Dbfetch

ID   OK332090; SV 1; linear; genomic DNA; STD; HUM; 5640 BP.
XX
AC   OK332090;
XX
DT   01-APR-2022 (Rel. 144, Created)
DT   11-APR-2022 (Rel. 144, Last updated, Version 2)
XX
DE   Homo sapiens MHC class II antigen (HLA-DPA1) gene, HLA-DPA1*01:03:01:02var
DE   allele, complete cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-5640
RA   Mosbruger T.L., Dinou A., Ferriola D., Duke J.L., Pagkrati I., Damianos G.,
RA   Kotsopoulou I., Tairis N., Tishkoff S., Monos D.S.;
RT   ;
RL   Submitted (16-SEP-2021) to the INSDC.
RL   Pathology, The Children's Hospital of Philadelphia, 3615 Civic Center Blvd.
RL   Rm 707A, Philadelphia, PA 19104, USA
XX
DR   MD5; 5753a8cd5a4c242af4c111508b4978c1.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Twin v. 3.1.3; GenDx v. 2.13
CC   Assembly Name         :: Novel HLA alleles
CC   Coverage              :: 5'UTR to 3'UTR
CC   Sequencing Technology :: Illumina; Oxford Nanopore
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..5640
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            1..5640
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:02var"
FT   mRNA            join(1..166,3751..3996,4337..4618,4833..5640)
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:02var"
FT                   /product="MHC class II antigen"
FT   exon            1..166
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:02var"
FT                   /number=1
FT   5'UTR           1..66
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:02var"
FT   CDS             join(67..166,3751..3996,4337..4618,4833..4987)
FT                   /codon_start=1
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:02var"
FT                   /product="MHC class II antigen"
FT                   /protein_id="UED36989.1"
FT                   /translation="MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQ
FT                   THRPTGEFMFEFDEDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTL
FT                   IQRSNHTQATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGV
FT                   AESLFLPRTDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTE
FT                   TVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGTL"
FT   intron          167..3750
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:02var"
FT                   /number=1
FT   exon            3751..3996
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:02var"
FT                   /number=2
FT   intron          3997..4336
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:02var"
FT                   /number=2
FT   exon            4337..4618
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:02var"
FT                   /number=3
FT   intron          4619..4832
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:02var"
FT                   /number=3
FT   exon            4833..5640
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:02var"
FT                   /number=4
FT   3'UTR           4988..5640
FT                   /gene="HLA-DPA1"
FT                   /allele="HLA-DPA1*01:03:01:02var"
XX
SQ   Sequence 5640 BP; 1489 A; 1332 C; 1084 G; 1735 T; 0 other;
     tccactcggc ctcagttcct catcactgtt cctgtgctca cagtcatcaa ttatagaccc        60
     cacaacatgc gccctgaaga cagaatgttc catatcagag ctgtgatctt gagagccctc       120
     tccttggctt tcctgctgag tctccgagga gctggggcca tcaagggtga gtgctcagga       180
     ggacgcagga gcgtcggggt gagtgatggg gtggttcaca tcaattgctg cttcagggat       240
     cacagatttt aggggctcat tgatctatct ggtcctcata gtctatgttc cctctggccc       300
