Dbfetch
ID MZ682274; SV 1; linear; genomic DNA; STD; HUM; 2991 BP. XX AC MZ682274; XX DT 25-AUG-2021 (Rel. 144, Created) DT 05-OCT-2022 (Rel. 144, Last updated, Version 2) XX DE Homo sapiens isolate 345718038 MHC class I protein (HLA-B) gene, DE HLA-B*13var allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-2991 RX PUBMED; 35484931. RA Khor S.S., Omae Y., Tokunaga K.; RT "HLA-B*13:01:01:09, a variant of HLA-B*13:01:01:01, detected in a Japanese RT individual"; RL HLA 100(3):263-264(2022). XX RN [2] RP 1-2991 RA Khor S.-S., Ito I., Sato T., Tokunaga K.; RT ; RL Submitted (30-JUL-2021) to the INSDC. RL Department of Human Genetics, The University of Tokyo, Hongo 7-3-1, Bunkyo RL Ward, Tokyo 1130033, Japan XX DR MD5; dc19191e2eab2a620adc9838384d5c82. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.18.0.17625 CC Sequencing Technology :: PacBio CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2991 FT /organism="Homo sapiens" FT /isolate="345718038" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>2991 FT /gene="HLA-B" FT /allele="HLA-B*13var" FT mRNA join(<1..357,487..756,1002..1277,1853..2128,2233..2349, FT 2791..2823,2930..>2991) FT /gene="HLA-B" FT /allele="HLA-B*13var" FT /product="MHC class I protein" FT exon <1..357 FT /gene="HLA-B" FT /allele="HLA-B*13var" FT /number=1 FT 5'UTR <1..284 FT /gene="HLA-B" FT /allele="HLA-B*13var" FT CDS join(285..357,487..756,1002..1277,1853..2128,2233..2349, FT 2791..2823,2930..2973) FT /codon_start=1 FT /gene="HLA-B" FT /allele="HLA-B*13var" FT /product="MHC class I protein" FT /protein_id="QZA66426.1" FT /translation="MRVTAPRTLLLLLWGAVALTETWAGSHSMRYFYTAMSRPGRGEPR FT FITVGYVDDTQFVRFDSDATSPRMAPRAPWIEQEGPEYWDRETQISKTNTQTYRENLRT FT ALRYYNQSEAGSHIIQRMYGCDLGPDGRLLRGHNQLAYDGKDYIALNEDLSSWTAADTA FT AQITQLKWEAARVAEQLRAYLEGECVEWLRRYLENGKETLQRADPPKTHVTHHPISDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGK FT GGSYSQAACSDSAQGSDVSLTA" FT exon 487..756 FT /gene="HLA-B" FT /allele="HLA-B*13var" FT /number=2 FT exon 1002..1277 FT /gene="HLA-B" FT /allele="HLA-B*13var" FT /number=3 FT exon 1853..2128 FT /gene="HLA-B" FT /allele="HLA-B*13var" FT /number=4 FT variation 2210 FT /gene="HLA-B" FT /replace="c" FT /note="C2210T" FT exon 2233..2349 FT /gene="HLA-B" FT /allele="HLA-B*13var" FT /number=5 FT exon 2791..2823 FT /gene="HLA-B" FT /allele="HLA-B*13var" FT /number=6 FT exon 2930..>2991 FT /gene="HLA-B" FT /allele="HLA-B*13var" FT /number=7 FT 3'UTR 2974..>2991 FT /gene="HLA-B" FT /allele="HLA-B*13var" XX SQ Sequence 2991 BP; 558 A; 897 C; 934 G; 602 T; 0 other; gatcaggacg aagtcccagg tcccggacgg ggctctcagg gtctcaggct ccgagagcct 60 tgtctgcatt ggggaggcgc agcgttgggg attccccact cccacgagtt tcacttcttc 120 tcccaaccta tgtcgggtcc ttcttccagg atactcgtga cgcgtcccca attcccactc 180 ccattgggtg tcgggtgtct agagaagcca atcagtgtcg ccggggtccc agttctaaag 240 tccccacgca cccacccgga ctcagaatct cctcagacgc cgagatgcgg gtcacggcgc 300 cccgaaccct cctcctgctg ctctgggggg cagtggccct gaccgagacc tgggccggtg 360 agtgcgggat cgggagggaa atggcctctg tggggaggag cgaggggacc gcaggcgggg 420 