Dbfetch
ID OL639222; SV 1; linear; genomic DNA; STD; HUM; 5359 BP. XX AC OL639222; XX DT 15-NOV-2022 (Rel. 144, Created) DT 16-NOV-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class II DR beta chain (HLA-DRB1) gene, HLA-DRB1*13:46var DE allele, exons 2 through 6 and partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5359 RA Kwok J.S.Y., Cheung S.K.F., Ho J.C.Y., Chan Y.; RT ; RL Submitted (22-NOV-2021) to the INSDC. RL Division of Transplantation and Immunogenetics, Department of Pathology, RL Queen Mary Hospital, 102 Pokfulam Road, Pokfulam, Hong Kong HKG, China XX DR MD5; aa751473748a8368e219aedf8676cf6b. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.22.0; TypeStream Visual v. CC 2.1.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5359 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>5359 FT /gene="HLA-DRB1" FT /allele="HLA-DRB1*13:46var" FT /note="c.286T>A" FT mRNA join(<276..545,2798..3079,3778..3888,4364..4387, FT 5176..>5359) FT /gene="HLA-DRB1" FT /allele="HLA-DRB1*13:46var" FT /product="MHC class II DR beta chain" FT CDS join(<276..545,2798..3079,3778..3888,4364..4387,5176..5189) FT /codon_start=3 FT /gene="HLA-DRB1" FT /allele="HLA-DRB1*13:46var" FT /product="MHC class II DR beta chain" FT /protein_id="UZC80144.1" FT /translation="RFLEYSTSECHFFNGTERVRFLDRYFYNQEEYVRFDSDVGEFRAV FT TELGRPVAEYWNSQKDILEDRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVYPSKTQPL FT QHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSG FT EVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGH FT SGLQPRGFLS" FT exon 276..545 FT /gene="HLA-DRB1" FT /allele="HLA-DRB1*13:46var" FT /number=2 FT exon 2798..3079 FT /gene="HLA-DRB1" FT /allele="HLA-DRB1*13:46var" FT /number=3 FT exon 3778..3888 FT /gene="HLA-DRB1" FT /allele="HLA-DRB1*13:46var" FT /number=4 FT exon 4364..4387 FT /gene="HLA-DRB1" FT /allele="HLA-DRB1*13:46var" FT /number=5 FT exon 5176..>5359 FT /gene="HLA-DRB1" FT /allele="HLA-DRB1*13:46var" FT /number=6 FT 3'UTR 5190..>5359 FT /gene="HLA-DRB1" FT /allele="HLA-DRB1*13:46var" XX SQ Sequence 5359 BP; 1319 A; 1116 C; 1339 G; 1585 T; 0 other; cctgcttgga ggtctccaga acaggctgga ggtagggagg ggggtcccaa aagcctgggg 60 atcagacgtg gttttcccgc ctggtccccc aggccccctt tcgcctcagg aagacagagg 120 aggagcccct gggctgcagg tggtgggcgt tgcggcgggg gccggttaag gttcccagtg 180 cccgcacccg gcccagggag ccccggatgg cggcgtcact gtcagtgtct tctcaggagg 240 ccgcctgtgt gactggatcg ttcgtgtccc cacagcacgt ttcttggagt actctacgtc 300 tgagtgtcat ttcttcaatg ggacggagcg ggtgcggttc ctggacagat acttctataa 360 ccaagaggag tacgtgcgct tcgacagcga cgtgggggag ttccgggcgg tgacggagct 420 ggggcggcct gtcgccgagt actggaacag ccagaaggac atcctggaag acaggcgggc 480 cgcggtggac acctactgca gacacaacta cggggttggt gagagcttca cagtgcagcg 540 gcgaggtgag cgcggcgcgg ggcggggcct gagtccctgt gagctgggaa tctgagtgtg 600 