Dbfetch
ID MZ832291; SV 1; linear; genomic DNA; STD; HUM; 2982 BP. XX AC MZ832291; XX DT 16-AUG-2022 (Rel. 144, Created) DT 16-AUG-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens isolate 142419 MHC class I antigen (HLA-B) gene, HLA-B*08var DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-2982 RA Silva J.S., Dugonski M.E., Bicalho M.G.; RT ; RL Submitted (18-AUG-2021) to the INSDC. RL Genetica, Universidade Federal do Parana, Francisco H. dos Santos, 100, RL Curitiba, Parana 19071, Brazil XX DR MD5; bb79465b092777ba118f9831d3befdd1. XX CC ##Assembly-Data-START## CC Assembly Method :: GenDx NGSengine v. 2.22.0.22581 CC Assembly Name :: Classical Algorithm CC Coverage :: 200x CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2982 FT /organism="Homo sapiens" FT /isolate="142419" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>2982 FT /gene="HLA-B" FT /allele="HLA-B*08var" FT mRNA join(<1..357,486..755,1007..1282,1855..2130,2224..2340, FT 2782..2814,2921..>2982) FT /gene="HLA-B" FT /allele="HLA-B*08var" FT /product="MHC class I antigen" FT exon <1..357 FT /gene="HLA-B" FT /allele="HLA-B*08var" FT /number=1 FT 5'UTR <1..284 FT /gene="HLA-B" FT /allele="HLA-B*08var" FT CDS join(285..357,486..755,1007..1282,1855..2130,2224..2340, FT 2782..2814,2921..2964) FT /codon_start=1 FT /gene="HLA-B" FT /allele="HLA-B*08var" FT /product="MHC class I antigen" FT /protein_id="UUT43537.1" FT /translation="MLVMAPRTVLLLLSAALALTETWAGSHSMRYFDTAMSRPGRGEPR FT FISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIFKTNTQTDRESLRN FT LRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAARVAEQDRAYLEGTCVEWLRRYLENGKDTLERADPPKTHVTHHPISDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGK FT GGSYSQAACSDSAQGSDVSLTA" FT exon 486..755 FT /gene="HLA-B" FT /allele="HLA-B*08var" FT /number=2 FT exon 1007..1282 FT /gene="HLA-B" FT /allele="HLA-B*08var" FT /number=3 FT exon 1855..2130 FT /gene="HLA-B" FT /allele="HLA-B*08var" FT /number=4 FT exon 2224..2340 FT /gene="HLA-B" FT /allele="HLA-B*08var" FT /number=5 FT exon 2782..2814 FT /gene="HLA-B" FT /allele="HLA-B*08var" FT /number=6 FT exon 2921..>2982 FT /gene="HLA-B" FT /allele="HLA-B*08var" FT /number=7 FT 3'UTR 2965..>2982 FT /gene="HLA-B" FT /allele="HLA-B*08var" XX SQ Sequence 2982 BP; 551 A; 899 C; 941 G; 591 T; 0 other; gatcaggacg aagtcccagg tcccggacgg ggctctcagg gtctcaggct ccgagggccg 60 cgtctgcaat ggggaggcgc agcgttgggg attccccact cccctgagtt tcacttcttc 120 tcccaacttg tgtcgggtcc ttcttccagg atactcgtga cgcatcccca cttcccactc 180 ccattgggtg tcggatatct agagaagcca atcagcgtcg ccggggtccc agttctaaag 240 tccccacgca cccacccgga ctcagagtct cctcagacgc cgagatgctg gtcatggcgc 300 cccgaaccgt cctcctgctg ctctcggcgg ccctggccct gaccgagacc tgggccggtg 360 agtgcgggtc gggagggaaa tggcctctgc cgggaggagc gaggggaccg caggcggggg 420 cgcaggacct gaggagccgc gccgggagga gggtcgggcg ggtctcagcc cctcctcgcc 480 cccaggctcc cactccatga ggtatttcga caccgccatg