Dbfetch
ID MZ374078; SV 1; linear; genomic DNA; STD; HUM; 6004 BP. XX AC MZ374078; XX DT 13-JUL-2021 (Rel. 144, Created) DT 13-JUL-2021 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens isolate 1325273 MHC class II antigen (HLA-DQB1) gene, DE HLA-DQB1*06:02var allele, partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6004 RA Gomez-Massa E.; RT ; RL Submitted (01-JUN-2021) to the INSDC. RL Histocompatibility and Immunogenetics Laboratory, Blood and Tissue Bank, RL Edifici Frederic Duran i Jorda. Passeig del Taulat 106-116, Barcelona RL 08005, Spain XX DR MD5; d65d18b52095db1a2ef6e1f9fff7a1cf. XX CC ##Assembly-Data-START## CC Assembly Method :: GenDx (NGS engine) v. IMGT 3.43.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6004 FT /organism="Homo sapiens" FT /isolate="1325273" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <35..>5295 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02var" FT mRNA join(<35..143,1575..1844,4394..4675,5185..>5295) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02var" FT /product="MHC class II antigen" FT CDS join(35..143,1575..1844,4394..4675,5185..>5295) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:02var" FT /product="MHC class II antigen" FT /protein_id="QXH29471.1" FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKG FT MCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTR FT AELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQK" XX SQ Sequence 6004 BP; 1531 A; 1341 C; 1484 G; 1648 T; 0 other; gttgactacc actgcttttc ccttcgtctc agttatgtct tggaagaagg ctttgcggat 60 ccccggagac cttcgggtag caactgtcac cttgatgctg gcgatgctga gctccctact 120 ggctgagggc agagactctc ccggtaagtg cagggcagct gctctccaga gccgccactc 180 tgggaacagg ctctccttgg gctggggtat gggggatggt gatctctatg atcttggaca 240 caatctttca tcaacatttc ctctctcttg ggaaagaaag ctatgttgca ttcccattta 300 tcttttagtg atgagatgag gacaatccaa tccccatcct acaggcttaa gcctggaaga 360 ggaggagaga ggagagaaag aggagataaa gtgtacattt actaccagcg ataggacaaa 420 gtgagcatgg ggttattttt gaagatatga atttctccaa agacacagca ggatttgtca 480 tttaggcgtg ccccaagact gcctggactt aggattatga gatcctgcat tggaaaatgt 540 gaggcagcaa tggtgtctgt agtctctgta tttgaggaaa atttgtctct attcctgacc 600 gagtggagca tttgtggagg caaaatcttg gtgctgaggg aagctgactg gctgaccaca 660 gagagggagt cttcgggttt cactgattta tgggcaaatg gtgacttgag tgggattcag 720 agacccgagt taatggtgga ctgaatttag taggaaggag gatgtaaaga agggaaataa 780 cacatattgt gaaaccactc acttcagaca gaacaatact ttatataact tctctctcac 840 tccttctaac atcctgtgtg tagatatcat gattttcttt tacacaatta tacttgtgat 900 atggatattc tgttacataa cctgcccaaa ctggtgactg ccacagttta attggaatct 960 agtttatcaa attcaaaagc ttgtgctctt tccatgaata aatgtctcta tctaggactc 1020 agaggtgtag gtcctttcca acatagaagg gagtgaacct caacgggact tgggagggta 1080 aatctaggca tgggaaggaa ggtattttac ccagggacca agagaatacg cgtgtcagaa 1140 cgaggccagg cttaattcct ggacctatct