     tcataataat aacagcaata acagccagaa tttatgagac tcctgcatag tttctttccc       360
     catttacatc tcacaggaat cttcaatgaa gataatattc cattcattta gaaattattc       420
     cttttattta gaaattattt tgaaaaaact gaagctcaaa aagatgaata agttttccaa       480
     ggttacacag cagatcaacg agccaagttt gaagtccaga cccagctctg agggtcatac       540
     actgccttcc ccagattcct gcacacagtg acctactatc agggccctcc tatctctctg       600
     ggatccccag cctctatctt ttgtggctgc tttacaggaa ctccgagcta tggactctgc       660
     attaggagac gaagtgcaaa gagtgtttct gtatcctccc tctcttctag gaccctaggg       720
     ctcttcctgg gtctttgtgg gtggtcacaa gctttcctct ctcaagacag cagggttgca       780
     tggtcttgat agccttgtga ttcgggttct gagagattca ggactgcaag ggaggcctag       840
     acttttgata gctgcaagga ctcagccaga gatggaccgt agtgaatgct cctttttcct       900
     gtagctgaaa tcagggagaa tgacatcaag cctgtgcatg atgctgtcat tccaaaatct       960
     agtgatgggg aaggttagaa tccataacgt acaagatgca cactggcttc agacagtttt      1020
     atttaagatg tgtagaataa agaggaggtc aggctgggta gaaccagaag tatctattgc      1080
     cctgttcgcg gtcacctgag ttatttctaa tgttatgtta taataaacac cacaataggc      1140
     ttctcttcat agatgcaaat actttttagt attcttggta gaaattccta atgagctcag      1200
     ctgtctcttc agggcttccc tgcccagtct cttaacattt aaacatgtca tttaccttaa      1260
     aaacataagt gcaaaccaac tgataaaaaa caaccttgcc ttcagtctgc atcctgtccc      1320
     agagacactt tctttgtgtc ctcacacgtg gagctaagct tctgacttgt ctctggtaca      1380
     tccctgagga tcctctcatc ttggccatca ggaacctcta cagaaggtca aattcagtgg      1440
     gttcttctca gtgcctctga cttgagttac taataacatt tgcactataa tccacttctt      1500
     tctgatgaac taccctgtcc ttatttttct cctgtttacc tggatcctcc ttatcatctt      1560
     ttaaaccacc tcttaactat catgttctct cattataccc tgagatctca gcaattctga      1620
     tttttggcac tcttcctgga aaatcttatt taacctgcac ctgccactaa tgactctcag      1680
     ttctatggcc taaattcctc tcctgagacc acccataatc cacaaatatc tatgtattat      1740
     ttctccttag atgactttca ggtcttctaa gtgcaatagc cccacagtaa actcagtatc      1800
     ttctcccggt caggctgtct tccctgagag aagtggcttt tgccctgttt tctgaatgcc      1860
     tacattgaag ccatctgttc cccaggaagc cttccctgat gtgctgtttg gtcgcatctt      1920
     gtgtatacct acgtatctgc acttatcctt ctgaacctgc tgttgtcctg tcacttgtgt      1980
     ttccttctgt gacttatacg cgtctgcaga acaggacgta tgtattattt ttatttgggt      2040
     atttagcatc taacagtgtt tgacatatag tagtctttta atacatattt ttgtctgaat      2100
     ggaaatgata ttttgaagaa aaataatctg ttccatagct ggctgatctt tggactgcag      2160
     aacttgtgaa agtgtttttt aaaaagcatt ttaaaaagta caagggacat tcatgtatta      2220
     agaagatgag tttccaataa ctgctagagg actttgtgtc tttttatttt accctctttt      2280
     tcctgatgag tcctttgagt cctttaaact gaggagcaag ctaagtttcc tagtgaaata      2340
     cctataggat ttgttttgtt tagtttcaaa taccactctt tgcttggcca cttactgtgt      2400
     cagggagtca ttctcagtga aaaataagac acaggtcata ccctctagac acttacaatt      2460
     acagtggcaa ggagtcattc tcctgtcact gtaagtggcc aagcacagac tgggtcccca      2520
     catgtcaggg ctgaaaactc acagggaaat ctgtgagttg ggaggtgaga gcagaagagt      2580
     cccgtagttc cttctcactc tgatgcattt atcattctaa acccagactt tcacatacac      2640
     attcatcgtt ttctttcatg ataatagttg cttttatcct cttatctttg ctaattctta      2700
     caaactaata aagactaaga aacaaaataa attaaatcct acaggtgttc caaactcagc      2760
     aataatttct agttggcctc taaaacaaaa atcaaaatat aaatgtaaga aaagtttaga      2820
     atgcttagta cctgtgtgat gaaataatct gtacactaaa cccccaagtc atgagtttac      2880
     ctatacaaca aacctgcaca tgtactcctg aacataaaat aaatgttgaa atatttttaa      2940
     aaaggaaaca aaagtttgga acaaatgcca aaataactgt actgtacttt tgaatttata      3000