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgagagagag 660 acagagagac agagagagag agagcgccat ctgtgagcat ttagaatcct ctctatcctg 720 agcaaggagt tctgagggca caggtgtgtg tgtagagtgt ggatttgtct gtgtctgtga 780 ggctgttgtg ggaggggagg caggaggggg ctgcttctta ttcttggagg actctgtggg 840 gaggtgacaa gggaggtggg tgcgggcggc tggagagaga ggtgaccttg attgtctcgg 900 gtccttagag atgcagggaa gggaaatgta aggggtgtgt ggttggggtg aaggtttagg 960 ggaggagagc tgaggggtaa ggaaggtttg ggataatgtg aggaggccag ttccagactg 1020 tccctggcac acacccttca tgtaatctct gaaataaaag tgtgtgctgt ttgtttgtaa 1080 aagcattaga ttaatttcta ggggaattga ggagacctct gaggcatctc tgaagcttct 1140 ttaggtctaa atttcttgct agttttttgt tttttattgt gtatattttt acatagtaga 1200 aatgactgtg aaactaactt tttgaattaa agttttaaca cagttactat tttattataa 1260 tgctaatagt tttctagtag ttacatatta ttcttttata tataatagtt gtgacacaac 1320 ttacctcact ttcccctttg ttgaccttta ttatgacatt caccaaaatt tgaaaatgta 1380 tgtttctggt taatttttaa tttatatttt tttcatttat aattcttttg aattattttg 1440 acctatttat tggccagttt taataactgc tgtaagaatt ccctattgta tttggtaggg 1500 aatggacaat gatctactgc ctaatatctc gagggcttag tatttttctc agtgactttg 1560 tgggttcttt gtactgtgag attattaaca ctttattgat atttgattca gcatttgctc 1620 cagtttgtgg tttgtatgtt gattttgaaa attcttttcc atgttaagaa tttgaacatt 1680 tttatataat aaaatatgtt gcaaaatttt tattaatgat ttacaatcca tcttaaatct 1740 gccattttgt ggtattgttg tctccaggtt tctccttact tctaaaaaaa attgcattta 1800 ttgagagtct gctagtgtta gggattttcc tgggcataag caccccaagt gacgagtccc 1860 agacactgcc ttaatccaaa tgtgattctg gaaagaaaaa tcattttaca atgataggcc 1920 taataataat taagcttgtg ttgcatggga gatgcattga tcagctaaat gtaaatataa 1980 gaactttcaa aactaaaatg acgttcctta atccttctct ctgctttatg actcatgctt 2040 ttctgggaaa gtaaaaattt ggagaatcat ttctgtctgt cccaccttcc caggggcaga 2100 accatttctg tggtgttcta aggtgtgagt gcatggcggt agtattccta aaaattcata 2160 ttcggtttcg tcatgtaccc aactctgtcc cgttatctat caacattgtt ttaaatcata 2220 tatttctgtc aaggtgtaca aggatgataa ataggtgcca agtggagcac ccaagtgtga 2280 tgagccccct cacagtggaa tggagtgtga agctttatga cctcataaat tgaaggttat 2340 cttcagtcat tgttttatat attttacatg cattaatcct catataatcc caagaggtaa 2400 attagtataa ttatccttca ttataggtga caaagttgag acacagaaga atcgaactct 2460 taaggcagac cttggatttg aaccaggcaa cctggctcag atatcagttt taattactac 2520 actctgtact ttcaaagatt tgtaaacact ttgacaatgc atgacaattt caagctatga 2580 agaaacaaac acaatttttc acaatatctc tcaaatctaa taggtcctca ctatcaagat 2640 taagttccag gctgatgaca ctgtaaggcc acatggccag ctgtgctgga ggcctggtca 2700 aggtcagagc ctgggtttgc agagaagcag acaaacagcc aaacaaggag acttactctg 2760 tcttcatgac tcattccctc tacctttttt ctcctagtcc atcctaaggt gactgtgtat 2820 ccttcaaaga cccagcccct gcagcaccac aacctcctgg tctgttctgt gagtggtttc 2880 tatccaggca gcattgaagt caggtggttc cggaatggcc aggaagagaa gactggggtg 2940 gtgtccacag gcctgatcca caatggagac tggaccttcc agaccctggt