cgtcattccg ttgaactctc agatttatgt 1200 ggataacttt atctctgagg tatccaggag cttcatgaaa aatgggattt catgcgagaa 1260 cgccctgatc cctctaagtg cagaggtgca tgtaaaatca gcccgactgc ctcttcgctg 1320 ggttcacagg ctcaggcagg gacagggctt tcctcccttt cctggatgta ggaaggcaga 1380 ttccagaagc ccgcaaagaa ggcgggcaga gctgggcaga gccgccggga ggatcccagg 1440 tctggagcgc caggcacggg cgggcgggaa ctggaggtcg cgcgggcggt tccacagctc 1500 caggccgggt cagggcggcg gctgcggggg cggccgggct ggggcctgac tgaccggccg 1560 gtgattcccc gcagaggatt tcgtgttcca gtttaagggc atgtgctact tcaccaacgg 1620 gacggagcgc gtgcgtcttg tgaccagata catctataac cgagaggagt acgcgcgctt 1680 cgacagcgac gtgggggtgt accgcgcggt gacgccgcag gggcggcctg atgccgagta 1740 ctggaacagc cagaaggaag tcctggaggg gacccgggcg gagttggaca cggtgtgcag 1800 acacaactac gaggtggcgt tccgcgggat cttgcagagg agaggtgagc gtcgtcgccc 1860 ctccgtgagg cccacccttg gccgagaccc cgagtttctg tgccgggagg ggcgatgggg 1920 gcgaggtctc tgaaatctga gcccagttca ttccacccca ggggaaagga ggcggcggcg 1980 gggtggtggg ggcaggtgca tcggaggggc ggggacctag ggcagagcag ggggacaagc 2040 agagttggcc aggctgccta gtgtcccccc cagcctcccc gtccgtcggc ctcgtcctcc 2100 gctctgcacg tttctcgcct cgtgccttat gtgtttgcct cctcgtacct taccttcgct 2160 aagcagttct ctctgccccc agtgcccacc ctcttcccct gcccgccggc ctcgctagca 2220 ctgccccacc cagcaaggcc cacgtgcgca gcttgcgccg caggaagctt caggcttggc 2280 ctggtggagt tagggctgcc ccacagctgc gcgcagggca tccagcaatt acagttgcga 2340 aataagatat tttgactttt tggcttcaaa tcattattca tcgtaattct gttttcttaa 2400 atggctacca ctaatggcgg agatctttga ggcgagagac tgtttaatta ttgcatgcct 2460 ggtacctgac acattgactg gtatgtggtg tgagctcaat gatcttctgt taaattcatg 2520 aataaatgta ctcagctgcc aatccagtta ggttcaagaa aaaaacagag gcttacaaat 2580 gaactttatc aattattttc taacattttg cttaatgctt tcaagtaaac tcttactgac 2640 ttggatctta atagaatttg tgaatacaaa gtctgaggaa aatgtgtttg ctaaaaataa 2700 aaacaatgct tgaatgatgt tgtaaggcag agttttaatt tcttagaaaa gctgaacaaa 2760 tagcactatg caaagatcag aagtttggga ataaataggt tgaagctatt aaattattgg 2820 ataaaaatag tttcaggttg cttttggcct aggttatccc ctccccccca tcactatcca 2880 cttcaggaat aaacattctg aaagtcaatt ttacccattc aggaagcact tatttctaga 2940 cagttgcctt atcaaatacc atctatgtta tgtcatttaa tctcacagct acctgtgcat 3000 tagagattag catcaccact ttatatatcc taatattggt acatgataaa cactttaagt 3060 aatcagccca caattactca ccaagatctt aagcctccca aagtacacaa cattcttatg 3120 ttcctcacta cacatatgta gagtctaagg gatgtaaggc cttgttaaag ccagttttga 3180 ccagaagcag caatgagtct attcctgttt gttctgtgtg ttaatgcggc attgaaaatt 3240 catgattaat caatccctag tctgaccccg gtgttatcta tgcaggttca caaaactttt 3300 agtttgcttt acactccctt gccttctttt gactcacatc ctaatgccag caagtactta 3360 tatttttgct atttcagttt tatttccata aaatttattt tatcatcttt tctcataaat 3420 ttgtgccctc tatttttact cccagtctgt tgaagatgaa caaatcttat aaggccacat 3480 agctgactct gatttcagtt ggcctccagg aaggagaacc taaagaaaag ttcaagtcca 3540 agcagaaacc atgattcctt ccggatgatg gctcaagagt gccatttaat