Dbfetch
ID OK332090; SV 1; linear; genomic DNA; STD; HUM; 5640 BP.
XX
AC OK332090;
XX
DT 01-APR-2022 (Rel. 144, Created)
DT 11-APR-2022 (Rel. 144, Last updated, Version 2)
XX
DE Homo sapiens MHC class II antigen (HLA-DPA1) gene, HLA-DPA1*01:03:01:02var
DE allele, complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-5640
RA Mosbruger T.L., Dinou A., Ferriola D., Duke J.L., Pagkrati I., Damianos G.,
RA Kotsopoulou I., Tairis N., Tishkoff S., Monos D.S.;
RT ;
RL Submitted (16-SEP-2021) to the INSDC.
RL Pathology, The Children's Hospital of Philadelphia, 3615 Civic Center Blvd.
RL Rm 707A, Philadelphia, PA 19104, USA
XX
DR MD5; 5753a8cd5a4c242af4c111508b4978c1.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Twin v. 3.1.3; GenDx v. 2.13
CC Assembly Name :: Novel HLA alleles
CC Coverage :: 5'UTR to 3'UTR
CC Sequencing Technology :: Illumina; Oxford Nanopore
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..5640
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene 1..5640
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:02var"
FT mRNA join(1..166,3751..3996,4337..4618,4833..5640)
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:02var"
FT /product="MHC class II antigen"
FT exon 1..166
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:02var"
FT /number=1
FT 5'UTR 1..66
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:02var"
FT CDS join(67..166,3751..3996,4337..4618,4833..4987)
FT /codon_start=1
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:02var"
FT /product="MHC class II antigen"
FT /protein_id="UED36989.1"
FT /translation="MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQ
FT THRPTGEFMFEFDEDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTL
FT IQRSNHTQATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGV
FT AESLFLPRTDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTE
FT TVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGTL"
FT intron 167..3750
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:02var"
FT /number=1
FT exon 3751..3996
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:02var"
FT /number=2
FT intron 3997..4336
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:02var"
FT /number=2
FT exon 4337..4618
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:02var"
FT /number=3
FT intron 4619..4832
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:02var"
FT /number=3
FT exon 4833..5640
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:02var"
FT /number=4
FT 3'UTR 4988..5640
FT /gene="HLA-DPA1"
FT /allele="HLA-DPA1*01:03:01:02var"
XX
SQ Sequence 5640 BP; 1489 A; 1332 C; 1084 G; 1735 T; 0 other;
tccactcggc ctcagttcct catcactgtt cctgtgctca cagtcatcaa ttatagaccc 60
cacaacatgc gccctgaaga cagaatgttc catatcagag ctgtgatctt gagagccctc 120
tccttggctt tcctgctgag tctccgagga gctggggcca tcaagggtga gtgctcagga 180
ggacgcagga gcgtcggggt gagtgatggg gtggttcaca tcaattgctg cttcagggat 240
cacagatttt aggggctcat tgatctatct ggtcctcata gtctatgttc cctctggccc 300
tcataataat aacagcaata acagccagaa tttatgagac tcctgcatag tttctttccc 360
catttacatc tcacaggaat cttcaatgaa gataatattc cattcattta gaaattattc 420
