Dbfetch
ID OK332181; SV 1; linear; genomic DNA; STD; HUM; 5976 BP. XX AC OK332181; XX DT 01-APR-2022 (Rel. 144, Created) DT 11-APR-2022 (Rel. 144, Last updated, Version 2) XX DE Homo sapiens MHC class II antigen (HLA-DQA1) gene, HLA-DQA1*03:03:01:12var DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5976 RA Mosbruger T.L., Dinou A., Ferriola D., Duke J.L., Pagkrati I., Damianos G., RA Kotsopoulou I., Tairis N., Tishkoff S., Monos D.S.; RT ; RL Submitted (29-SEP-2021) to the INSDC. RL Pathology, The Children's Hospital of Philadelphia, 3615 Civic Center Blvd. RL Rm 707A, Philadelphia, PA 19104, USA XX DR MD5; 2eef571f4108784b567f94d43bb41294. XX CC ##Assembly-Data-START## CC Assembly Method :: Twin v. 3.1.3; GenDx v. 2.13 CC Assembly Name :: Novel HLA alleles CC Coverage :: 5'UTR to 3'UTR CC Sequencing Technology :: Illumina; Oxford Nanopore CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5976 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene 1..5976 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:12var" FT mRNA join(1..367,4065..4313,4759..5040,5388..5976) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:12var" FT /product="MHC class II antigen" FT exon 1..367 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:12var" FT /number=1 FT 5'UTR 1..285 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:12var" FT CDS join(286..367,4065..4313,4759..5040,5388..5542) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:12var" FT /product="MHC class II antigen" FT /protein_id="UED37079.1" FT /translation="MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQYSHEFDGDEEFYVDLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSF FT LSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCA FT LGLSVGLVGIVVGTVLIIRGLRSVGASRHQGPL" FT intron 368..4064 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:12var" FT /number=1 FT exon 4065..4313 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:12var" FT /number=2 FT intron 4314..4758 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:12var" FT /number=2 FT exon 4759..5040 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:12var" FT /number=3 FT intron 5041..5387 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:12var" FT /number=3 FT exon 5388..5976 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:12var" FT /number=4 FT 3'UTR 5543..5976 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*03:03:01:12var" XX SQ Sequence 5976 BP; 1698 A; 1274 C; 1291 G; 1713 T; 0 other; gaagattcca atttagtgtc ctccctctgt tcatagaaca attcctcaag tccactctga 60 gtagaggctg catcacaaca aggggattgc cctgtctcct tccagggctc ttaatacaaa 120 ctcttcagct agtaactgag atgtcaccat gggggatttt tctaattggc caaaacctga 180 cctggcaggg tttggtttgg gtgtcttcag atttccttgt cttgaggccc tcacaattgc 240 tctacagctc agaacagcaa ctgctgaggc tgccttggga agaggatgat cctaaacaaa 300 gctctgatgc tgggggccct cgccctgacc accgtgatga gcccttgtgg aggtgaagac 360 attgtgggtg agtgcatgag tgaggaatgt tctctggagc tgaaaaacaa taaattgaag 420 gaaaagagag aaagcgattt gcagagaaat tgtagagatt tcctaagacc cctttcagta 480 ttaagagaat taaaaattat agctgttcct ccttcaggaa accagagccc caacctactc 540 tttttgttat gtatgctttt gtgttcacta aggatgctat tctgtttata