tggggtgcca 3600 cctgctgacc tcagcaaatc ccagttatat gtatatgttc acattacagg ctcattagcc 3660 caggccgacc tctgcacgga tctcagaata ttttctgtgg agaacataca cgataatgtc 3720 tgatttcaga acaagaaagt aattgtcaat agcaaggaaa tggagtaggg tagacagcta 3780 gtaattaaac tcacttgtgc gttaaaaaga aattaaggaa aaaaagaaaa tgagagaaca 3840 tattactaaa taaagaaagc acacattaaa tatttgctat agtttcacac taagagaata 3900 aaggaaatgt gataaagtgg cctaaaagga aaggatgaga tgtgtaaaag aggcggggaa 3960 agatgtgtca ttttttttac tatgagcagc aatctgagaa gataaaggaa ttgagttgtg 4020 gacaaacatg atgtttgatc aagggttatt tgttttgaag gcctgcctac ttttttttca 4080 aatattacaa acttttgaaa taacattcta cttttttttc aaatattaca aacttttgaa 4140 ataacattct ttttgttttt tgctgtctgt tactagattg cacattctat aaatgcaggg 4200 accatagtat gttatttatc tttgaattct cagtgattgt caaatttata tttgttgaat 4260 gaaccttaat ccaagacttc gactccaggt atctttccac tctggtccaa ggagggatcc 4320 ttcctcatgg tagacgtggt gtgtgttctc acatctcact cctatgtctt ttcctgtctg 4380 ttactgccct cagtggagcc cacagtgacc atctccccat ccaggacaga ggccctcaac 4440 caccacaatc tgctggtctg ctcggtgaca gatttctatc caggccagat caaagtccgg 4500 tggtttcgga atgatcagga ggagacagcc ggcgttgtgt ccacccccct tattaggaat 4560 ggtgactgga ctttccagat cctggtgatg ctggaaatga ctccccagcg tggagatgtc 4620 tacacctgcc acgtggagca ccccagcctc cagagcccca tcaccgtgga gtggcgtaag 4680 gggatattga gtttctgtta ctatgggccc acaagacaaa gagctccttc tgacccattc 4740 cttcccatct cttatccctg atgtcactac tgagctggga atcacaggag actagagcac 4800 ctcttgctcc atggcaagtg catcagaaga atcctggtct catcaccttt ccagatgcta 4860 gggaaattac tctacatact gttgctctga atcccagtcc tgatagctct gagggactga 4920 ttcttagggc tggtgactgg gatcttaggg tctaaggtta tggatgagtt cttgaagagc 4980 agagatttgc ttccccactc tctcacctat tcactgtatc caaggaccta ttggctggtc 5040 tttcccctcc ttaggggtgg tctgaatgga gaactaggtt cctttgatgc cttcaccttc 5100 tgcacctcag actggacttc aactcctcag cagggatgct atggggtgtg gggacaaaca 5160 cagacactca gttctgctct ttaggggctc agtctgaatc tgcccagagc aagatgctga 5220 gtggcgttgg aggcttcgtg ctggggctga tcttccttgg gctgggcctt atcatccgtc 5280 aaaggagtca gaaaggtgag gaaccccagg ggaaaagggg aagatgggct gtgacccaga 5340 ccctctgttc agagtggtcc tgtctgtaga ttagctcttt cctcctgacc ctgagaagaa 5400 gtgcgaggag acaggacaag atgggaggag gcattggaat ctgattttac tggttgaaag 5460 gtagcgctgt cacagagctg actgatagag cttattccag ggcatcctta ccattcatca 5520 ttgtctcact ggctcctttc caaaagcttc ctccattaag agggtcagag cctcagcttc 5580 ctttctttct agtgacaatt tcctttgttt taggggattt taaattaggg tgctgaaggc 5640 ctggaagaac atgggtggga agagaatgta actctaagtc atgtgtgtca ttttcctttg 5700 gggtgagaga gtggctgttt gtgtaatgag acctttctct gcataacttc cttttgtaag 5760 acctcaaggg cctccaccag caggtaatat ttcagccatg atccagtgtg gggaggcaca 5820 ggtataagag ggaagagcat gagctgagtg tacctgacca cagtggtcca tgttcatggc 5880 ctatttgctg ctatgaggat caagacttag gggagaagtt tgccagtttc taggaatctc 5940 cagacattgt tccccagaac caagccttaa ctttggtggc atcttcttgt gaaatgtgga 6000 gcca 6004 //