Dbfetch
ID OK332081; SV 1; linear; genomic DNA; STD; HUM; 3036 BP. XX AC OK332081; XX DT 01-APR-2022 (Rel. 144, Created) DT 11-APR-2022 (Rel. 144, Last updated, Version 2) XX DE Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*06:02:01:01var allele, DE complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3036 RA Mosbruger T.L., Dinou A., Ferriola D., Duke J.L., Pagkrati I., Damianos G., RA Kotsopoulou I., Tairis N., Tishkoff S., Monos D.S.; RT ; RL Submitted (16-SEP-2021) to the INSDC. RL Pathology, The Children's Hospital of Philadelphia, 3615 Civic Center Blvd. RL Rm 707A, Philadelphia, PA 19104, USA XX DR MD5; bf6837f6472d590fac215e16fe5dd11b. XX CC ##Assembly-Data-START## CC Assembly Method :: Twin v. 3.1.3; GenDx v. 2.13 CC Assembly Name :: Novel HLA alleles CC Coverage :: 5'UTR to 3'UTR CC Sequencing Technology :: Illumina; Oxford Nanopore CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3036 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene 1..3036 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT mRNA join(1..195,326..595,842..1117,1705..1980,2102..2221, FT 2661..2693,2801..2848,3013..3036) FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /product="MHC class I antigen" FT exon 1..195 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=1 FT 5'UTR 1..122 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT CDS join(123..195,326..595,842..1117,1705..1980,2102..2221, FT 2661..2693,2801..2848,3013..3017) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /product="MHC class I antigen" FT /protein_id="UED36980.1" FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFDTAVSRPGRGEPR FT FISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVNLRK FT LRGYYNQSEDGSHTLQWMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAAREAEQWRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" FT intron 196..325 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=1 FT exon 326..595 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=2 FT intron 596..841 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=2 FT exon 842..1117 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=3 FT intron 1118..1704 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=3 FT exon 1705..1980 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=4 FT intron 1981..2101 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=4 FT exon 2102..2221 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=5 FT intron 2222..2660 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=5 FT exon 2661..2693 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=6 FT intron 2694..2800 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=6 FT exon 2801..2848 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=7 FT intron 2849..3012 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=7 FT exon 3013..3036 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" FT /number=8 FT 3'UTR 3018..3036 FT /gene="HLA-C" FT /allele="HLA-C*06:02:01:01var" XX SQ Sequence 3036 BP; 569 A; 886 C; 962 G; 619 T; 0 other; gcgtccccaa ttcccactcc cattgggtgt cgggttctag agaagccaat cagcgtatcc 60 gcagtcccgg ttctaaagtc cccagtcacc cacccggact cggattctcc ccagacgccg 120 agatgcgggt catggcgccc cgaaccctca tcctgctgct ctcgggagcc ctggccctga 180 ccgagacctg ggcctgtgag tgcggggttg ggagggaaac ggcctctgcg