cttttattta gaaattattt tgaaaaaact gaagctcaaa aagatgaata agttttccaa 480
ggttacacag cagatcaacg agccaagttt gaagtccaga cccagctctg agggtcatac 540
actgccttcc ccagattcct gcacacagtg acctactatc agggccctcc tatctctctg 600
ggatccccag cctctatctt ttgtggctgc tttacaggaa ctccgagcta tggactctgc 660
attaggagac gaagtgcaaa gagtgtttct gtatcctccc tctcttctag gaccctaggg 720
ctcttcctgg gtctttgtgg gtggtcacaa gctttcctct ctcaagacag cagggttgca 780
tggtcttgat agccttgtga ttcgggttct gagagattca ggactgcaag ggaggcctag 840
acttttgata gctgcaagga ctcagccaga gatggaccgt agtgaatgct cctttttcct 900
gtagctgaaa tcagggagaa tgacatcaag cctgtgcatg atgctgtcat tccaaaatct 960
agtgatgggg aaggttagaa tccataacgt acaagatgca cactggcttc agacagtttt 1020
atttaagatg tgtagaataa agaggaggtc aggctgggta gaaccagaag tatctattgc 1080
cctgttcgcg gtcacctgag ttatttctaa tgttatgtta taataaacac cacaataggc 1140
ttctcttcat agatgcaaat actttttagt attcttggta gaaattccta atgagctcag 1200
ctgtctcttc agggcttccc tgcccagtct cttaacattt aaacatgtca tttaccttaa 1260
aaacataagt gcaaaccaac tgataaaaaa caaccttgcc ttcagtctgc atcctgtccc 1320
agagacactt tctttgtgtc ctcacacgtg gagctaagct tctgacttgt ctctggtaca 1380
tccctgagga tcctctcatc ttggccatca ggaacctcta cagaaggtca aattcagtgg 1440
gttcttctca gtgcctctga cttgagttac taataacatt tgcactataa tccacttctt 1500
tctgatgaac taccctgtcc ttatttttct cctgtttacc tggatcctcc ttatcatctt 1560
ttaaaccacc tcttaactat catgttctct cattataccc tgagatctca gcaattctga 1620
tttttggcac tcttcctgga aaatcttatt taacctgcac ctgccactaa tgactctcag 1680
ttctatggcc taaattcctc tcctgagacc acccataatc cacaaatatc tatgtattat 1740
ttctccttag atgactttca ggtcttctaa gtgcaatagc cccacagtaa actcagtatc 1800
ttctcccggt caggctgtct tccctgagag aagtggcttt tgccctgttt tctgaatgcc 1860
tacattgaag ccatctgttc cccaggaagc cttccctgat gtgctgtttg gtcgcatctt 1920
gtgtatacct acgtatctgc acttatcctt ctgaacctgc tgttgtcctg tcacttgtgt 1980
ttccttctgt gacttatacg cgtctgcaga acaggacgta tgtattattt ttatttgggt 2040
atttagcatc taacagtgtt tgacatatag tagtctttta atacatattt ttgtctgaat 2100
ggaaatgata ttttgaagaa aaataatctg ttccatagct ggctgatctt tggactgcag 2160
aacttgtgaa agtgtttttt aaaaagcatt ttaaaaagta caagggacat tcatgtatta 2220
agaagatgag tttccaataa ctgctagagg actttgtgtc tttttatttt accctctttt 2280
tcctgatgag tcctttgagt cctttaaact gaggagcaag ctaagtttcc tagtgaaata 2340
cctataggat ttgttttgtt tagtttcaaa taccactctt tgcttggcca cttactgtgt 2400
cagggagtca ttctcagtga aaaataagac acaggtcata ccctctagac acttacaatt 2460
acagtggcaa ggagtcattc tcctgtcact gtaagtggcc aagcacagac tgggtcccca 2520
catgtcaggg ctgaaaactc acagggaaat ctgtgagttg ggaggtgaga gcagaagagt 2580
cccgtagttc cttctcactc tgatgcattt atcattctaa acccagactt tcacatacac 2640
attcatcgtt ttctttcatg ataatagttg cttttatcct cttatctttg ctaattctta 2700
caaactaata aagactaaga aacaaaataa attaaatcct acaggtgttc caaactcagc 2760
aataatttct agttggcctc taaaacaaaa atcaaaatat aaatgtaaga aaagtttaga 2820
atgcttagta cctgtgtgat gaaataatct gtacactaaa cccccaagtc atgagtttac 2880
ctatacaaca aacctgcaca tgtactcctg aacataaaat aaatgttgaa atatttttaa 2940
aaaggaaaca aaagtttgga acaaatgcca aaataactgt actgtacttt tgaatttata 3000
