Dbfetch
ID OL639211; SV 1; linear; genomic DNA; STD; HUM; 4218 BP. XX AC OL639211; XX DT 15-NOV-2022 (Rel. 144, Created) DT 16-NOV-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens truncated MHC class I protein (HLA-C) gene, HLA-C*08:01var DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4218 RA Kwok J.S.Y., Cheung S.K.F., Ho J.C.Y., Chan Y.; RT ; RL Submitted (22-NOV-2021) to the INSDC. RL Division of Transplantation and Immunogenetics, Department of Pathology, RL Queen Mary Hospital, 102 Pokfulam Road, Pokfulam, Hong Kong HKG, China XX DR MD5; 704241c56d7fdf7fb902ed0f1d6029dd. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.22.0; TypeStream Visual v. CC 2.1.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4218 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>4218 FT /gene="HLA-C" FT /allele="HLA-C*08:01var" FT /note="c.1092T>A" FT mRNA join(<1..568,699..968,1215..1490,2078..2353,2475..2594, FT 3034..3066,3174..3221,3386..>4218) FT /gene="HLA-C" FT /allele="HLA-C*08:01var" FT /product="truncated MHC class I protein" FT exon <1..568 FT /gene="HLA-C" FT /allele="HLA-C*08:01var" FT /number=1 FT 5'UTR <1..495 FT /gene="HLA-C" FT /allele="HLA-C*08:01var" FT CDS join(496..568,699..968,1215..1490,2078..2353,2475..2594, FT 3034..3066,3174..3217) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*08:01var" FT /product="truncated MHC class I protein" FT /protein_id="UZC80133.1" FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPR FT FIAVGYVDDTQFVQFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRN FT LRGYYNQSEAGSHTLQRMYGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAARTAEQLRAYLEGTCVEWLRRYLENGKKTLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWGPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIA" FT exon 699..968 FT /gene="HLA-C" FT /allele="HLA-C*08:01var" FT /number=2 FT exon 1215..1490 FT /gene="HLA-C" FT /allele="HLA-C*08:01var" FT /number=3 FT exon 2078..2353 FT /gene="HLA-C" FT /allele="HLA-C*08:01var" FT /number=4 FT exon 2475..2594 FT /gene="HLA-C" FT /allele="HLA-C*08:01var" FT /number=5 FT exon 3034..3066 FT /gene="HLA-C" FT /allele="HLA-C*08:01var" FT /number=6 FT exon 3174..3221 FT /gene="HLA-C" FT /allele="HLA-C*08:01var" FT /number=7 FT exon 3386..>4218 FT /gene="HLA-C" FT /allele="HLA-C*08:01var" FT /number=8 FT 3'UTR 3391..>4218 FT /gene="HLA-C" FT /allele="HLA-C*08:01var" XX SQ Sequence 4218 BP; 817 A; 1195 C; 1267 G; 939 T; 0 other; ttattttgct ggatgtagtt taatattacc tgaggtaagg taaggcaaag agtgggaggc 60 agggagtcca gttcagggac ggggattcca ggagaagtga aggggaaggg gctgggcgca 120 gcctgggggt ctctccctgg tttccacaga cagatccttg gccaggactc aggcacacag 180 tgtgacaaag atgcttggtg taggagaaga gggatcagga cgaagtccca ggtcccgggc 240 ggggctctca gggtctcagg ctccaagggc cgtgtctgca ctggggaggc gccgcgttga 300 ggattctcca ctcccctgag tttcacttct tcttccaacc tgcgtcgggt ccttcttcct 360 gaatactcat gacgcgtccc caattcccac tcccattggg tgtcgggttc tagagaagcc 420 aatcagcgtc tccgcagtcc cggttctaaa gtccccagtc acccacccgg actcggattc 480 tccccagacg ccgagatgcg ggtcatggcg ccccgaaccc tcatcctgct gctctcggga 540 gccctggccc tgaccgagac ctgggcctgt gagtgcgagg ttgggaggga aacggcctct 600 gcggagagga gcgaggggcc cgcccggcga gggcgcagga cccggggagc cgcgcaggga 660 ggagggtcgg gcgggtctca gcccctcctc gcccccaggc tcccactcca tgaggtattt 720 ctacaccgcc gtgtcccggc ccggccgcgg agagccccgc ttcatcgcag tgggctacgt 780 ggacgacacg cagttcgtgc agttcgacag cgacgccgcg agtccaagag gggagccgcg 840 ggcgccgtgg gtggagcagg aggggccgga gtattgggac cgggagacac agaagtacaa 900 gcgccaggca cagactgacc gagtgagcct gcggaacctg cgcggctact acaaccagag 960 cgaggccggt gagtgacccc ggcccggggc gcaggtcccg acccctcccc atcccccacg 1020 gacggcccgg gtcgccccga gtctcccggt ctgagatcca ccccgaggct gcggaacccg 1080 cccagaccct