ttatattcag 600 tgacaacagc ctggaggtct ctatgtcgtt ccgtcatgat tgcctcaaaa attagtgaag 660 tttccatcag tggataattt tttattatta aaaatgtatg aagtgtcatt ctcaaatttc 720 cctgaacaac ttttgaagct tttcgtatgt ctcctgtagt agatcttggg gtcgttccat 780 caattatata ctctatagat attaaaaaag ttgcccgttt ctttctctca gacttactca 840 catttccaca tgggaactgg cacaggtggg gagtgggtaa aggagtccag caggctgaat 900 gccttcaaca atcattttac cacatggtcc tcacttactc tcagctgcct catatgtgtc 960 acctcacaaa taatcaaata aaatgggcat gtagctaagc tttgtaaata gtgaaaacat 1020 ggatgtcaat tgtttttaca tatttctatt acaggtatag cttcacattt ttctttagca 1080 aaataaggga tccttttagt ttaaaattga gaagtagaaa aaattggtaa attaaatcat 1140 tttattctca aattatcaac ccaaattacc tgttcttcac ctcatctaat aaagtcctat 1200 aaaaagaaaa gtgggccaga catggtggct catgcctgta atcccagcac tttgggaggc 1260 cgaagcagga ggatcatttg agcctgggag tttgagacca gcctgggcaa catagcaaga 1320 cctcatctct accaaaaaat aaaataaaaa ttagccaggt gtggtggtgc atgcctgtgg 1380 tgccagctac tcagaaggct gcagtgggag gagcacttga gtccaggagg tggaagctgc 1440 agtgagccat gatggcacca ctacactcca gccagggcaa cagagagaga ctctgtctca 1500 aaaagaaaga ggaaagaaag agagaaagga aggaaagaag gaaagaagga aggaaggaag 1560 gagaaaggga agggaggaag gaaaaaagaa agaaagaaag aaaacggaag gaaggaagca 1620 cagattaatt atttggtctc tttgtctcct ctgcctttgt cgtccatctc ttcccacctc 1680 tcttcatgca ttcctttctc cctcttccct ttcaggatcc atctctgact ccctgctcct 1740 ttatagagat ggacagtgag tttgtaaaac aaaagttgaa aagtcagata gttaaaaggg 1800 gaagtgaact ggaaggtact ctaaactttc acaaccttat taaccatggc tgctcccatt 1860 ctgattttgt tcagcagtgg aagtttcacc cgctcctcca gagcgcttgg cttctttgtt 1920 ccaaatttcc tttcttcaac ctcacaccag agtgccctgg tcaggctcag ctcatccatt 1980 aggcacaatg tgggcagtgc aggggaccct ccagactgta aagccacatg agaatgtttt 2040 aactcctttt aaaattataa aaaaatgaaa ttgtagagcc taagaaaatg ttttaacttt 2100 taattcagcc tagattatat tgtctttata ccaattcagt cataaaatat agttttccat 2160 atttttatgg aggaaggcgt ccacacaagc aagagtgctt ggggctcaca tgtcagaacg 2220 caaccctgat catggctgat cctggccttc gtgtggttct gctaactatg tgcctgtcag 2280 tcttccccaa aatctatgtg gtcctcaaat ataacaactg tcattcaata cacatgtttg 2340 agcacccagt gagctaagtt ttaaggattc aaagatgaaa agtcatgctg tctcctctgc 2400 aaagggtgct cagactagtg atggaaacag tatgggatga aagaaagcag aaggccattg 2460 ctgagcaggc agtggactca gcagaggctg aaactataca agtgacttgg ttccagctgg 2520 gccagcagga taaccagatg aaaagaagga ttgcatatat tccatatata tttatgtttg 2580 aacaaagagt caaggtttat tgcaaggata aggaggtttt gttggtggcc tgttaagacc 2640 atccagggtg gtcatactgg atagggaaga aggtgagctg gaagaggaac agacaaactt 2700 ggatggccag atgttgagat ggaggagatg gaggtcataa cgtggtcaaa aacatgttga 2760 tgagaggact tagctacaaa gttgttaact taagcagaaa cctcaaggat tgattttatg 2820 atttctccag gaagtcctaa aagttaattt catttcaggg agaaaaacaa cagaccactg 2880 caaagaccag gaacatgaaa ggataatgta gtttggtttg cttggcagat acttgtgaaa 2940 gatgttggac tgtaaggctg tcaatatcct cctcgcagaa cttactacag tacattgtat 3000 ctgctccctt acctacctga ctctcccact attcagtttg ttccttaatg gtagaccatg 3060 cctgatcggt gttttacaca tcccctgcta tgtctgatac ttgtggatgc tcagaaagtg 3120 gggaaggaag gaaagatacg atggtaaaag gcttacacat gtcttgagca gaatgttcag 3180 tttggctcat ttggctggag tcatactgca tggctgccat tctgctctgg catcctcaga 3240 gaagcacact gcccattaaa ggaaaaaggg tgaatacaaa tgttgagtca