gcgcaggacc cggggagccg cgccgggagg agggtctggc gggtctcagc ccctcctggc 480 ccccaggctc ccactccatg aggtatttct acaccgccat gtcccggccc ggccgcgggg 540 agccccgctt catcaccgtg ggctacgtgg acgacaccca gttcgtgagg ttcgacagcg 600 acgccacgag tccgaggatg gcgccccggg cgccatggat agagcaggag gggccggagt 660 attgggaccg ggagacacag atctccaaga ccaacacaca gacttaccga gagaacctgc 720 gcaccgcgct ccgctactac aaccagagcg aggccggtga gtgaccccgg cccggggcgc 780 aggtcacgac tccccatccc ccacggacgg cccgggtcgc cccgagtctc cgggtccgag 840 atccgcctcc ctgaggccgc gggacccgcc cagaccctcg accggcgaga gccccaggcg 900 cgtttacccg gtttcatttt cagttgaggc caaaatcccc gcgggttggt cggggcgggg 960 cggggctcgg gggacggggc tgaccgcggg gccggggcca gggtctcaca tcatccagag 1020 gatgtatggc tgcgacctgg ggccggacgg gcgcctcctc cgcgggcata accagttagc 1080 ctacgacggc aaggattaca tcgccctgaa cgaggacctg agctcctgga ccgcggcgga 1140 caccgcggct cagatcaccc agctcaagtg ggaggcggcc cgtgtggcgg agcagctgag 1200 agcctacctg gagggcgagt gcgtggagtg gctccgcaga tacctggaga acgggaagga 1260 gacgctgcag cgcgcgggta ccaggggcag tggggagcct tccccatctc ctataggtcg 1320 ccggggatgg cctcccacga gaagaggagg aaaatgggat cagcgctaga atgtcgccct 1380 cccttgaatg gagaatggca tgagttttcc tgagtttcct ctgagggccc cctcttctct 1440 ctaggacaat taagggatga cgtctctgag gaaatgtagg ggaagacagt ccctagaata 1500 ctgatcaggg gtcccctttg acccctgcag cagccttggg aaccgtgact tttcctctca 1560 ggccttgttc tctgcctcac actcagtgtg tttggggctc tgattccagc acttctgagt 1620 cactttacct ccactcagat caggagcaga agtccctgtt ccccgctcag agactcgaac 1680 tttccaatga ataggagatt atcccaggtg cctgcgtcca ggctggtgtc tgggttctgt 1740 gccccttccc caccccaggt gtcctgtcca ttctcaggct ggtcacatgg gtggtcctag 1800 ggtgtcccat gagagatgca aagcgcctga attttctgac tcttcccatc agacccccca 1860 aagacacacg tgacccacca ccccatctct gaccatgagg ccaccctgag gtgctgggcc 1920 ctgggcttct accctgcgga gatcacactg acctggcagc gggatggcga ggaccaaact 1980 caggacactg agcttgtgga gaccagacca gcaggagata gaaccttcca gaagtgggca 2040 gctgtggtgg tgccttctgg agaagagcag agatacacat gccatgtaca gcatgagggg 2100 ctgccgaagc ccctcaccct gagatggggt aaggaggggg atgaggggtc atatctcttc 2160 tcagggaaag caggagccct tctggagccc ttcagcaggg tcagggccct tcatcttccc 2220 ctcctttccc agagccatct tcccagtcca ccgtccccat cgtgggcatt gttgctggcc 2280 tggctgtcct agcagttgtg gtcatcggag ctgtggtcgc tgctgtgatg tgtaggagga 2340 agagctcagg tagggaaggg gtgaggggtg gggtctgggt tttcttgtcc cactgggggt 2400 ttcaagcccc aggtagaagt gttccctgcc tcattactgg gaagcagcat gcacacaggg 2460 gctaacgcag actgggaccc tgtgtgccag cacttactct tttgtgcagc acatgtgaca 2520 atgaagcacg gatgtatcac cttgatggtt gtggtgttgg ggtcctgatt ccagcattca 2580 tgagtcaggg gaaggtccct gctaaggaca gaccttagga gggcagttgg tccaggaccc 2640 acacttgctt tcctcgtgtt tcctgatcct gccctgggtc tgtagtcata cttctggaaa 2700 ttccttttgg gtccaagact aggaggttcc tctaagatct catggccctg cttcctccca 2760 gtcccctcac aggacatttt cttcccacag gtggaaaagg agggagctac tctcaggctg 2820 cgtgtaagtg gtgggggtgg gagtgtggag gagctcaccc accccataat tcctcctgtc 2880 ccacgtctcc tgcgggctct gaccaggtcc tgtttttgtt ctactccagg cagcgacagt 2940 gcccagggct ctgatgtgtc tctcacagct tgaaaaggtg agattcttgg g 2991 //