ctgctatgag gatcaagact 6000 taggggcgaa gtttgccagt ttctaggaat ctccagaggc tgttccccag aaccaagcct 6060 taactttggt ggcatcttcc tgtgaaatgt gaagccagaa ccacagctta aatgttagac 6120 actaggatga tgcccacttt gtgccacatg ttggtggcta ctgcctgtag gcattttcca 6180 gtgactgaaa gaggctgcta gtggtaggga tgaggtatca tccaatttcc taaaaagacc 6240 gaacccttca tattccccag aagagtaaca gctgttcccc cacctccctc acatctgcat 6300 caagctgaag ttctgtgtct tcatgagctg atttcacctt tgcacagatc ttgggggagg 6360 tgatgacaat acactctgga cctcagcttt gtctgtctga agctgcaggg ggcccctgag 6420 gggtggggga gatggcaggc ccaccagcgt accctgtgct gatcatccct cttctctctt 6480 ctccagggct cctgcactga 6500 //