tcccggcccg gccgcgggga 540 gccccgcttc atctcagtgg gctacgtgga cgacacgcag ttcgtgaggt tcgacagcga 600 cgccgcgagt ccgagagagg agccgcgggc gccgtggata gagcaggagg ggccggagta 660 ttgggaccgg aacacacaga tcttcaagac caacacacag actgaccgag agagcctgcg 720 gaacctgcgc ggctactaca accagagcga ggccggtgag tgaccccggc ccggggcgca 780 ggtcacgact ccccatcccc cacggacggc ccgggtcgcc ccgagtctcc gggtccgaga 840 tccgcctccc tgaggccgcg ggacccgccc agaccctcga ccggcgagag ccccaggcgc 900 gtttacccgg tttcattttc agttgaggcc aaaatccccg cgggttggtc ggggcggggc 960 ggggcggggc tcggggggac ggggctgacc gcggggccgg ggccagggtc tcacaccctc 1020 cagagcatgt acggctgcga cgtggggccg gacgggcgcc tcctccgcgg gcataaccag 1080 tacgcctacg acggcaagga ttacatcgcc ctgaacgagg acctgcgctc ctggaccgcg 1140 gcggacaccg cggctcagat cacccagcgc aagtgggagg cggcccgtgt ggcggagcag 1200 gacagagcct acctggaggg cacgtgcgtg gagtggctcc gcagatacct ggagaacggg 1260 aaggacacgc tggagcgcgc gggtaccagg ggcagtgggg agccttcccc atctcctata 1320 ggtcgccggg gatggcctcc cacgagaaga ggaggaaaat gggatcagcg ctagaatgtc 1380 gccctccctt gaatggagaa tggcatgagt tttcctgagt ttcctctgag ggccccctct 1440 tctctctaga caattaaggg atgacgtctc tgaggaaatg gaggggaaga cagtccctag 1500 aatactgatc aggggtcccc tttgacccct gcagcagcct tgggaaccgt gacttttcct 1560 ctcaggcctt gttctctgcc tcacactcag tgtgtttggg gctctgattc cagcacttct 1620 gagtcacttt acctccactc agatcaggag cagaagtccc tgttccccgc tcagagactc 1680 gaactttcca atgaatagga gattatccca ggtgcctgca tccgctggtg tctgggttct 1740 gtgccccttc cccaccccag gtgtcctgtc cattctcagg ctggtcacat gggtggtcct 1800 agggtgtgcc atgagagatg caaagcgcct gaattttctg actcttccca tcagaccccc 1860 caaagacaca cgtgacccac caccccatct ctgaccatga ggccaccctg aggtgctggg 1920 ccctgggctt ctaccctgcg gagatcacac tgacctggca gcgggatggc gaggaccaaa 1980 ctcaggacac tgagcttgtg gagaccagac cagcaggaga tagaaccttc cagaagtggg 2040 cagctgtggt ggtgccttct ggagaagagc agagatacac atgccatgta cagcatgagg 2100 ggctgccgaa gcccctcacc ctgagatggg gtaaggaggg ggatgagggg tcatatctct 2160 tctcagggaa agcaggagcc cttcagcagg gtcagggccc ctcatcttcc cctcctttcc 2220 cagagccgtc ttcccagtcc accgtcccca tcgtgggcat tgttgctggc ctggctgtcc 2280 tagcagttgt ggtcatcgga gctgtggtcg ctgctgtgat gtgtaggagg aagagctcag 2340 gtagggaagg ggtgaggggt ggggtctggg ttttcttgtc ccactggggg tttcaagccc 2400 caggtagaag tgttccctgc ctcattactg ggatgcagca tccacacagg ggctaacgca 2460 gcctgggacc ctgtgtgcca gcacttactc ttttgtgcag cacatgtgac aatgaaggac 2520 ggatgtatca ccttggtggt tgtggtgttg gggtcctgat tccagcattc atgagtcagg 2580 ggaaggtccc tgctaaggac agaccttagg agggcagttg gtccaggacc cacacttgct 2640 ttcctcgtgt ttcctgatcc tgccttgggt ctgtagtcat acttctggaa attccttttg 2700 ggtccaagac gaggaggttc ctctaagatc tcatggccct gcttcctccc agtcccctca 2760 cagggcattt tcttcccaca ggtggaaaag gagggagcta ctctcaggct gcgtgtaagt 2820 gatgggggtg ggagtgtgga ggagctcacc caccccataa ttcctcctgt cccacgtctc 2880 ctgcgggctc tgaccaggtc ctgtttttgt tctactccag gcagcgacag tgcccagggc 2940 tctgatgtgt ctctcacagc ttgaaaaggt gagattcttg gg 2982 //