gaacactgca 3300 gacatttagt aacctccttc agaggaaaaa aaaaggtggg gggaatgaca gaaatccaaa 3360 aactagtaga gcttccactt tttcatttca gaagaaatca gttactctcc tctaaggacc 3420 attactatta acaaaacaga gaccttagaa ggaagcatta tttacttatc atatattttg 3480 taatgttatt acccttcttg ttatactctt tcttataccc taccattgtt agcagaaatt 3540 attttaaatt aataagatcc tgcatgcttt tcctttttct aaaaaaagaa agatctctgt 3600 gtagaatgtc ctgttctgag ccagtcctga gaggaaagga agtataatca atttgttatt 3660 aactgatgaa agaattaagt gaaagataaa ccttaggaag cagagggaag ttaatctatg 3720 actaagaaag ttaagtactc tgataactca ttcattcctt cttttgttca tttacattat 3780 ttaatcacaa gtctatgatg tgccaggcac tcaggaaata gtgaaaattg gacacgcgat 3840 attctgccct tgtgtagcac acaccgtagt gggaaagaaa gtgcactttt aaccggacaa 3900 ctatcaacac gaagagggga ggaagcaggg gctggaaatg tccacagact ttgccaaaga 3960 caaagcccat aatatctgaa agtcagtttc ttccatcatt ttgtgtatta aggttcttta 4020 ttcccctgtt ctctgccttc ctgcttgtca tcttcactca tcagctgacc atgttgcctc 4080 ttacggtgta aacttgtacc agtcttatgg tccctctggg cagtacagcc atgaatttga 4140 tggagacgag gagttctatg tggacctgga gaggaaggag actgtctggc agttgcctct 4200 gttccgcaga tttagaagat ttgacccgca atttgcactg acaaacatcg ctgtgctaaa 4260 acataacttg aacatcgtga ttaaacgctc caactctacc gctgctacca atggtatgtg 4320 tccaccattc tgcctttctt tactgattta tccctttata ccaagtttca ttattttctt 4380 tccaagaggt ccccagatct tctcatggca attgctgaaa ttttatcatt tctcatctct 4440 aaaatcacat attccaatgt aatacaaggg tctttccatt atgcattcat taaatccttc 4500 taggagaggt ctcatcaacc ttctacttta ttaaacatgc ccacagagag aagggcacag 4560 gagtaaagca gaggcaatgt gtcgttgctc ccaaatgtgt cgttacaatg tgtcgttgct 4620 tacccaaaga ggtaaataag gcctctttga ccagcaggag aggaaatgct ggtaggaaga 4680 ctcttccagg atgtaatgca gaagaagctc agggcagagc tattcacact ttacaccagt 4740 gctgtttcct caccatagag gttcctgagg tcacagtgtt ttccaagtct cccgtgacac 4800 tgggtcagcc caacaccctc atctgtcttg tggacaacat ctttcctcct gtggtcaaca 4860 tcacctggct gagcaatggg cactcagtca cagaaggtgt ttctgagacc agcttcctct 4920 ccaagagtga tcattccttc ttcaagatca gttacctcac cttcctccct tctgatgatg 4980 agatttatga ctgcaaggtg gagcactggg gcctggatga gcctcttctg aaacactggg 5040 gtaaggatga gtttcaccat tttttgatgc tttcttgtct gtcaagttca gaacttcctg 5100 ccttttactc tatatcccaa aacttgtttt ccacacttca tgagtttctt ttgtcttttt 5160 tttgaaagaa ttaagcaaca aaagcacaga tttattaaaa aagaaagtac actccacagg 5220 gtgggagcag gcctgccact tcatgggttt ctaataacag acttcactct cctccctaag 5280 ctgggggcct tgagtctttg cagagccaac cctctacccc atcccatccc acacacatgc 5340 acatgagcaa actctgcatt ctgacctcaa caacttcact tccacagagc ctgagattcc 5400 aacacctatg tcagagctca cagagactgt ggtctgcgcc ctggggttgt ctgtgggcct 5460 cgtgggcatt gtggtgggga ccgtcttgat catccgaggc ctgcgttcag ttggtgcttc 5520 cagacaccaa gggcccttgt gaatcccatc ctgaaaagga aggtaagatt gagatttgtt 5580 agagctgaag ctgcaggaag gaaagtggga ggaggctgtg gacatgaatg tggttgaaag 5640 ttgtagggga attgggaagt ggcatgatga tgacacagga gcccccttgg acccatcgat 5700 ctcatgtctg tcctgttgca ggtgcatcac catctacagc agcggaagag tggacttgct 5760 acatgaccta gcactattct ctggcccgat ttatcatacc ctttttctcc tgcaaatgtt 5820 tcttctctta ccttttctct gctttttttt tcttaagctt ctgtatcccc tcagagctca 5880 caaatgcctt tgaattcttt ccctgacctc ctgatttttt tttcttttct caggtgttac 5940 ctactaagag atgcctgggg taagccgccc agctac 5976 //