gatgctggaa 3000 acagttcctc ggagtggaga ggtttacacc tgccaagtgg agcacccaag cgtgacaagc 3060 cctctcacag tggaatggag tgagcagctt tctgacttca taaatttctc acccaccaag 3120 aaggggactg tgctcatccc tgagtgtcag gtttctcctc tccgacatcc tattttcatt 3180 tgctccatgt tctcatctcc atcagcacag gtcactgggg gtagccctgt aggtgtttct 3240 agaaacacct gtacctcctg gagaagcagt ctcgcctgcc aggcaggaga ggctgtccct 3300 cttttgaacc tccccatgat gtcacaggtc agggtcaccc accctccccg ggctccaggc 3360 actgcctctg ggtctgagac tgagtttctg gtgctgttga tctgagttat ttgttgtgat 3420 ctgggaagag gagaagtgta ggggccttcc tgacatgagg ggagtccaat ctcagctctg 3480 ccttttatta gctctgtcac tctagacaaa ctacttagcc tcattgagtc tcaggctttc 3540 tgtggatcag atgttgaact cttgccttac atcaaggctg taatatttga atgagtttga 3600 tgtctgaacc ttgtaactgt tcagtgtgat ttgaaatcct ttttttctcc agaaatggct 3660 agttatttta gttcttgtgg ggcagacttc ttccccattt tcaaagctct gaatcttaga 3720 gtctcaatta aagaggttca atttggaata aacactaaac ctggcttcct ctctcaggag 3780 cacggtctga atctgcacag agcaagatgc tgagtggagt cgggggcttt gtgctgggcc 3840 tgctcttcct tggggccggg ctgttcatct acttcaggaa tcagaaaggt gaggagcctt 3900 tggtagctgg ctctctccat aggcttttct ggaggaggaa ctatggcttt gctgaggtta 3960 gttctcagta tatgagtggc cctgaataaa gcctttcttt ccccaaacgg ctctaatgtc 4020 ctgctaatcc agaaatcatc agtgcatggt tactatgtga aagcataata gcttgtggcc 4080 tgcagagaca agaggaaggt taacaagtag gggtcctttg gtttgagatc ttggagcaga 4140 ttaaggaaga gccactaaga ctaatggaat tacactggat cctgtgacag acacttcacc 4200 cttcatgggt cacatggtct gtttctgctc ctctctgccc tggctggtgt gggttgtagt 4260 gacagagaac tctccggtgg gagatctggg gctgggacat tgtgttggaa gacagatttg 4320 cttccataaa ttttaagtgt atatattttc ctctttttcc caggacactc tggacttcag 4380 ccaagaggta atacctttta atcctctttt agaaacagat acggtttccc tagtgagagg 4440 tgaagccagc tggacttctg ggtcgggtag ggacttgcag aactttcctg tcttaggaga 4500 ggtttctaaa tgcaccaatc agtgctctgt aaaaacacac caattggcac tctgtggcta 4560 gatagatgtt tgtaaaatgg actaatcagc actctgtaaa atggagcaat ccacactctg 4620 taaaatggac caatcaatgc tctttaaaat ggaccaatca gcaggacatg ggcggggaca 4680 aataagggaa tacaagctgg ccaccccagc cagcagcagc aacccgctca ggtcgccttc 4740 catgctgtgg aagctttgtt cttttgctct tcacaataaa tcttgctgtt gctcactctt 4800 cgggtctgtg ccacctttaa gagctgtaac actcactgtg aagattcgcg gcttcattct 4860 tgaagtcagc gaaaccacga acccaccgga aggaacaaac tctggacaca ctagaattga 4920 tggtagaggt gataaggcat gagacagaaa taataggaaa gactttggat ccaaatttct 4980 gatcaggcaa tttacaccaa aactcctcct ctccacttag aaaaggcctg tgctctgtgg 5040 gactattggc tctgggagac tcaggaactt gtttttcttc ttcctgcagt gctctcatct 5100 gagtccctga aagagaggaa aagaaactgt tagtagagtc aggttgaaaa caacactctc 5160 ctctgtcttt tgcaggattc ctgagctgaa gtgcagatga cacattcaaa gaagaacttt 5220 ctgccccagc tttgcaggat gaaaagcttt ccctcctggc tgttattctt ccacaagaga 5280 gggctttctc aggacctggt tgctactggt tcagcaactg cagaaaatgt cctcccttgt 5340 ggcttcctca gctcctgtt 5359 //