gagaggagcg 240 aggggcccgc ccggcgaggg cgcaggaccc ggggagccgc gcagggaggt gggtcgggcg 300 ggtctcagcc cctcctcgcc cccaggctcc cactccatga ggtatttcga caccgccgtg 360 tcccggcccg gccgcggaga gccccgcttc atctcagtgg gctacgtgga cgacacgcag 420 ttcgtgcggt tcgacagcga cgccgcgagt ccgagagggg agccccgggc gccgtgggtg 480 gagcaggagg ggccggagta ttgggaccgg gagacacaga agtacaagcg ccaggcacag 540 gctgaccgag tgaacctgcg gaaactgcgc ggctactaca accagagcga ggacggtgag 600 tgaccccggc ccggggcgca ggtcacgacc cctccccatc ccccacggac ggcccgggtc 660 gccccgagtc tcccggtctg agatccaccc cgaggctgcg gaacccgccc agaccctcga 720 ccggagagag ccccagtcac ctttacccgg tttcattttc agtttaggcc aaaatccccg 780 cgggttggtc ggggctgggg cggggctcgg gggacggggc tgaccacggg ggcggggcca 840 gggtctcaca ccctccagtg gatgtatggc tgcgacctgg ggcccgacgg gcgcctcctc 900 cgcgggtatg accagtccgc ctacgacggc aaggattaca tcgccctgaa cgaggacctg 960 cgctcctgga ccgccgcgga cacggcggct cagatcaccc agcgcaagtg ggaggcggcc 1020 cgtgaggcgg agcagtggag agcctacctg gagggcacgt gcgtggagtg gctccgcaga 1080 tacctggaga acgggaagga gacgctgcag cgcgcgggta ccaggggcag tggggagcct 1140 tccccatctc ctgtagatct cccgggatgg cctcccacga ggaggggagg aaaatgggat 1200 cagcgctaga atatcgccct cccttgaatg gagaatggga tgagttttcc tgagtttcct 1260 ctgagggccc cctctgctct ctaggacaat taagggatga agtccttgag gaaatggagg 1320 ggaagacagt ccctggaata ctgatcaggg gtcccctttg accactttga ccactgcagc 1380 agctgtggtc aggctgctga cctttctctc aggccttgtt ctctgcctca cgctcaatgt 1440 gtttaaaggt ttgattccag cttttctgag tccttcggcc tccactcagg tcaggaccag 1500 aagtcgctgt tcctccctca gagactagaa ctttccaatg aataggagat tatcccaggt 1560 gcctgtgtcc aggctggcgt ctgggttctg tgcccccttc cccaccccag gtgtcctgtc 1620 cattctcagg atggtcacat gggcgctgtt ggagtgtcgc aagagagata caaagtgtct 1680 gaattttctg actcttcccg tcagaacacc caaagacaca cgtgacccac catcccgtct 1740 ctgaccatga ggccaccctg aggtgctggg ccctgggctt ctaccctgcg gagatcacac 1800 tgacctggca gcgggatggc gaggaccaaa ctcaggacac cgagcttgtg gagaccaggc 1860 cagcaggaga tggaaccttc cagaagtggg cagctgtggt ggtgccttct ggagaagagc 1920 agagatacac gtgccatgtg cagcacgagg ggctgccaga gcccctcacc ctgagatggg 1980 gtaaggaggg ggatgagggg tcatgtgtct tctcagggaa agcagaagtc ctggagccct 2040 tcagccgggt cagggctgag gcttgggggt cagggcccct caccttcccc tcctttccca 2100 gagccatctt cccagcccac catccccatc gtgggcatcg ttgctggcct ggctgtcctg 2160 gctgtcctag ctgtcctagg agctgtgatg gctgttgtga tgtgtaggag gaagagctca 2220 ggtagggaag gggtgaggag tggggtctgg gttttcttgt cccactggga gtttcaagcc 2280 ccaggtagaa gtgtgcccca cctcgttact ggaagcacca tccacacatg ggccatccca 2340 gcctgggacc ctgtgtgcta gcacttactc tgttgtgaag cacatgacaa tgaaggacag 2400 atgtatcacc ttgatgatta tggtgttggg gtccttgatt ccagcattca tgagtcaggg 2460 gaaggtccct gctaaggaca gaccttagga gggcagttgc tccagaaccc acagctgctt 2520 tccccgtgtt tcctgatcct gccctgggtc tgcagtcata gttctggaaa cttctcttgg 2580 gtccaagact aggaggttcc cctaagatcg catggccctg cctcctccct gtcccctcac 2640 agggcatttt cttcccacag gtggaaaagg agggagctgc tctcaggctg cgtgtaagtg 2700 atggcggtgg gcgtgtggag gagctcaccc accccataat tcctcttgtc ccacatctcc 2760 tgcgggctct gaccaggtct ttttttttgt tctaccccag ccagcaacag tgcccagggc 2820 tctgatgagt ctctcatcgc ttgtaaaggt gagattctgg ggagctgaag tggtctgggg 2880 tggggcagag ggaaaaggcc taggtaatgg ggatcctttg attgggacgt ttcgaatgtg 2940 tggtgagctg ttcagagtgt catcacttac catgactgac ctgaatttgt tcatgactat 3000 tgtgttctgt agcctgagac agctgcctgt gtggga 3036 //