     tgccccaaat gaaaaatatt atcaacaaag ctatacattc tacagtttca tgttcataaa      3060
     ctaagacaga aactttaaaa ctgtcaagag ccctaaaatt tgaaggatat tttcttcttc      3120
     ctctcaattt tgtatttttt tctacctttt ctataataag aaaaagaaaa tgtccattcc      3180
     cccaccccca tgactctaaa aacaatttta catctgtgtc atagaaaaat taagatctta      3240
     atgggagaga aaacctctct actagttccg ccagtagccg tatgacctta gcaagttatt      3300
     aatatgtaac ttccctgcat ttccttacct gtaaaatgta tgatatgtat ttgcttcata      3360
     gggttattgt gacaattcag cgagtgaaat atgtaaagta tttagaagga tgcctggcac      3420
     aagtaagtgc tcaacaaatg ttagctgtca ttgttactat tactattgtg tagggtcagg      3480
     atgcccagac tttcaaagac caggaagcag cttgacttat cagtgataaa cttttcattt      3540
     tgttctttgc tcctttcttt ttataactgc tcatctgctc tgtattattt cctttatggt      3600
     gttgctcctt cttcttcccc atatgtcctt cctttgacct cttaccttct tcctttttat      3660
     attcataagt ctttattcat tctctagctt tgaccacttg catattcaaa ctgacatttt      3720
     gtcgtgtttt tctctactgt ctttatgcag cggaccatgt gtcaacttat gccgcgtttg      3780
     tacagacgca tagaccaaca ggggagttta tgtttgaatt tgatgaagat gagatgttct      3840
     atgtggatct ggacaagaag gagaccgtct ggcatctgga ggagtttggc caagcctttt      3900
     cctttgaggc tcagggcggg ctggctaaca ttgctatatt gaacaacaac ttgaatacct      3960
     tgatccagcg ttccaaccac actcaggcca ccaacggtac gccctatctt tgcctcttcc      4020
     tctgtagccc aactggaagg gatgagaggg cctctctgcc accctcagac taggaagcct      4080
     aagtgccccc tgctgtgtga tcctcttccc ctagtggcca tgggctgatc ccactacagc      4140
     aagggcttgc atcctctctt ctcaggagag agaaaggtga gcagagtgag gctggtcagt      4200
     ggtgtgatac ccctctctgt gattcagagc tgccataaaa tctaaggctg aggtagagga      4260
     ccaccctccc ctaagaggtg gagcctttgt gattcatccc agaagagggg cctaacctgg      4320
     tgctgtctcc ttccagatcc ccctgaggtg accgtgtttc ccaaggagcc tgtggagctg      4380
     ggccagccca acaccctcat ctgccacatt gacaagttct tcccaccagt gctcaacgtc      4440
     acgtggctgt gcaacgggga gctggtcact gagggtgtcg ctgagagcct cttcctgccc      4500
     agaacagatt acagcttcca caagttccat tacctgacct ttgtgccctc agcagaggac      4560
     ttctatgact gcagggtgga gcactggggc ttggaccagc cgctcctcaa gcactggggt      4620
     atgcaactgc ttttctctcc ataatctcct ggcatcctct attccaaaga cctggtgtcc      4680
     tctgcaccag ctttccgcac tggctgggtc tcagtcctct cctcgtccta acatccaatt      4740
     aactggtcca taaccttcaa ttcccacaac catcccaggc catcaccacc ctcactgcac      4800
     ctcctgaccc tatctcttca ttcttccccc agaggcccaa gagccaatcc agatgcctga      4860
     gacaacggag actgtgctct gtgccctggg cctggtgctg ggcctagtcg gcatcatcgt      4920
     gggcaccgtc ctcatcataa agtctctgcg ttctggccat gacccccggg cccaggggac      4980
     cctgtgaaat actgtaaagg tgggaatgta aagaggaggc cctaggattt gtagaatgta      5040
     aggaagggag gaaaaattca atctgataag tgttcattga tcttctaatg ggttaaaagc      5100
     attcagccac ataacaacaa caacaccgat aactaactga gtagttaata tggtcaggcg      5160
     ctattctgag gatttacatt tattaactca ctttattctc acacatagtc tttgaggtag      5220
     gtactattat tttcactatt tcacatgaga gatacttaca tctttttaca tacacagaga      5280
     ctttaagcac tttgatcaag ttcccacagc tatgaagtag tagggctagc ttccaatcca      5340
     gaaagtctgg atccaagact gtttatccac tgtcctattc accctatttt gtgaaggaaa      5400
     agaccaagtt caaattctcc agagtccatt gccaaataat ggagtcagat ctatatttct      5460
     atacataatt acaacacagt gtggtgggtg cctgtaacta cttactgtct ctacttggac      5520
     tcattccatg gcaatgttca cacaaaaaat gcctctccag agatcttaca ggtttctatt      5580
     tatcataaca ctcaccatgc tttatatttt tatatgtttt gggaattctc ttagcattag      5640
//