cgaccggaga gagccccagt cacctttacc cggtttcatt ttcagtttag 1140 gccaaaatcc ccgcgggttg gtcggggctg gggcggggct cgggggacgg ggctgaccac 1200 gggggcgggg ccagggtctc acaccctcca gaggatgtat ggctgcgacc tggggcccga 1260 cgggcgcctc ctccgcgggt ataaccagtt cgcctacgac ggcaaggatt acatcgccct 1320 gaatgaggac ctgcgctcct ggaccgccgc ggacacggcg gctcagatca cccagcgcaa 1380 gtgggaggcg gcccgtacgg cggagcagct gagagcctac ctggagggca cgtgcgtgga 1440 gtggctccgc agatacctgg agaacgggaa gaagacgctg cagcgcgcgg gtaccagggg 1500 cagtggggag ccttccccat ctcctgtaga tctcccggga tggcctccca cgaggagggg 1560 aggaaaatgg gatcagcgct ggaatatcgc cctcccttga atggagaatg ggatgagttt 1620 tcctgagttt cctctgaggg ccccctctgc tctctaggac aattaaggga tgaagtcctt 1680 gaggaaatgg aggggaagac agtccctgga atactgatca ggggtcccct ttgaccactt 1740 tgaccactgc agcagctgtg gtcaggctgc tgacctttct ctcaggcctt gttctctgcc 1800 tcacgctcaa tgtgtttaaa ggtttgattc cagcttttct gagtccttcg gcctccactc 1860 aggtcaggac cagaagtcgc tgttcctccc tcagagacta gaactttcca atgaatagga 1920 gattatccca ggtgcctgtg tccaggctgg cgtctgggtt ctgtgccccc ttccccaccc 1980 caggtgtcct gtccattctc aggatggtca catgggcact gttggagtgt cgcaagagag 2040 atacaaagtg tctgaatttt ctgactcttc ccgtcagaac acccaaagac acacgtgacc 2100 caccatcccg tctctgacca tgaggccacc ctgaggtgct gggccctggg cttctaccct 2160 gcggagatca cactgacctg gcagcgggat ggcgaggacc aaactcagga caccgagctt 2220 gtggagacca ggccagcagg agatggaacc ttccagaagt gggcagctgt ggtggtgcct 2280 tctggagaag agcagagata cacgtgccat gtgcagcacg aggggctgcc agagcccctc 2340 accctgagat ggggtaagga gggggatgag gggtcatgtg tcttctcagg gaaagcagaa 2400 gtcctggagc ccttcagccg ggtcagggct gaggcttggg ggtcagggcc cctcaccttc 2460 ccctcctttc ccagggccat cttcccagcc caccatcccc atcgtgggca tcgttgctgg 2520 cctggctgtc ctggctgtcc tagctgtcct aggagctgtg atggctgttg tgatgtgtag 2580 gaggaagagc tcaggtaggg aaggggtgag gagtggggtc tgggttttct tgtcccactg 2640 ggagtttcaa gccccaggta gaagtgtgcc ccacctcgtt actggaagca ccatccacac 2700 atgggccatc ccagcctggg accctgtgtg ctagcactta ctctgttgtg aagcacatga 2760 caatgaagga cagatgtatc accttgatga ttatggtgtt ggggtccttg attccagcat 2820 tcatgagtca ggggaaggtc cctgctaagg acagacctta ggagggcagt tgctccagaa 2880 cccacagctg ctttccccgt gtttcctgat cctgccctgg gtctgcagtc atagttctgg 2940 aaacttctct tgggtccaag actaggaggt tcccctaaga tcgcatggcc ctgcctcctc 3000 cctgtcccct cacagggcat tttcttccca caggtggaaa aggagggagc tgctctcagg 3060 ctgcgtgtaa gtgatggcgg tgggcgtgtg gaggagctca cccaccccat aattcctctt 3120 gtcccacatc tcctgcgggc tctgaccagg tctttttttt tgttctaccc cagccagcaa 3180 cagtgcccag ggctctgatg agtctctcat cgcttgaaaa ggtgagattc tggggagctg 3240 aagtggtcgg gggtggggca gagggaaaag gcctaggtaa tggggatcct ttgattggga 3300 cgtttcgaat gtgtggtgag ctgttcagag tgtcatcact taccatgact gacctgaatt 3360 tgttcatgac tattgtgttc tgtagcctga gacagctgcc tgtgtgggac tgagatgcag 3420 gatttcttca cacctttcct ttgtgacttc aagagcctct ggcatctctt tctgcaaagg 3480 catctgaatg tgtctgcgtt cctgttagca taatgtgagg aggtggagag acagcccacc 3540 cccgtgtcca ccgtgacccc tgtccccaca ctgacctgtg ttccctcccc gatcatcttt 3600 cctgttccag agaagtgggc tggatgtctc catctctgtc tcaactttac gtgtactgag 3660 ctgcaacttc ttacttccct actgaaaata agaatctgaa tataaatttg ttttctcaaa 3720 tatttgctat gagaggttga tggattaatt aaataagtca attcctggaa gttgagagag 3780 caaataaaga cctgagaacc ttccagaatc cgcatgttcg ctgtgctgag tctgttgcag 3840 gtgggggtgg ggaaggctgt gaggagacga gtgtggacgg ggcctgtgcc tagttgctgt 3900 tcagttcttc atgggcttta tgtggtcagt cctcagctgg gtcaccttca ctgctccatt 3960 gtccttgtcc cttcagtgga aacttgtcca gcgggagctg tgaccacaga ggctcacaca 4020 tcgcccaggg cagcccctgc acacgggagt ccctgtgctt tctgagacaa attttcagac 4080 ccattcagct cctgccctcc ttctagggct cctcttctgc tttggtctcc tgccctctct 4140 cccttccctg attccagtaa tcttcgtgct gactccaatc ccaactcatg aatctaaagc 4200 agagcctaat ttagattt 4218 //