tgccccaaat gaaaaatatt atcaacaaag ctatacattc tacagtttca tgttcataaa 3060
ctaagacaga aactttaaaa ctgtcaagag ccctaaaatt tgaaggatat tttcttcttc 3120
ctctcaattt tgtatttttt tctacctttt ctataataag aaaaagaaaa tgtccattcc 3180
cccaccccca tgactctaaa aacaatttta catctgtgtc atagaaaaat taagatctta 3240
atgggagaga aaacctctct actagttccg ccagtagccg tatgacctta gcaagttatt 3300
aatatgtaac ttccctgcat ttccttacct gtaaaatgta tgatatgtat ttgcttcata 3360
gggttattgt gacaattcag cgagtgaaat atgtaaagta tttagaagga tgcctggcac 3420
aagtaagtgc tcaacaaatg ttagctgtca ttgttactat tactattgtg tagggtcagg 3480
atgcccagac tttcaaagac caggaagcag cttgacttat cagtgataaa cttttcattt 3540
tgttctttgc tcctttcttt ttataactgc tcatctgctc tgtattattt cctttatggt 3600
gttgctcctt cttcttcccc atatgtcctt cctttgacct cttaccttct tcctttttat 3660
attcataagt ctttattcat tctctagctt tgaccacttg catattcaaa ctgacatttt 3720
gtcgtgtttt tctctactgt ctttatgcag cggaccatgt gtcaacttat gccgcgtttg 3780
tacagacgca tagaccaaca ggggagttta tgtttgaatt tgatgaagat gagatgttct 3840
atgtggatct ggacaagaag gagaccgtct ggcatctgga ggagtttggc caagcctttt 3900
cctttgaggc tcagggcggg ctggctaaca ttgctatatt gaacaacaac ttgaatacct 3960
tgatccagcg ttccaaccac actcaggcca ccaacggtac gccctatctt tgcctcttcc 4020
tctgtagccc aactggaagg gatgagaggg cctctctgcc accctcagac taggaagcct 4080
aagtgccccc tgctgtgtga tcctcttccc ctagtggcca tgggctgatc ccactacagc 4140
aagggcttgc atcctctctt ctcaggagag agaaaggtga gcagagtgag gctggtcagt 4200
ggtgtgatac ccctctctgt gattcagagc tgccataaaa tctaaggctg aggtagagga 4260
ccaccctccc ctaagaggtg gagcctttgt gattcatccc agaagagggg cctaacctgg 4320
tgctgtctcc ttccagatcc ccctgaggtg accgtgtttc ccaaggagcc tgtggagctg 4380
ggccagccca acaccctcat ctgccacatt gacaagttct tcccaccagt gctcaacgtc 4440
acgtggctgt gcaacgggga gctggtcact gagggtgtcg ctgagagcct cttcctgccc 4500
agaacagatt acagcttcca caagttccat tacctgacct ttgtgccctc agcagaggac 4560
ttctatgact gcagggtgga gcactggggc ttggaccagc cgctcctcaa gcactggggt 4620
atgcaactgc ttttctctcc ataatctcct ggcatcctct attccaaaga cctggtgtcc 4680
tctgcaccag ctttccgcac tggctgggtc tcagtcctct cctcgtccta acatccaatt 4740
aactggtcca taaccttcaa ttcccacaac catcccaggc catcaccacc ctcactgcac 4800
ctcctgaccc tatctcttca ttcttccccc agaggcccaa gagccaatcc agatgcctga 4860
gacaacggag actgtgctct gtgccctggg cctggtgctg ggcctagtcg gcatcatcgt 4920
gggcaccgtc ctcatcataa agtctctgcg ttctggccat gacccccggg cccaggggac 4980
cctgtgaaat actgtaaagg tgggaatgta aagaggaggc cctaggattt gtagaatgta 5040
aggaagggag gaaaaattca atctgataag tgttcattga tcttctaatg ggttaaaagc 5100
attcagccac ataacaacaa caacaccgat aactaactga gtagttaata tggtcaggcg 5160
ctattctgag gatttacatt tattaactca ctttattctc acacatagtc tttgaggtag 5220
gtactattat tttcactatt tcacatgaga gatacttaca tctttttaca tacacagaga 5280
ctttaagcac tttgatcaag ttcccacagc tatgaagtag tagggctagc ttccaatcca 5340
gaaagtctgg atccaagact gtttatccac tgtcctattc accctatttt gtgaaggaaa 5400
agaccaagtt caaattctcc agagtccatt gccaaataat ggagtcagat ctatatttct 5460
atacataatt acaacacagt gtggtgggtg cctgtaacta cttactgtct ctacttggac 5520
tcattccatg gcaatgttca cacaaaaaat gcctctccag agatcttaca ggtttctatt 5580
tatcataaca ctcaccatgc tttatatttt tatatgtttt gggaattctc ttagcattag 5640
//