Dbfetch
ID MZ054391; SV 1; linear; genomic DNA; STD; HUM; 4303 BP. XX AC MZ054391; XX DT 04-AUG-2022 (Rel. 144, Created) DT 05-AUG-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DPB1) gene, HLA-DPB1*1219:01 allele, DE exon 2 and partial cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4303 RX PUBMED; 34255436. RA Scherer V., Flesch B.K.; RT "Characterization of the novel HLA-DPB1*1219:01 allele by next-generation RT sequencing"; RL HLA 98(3):256-257(2021). XX RN [2] RP 1-4303 RA Flesch B.K., Scherer V.; RT ; RL Submitted (28-APR-2021) to the INSDC. RL Laboratory for Immunogenetics / HLA, German Red Cross Blood Service West, RL Burgweg 5-7, Bad Kreuznach 55543, Germany XX DR MD5; c0e72a7c607085a840e61c69acf1bcd7. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSEngine v. 2.20.2.19673 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4303 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /tissue_type="peripheral blood" FT /db_xref="taxon:9606" FT gene <1..>4303 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*1219:01" FT mRNA <152..>415 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*1219:01" FT /product="MHC class II antigen" FT CDS <152..>415 FT /codon_start=3 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*1219:01" FT /product="MHC class II antigen" FT /note="HLA-DP beta 1" FT /protein_id="UUC08083.1" FT /translation="NYLFQGRQECYAFNGTQRFLERYIYNREEFARFDSDVGEFRAVTE FT LGRPDEEYWNSQKDLLEEERAVPDRMCRHNYELVGPMTLQRR" FT exon 152..415 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*1219:01" FT /number=2 FT variation 343 FT /gene="HLA-DPB1" FT /replace="a" FT /note="Lys98Glu" XX SQ Sequence 4303 BP; 1176 A; 857 C; 1261 G; 1009 T; 0 other; gaccacagaa ctcggtacta ggaaaactcc tattttaaaa tccagccctg ggtgggaaga 60 tttgggaaga atcgttaata ttgagagaga gagggagaaa gaggattaga tgagagtggc 120 gcctccgctc atgtccgccc cctccccgca gagaattacc ttttccaggg acggcaggaa 180 tgctacgcgt ttaatgggac acagcgcttc ctggagagat acatctacaa ccgggaggag 240 ttcgcgcgct tcgacagcga cgtgggggag ttccgggcgg tgacggagct ggggcggcct 300 gatgaggagt actggaacag ccagaaggac ctcctggagg aggagcgggc agtgccggac 360 aggatgtgca gacacaacta cgagctggtc gggcccatga ccctgcagcg ccgaggtgag 420 tgagggcttt gggccggcgg tcccagggca gccccgcggg cccgtgccca gggcgcagga 480 gcagccgggt tggcctaagg gaccttagtg ccaagcggaa aggggacttt gggttgggga 540 ttcattgtgg ggagcccatc tggagcttgt caggggagcg agcgcgggga cctggactgg 600 gctgagcatg gagtgaggag gacgggagca gagagacccc cgggacttca tcaggcctgg 660 cagctgactg catgtggggt gagaaaagga ggccacagga cagcgcgcaa gggtgtggtg 720 tggagatgga ggtggagatg gcacagcagg ccacacagag aagaaacctg cagggagata 780 gctgggtttg aggtgcttga ggggcagatg ggtggtctga tgggcaggta gacagaaggg 840 tctgcagccg gggaggagac tgagatacat gagaccatcc agggagagag gacccagggg 900 gaagggcaaa ggactggatc ctgggaactg gacagttgtg atttggccaa gacagaaaag 960 cctgtgaaag agaccaaaaa aacccaagtg cagtgtgagg agaggcccgc agagaagagt 1020 cttggaagct gaggggaggt gacctcagca gcacagtgga cagcggtgcc agtgacttgg 1080 gaaggtcaga aaacagaaga tggaaagtgg gtttggaaac cagggagacc tggggagagc 1140 aggttggccg cagcggcagg agctggaatg ggagggggtg catgaggctg agtgtggcgc 1200 atcctcctcg gggctgagat ggattttact tgtcttgggt tccccacggc tggcacaggg 1260 cagtgtctga gttcattcat ctttttcctt caggaagtct gggtgtaaag ggatggagag 1320 aggtgaggtg tgtgcagtaa gaggatttct caaggatggg acaggaaggc cttggagctt 1380 tggcttcctc ctgtgaactt gtggggtggg gagcctggtg caccaacctg agggacctga 1440 gggagtagta tcaggatgtg ggattgagcc ctggaccttt tttctagaaa gaggaaaaaa 1500 atgaagggag gaggaggagg aagctgggga gatcacacct ttgattttct tgttcctgga 1560 aagtgaaagg aagttcacct gctaggagtg agaaggtgga cacactgggt ggggatgagg 1620 tgagtgacat gagcttagga aagttgctga ggtaattggt tgagagaggt gttcaaataa 1680 aagtaatgca attggcaaaa actgttacta agactttgta gaggcacaaa tcagtgacat 1740 ggcagcatct tctttcacag taatcaactg ccagattgca gggagccctg ataccagcct 1800 aaggagtgtg aatttctcct ctaggcccac aggtccccaa cctcactcct ccgaagactc 1860 tcctggagat catctgtgat gcgcagatac ccagactcac tgccccaaga ctcagattcc 1920 ctgggtaggg aggtcggggg atctctgctt gtaatcagct ccctagaggt tcccatgtag 1980 ccggataagt attgtcagaa cactgaagat ttttgaaaaa tgaaaaagag aaggttggag 2040 atgtgtcttc agaagactac taagggtgct gggtagagga gggaccagag gcagggagat 2100 gaggtaggaa actgctatta tttgtcaggg aaattgcaat caagaaatga gttagaacag 2160 ggaaaagaca gaggcagggg agaggtggaa gggggaggaa aggagtagtg acaattccag 2220 ggtgtatgct cacccaaatc tagaaataat tgagcaaatg ttttctgggc attagagaag 2280 gcaactagaa caaacaggaa tcctcgcctt ggtgaaatgt atttgaactg ggtcagaaat 2340 gaggccattg ggtatcaagc cttaactcca gcgccccctg gaggtcgctg atgtggctcc 2400 aggctgacct gctcctgtca aagaatattg agcaagatgc ctctcatgga atgttctggg 2460 accttaaaac agatacccaa gtattccccc tgatttcatg gttcccagaa gctctatggg 2520 gaagaaattg tacgtaattc acaactgaga tttagacata agttgaatag tgtaatggac 2580 gttgagttaa ccgaggtaat gaagtagtga gacacaggtg cccctgaaat aaactcacat 2640 tgagggaaga ggctgacaat gtggatcagt ctgtaaacaa ggcaaaaata caatagggag 2700 taagggttgt gtgtcagttc aagactgtac ttttacctgg cccagcgcca tgttggggta 2760 tttgtgttct ccaggaagta gaaaggaaag aactgagtga ttagggacct agaagactaa 2820 tctgagacat tcctcttgat gaactgttct ctagggtagt cctctgaaag agctgttctc 2880 tagtggatct ccctgaatga actgttctct aggagcactt gacccttttc tgtgtttgtt 2940 ttttgttttg tgtttgtgtt tgtttttgag acaggttctc gctctgtctc ctaggctgga 3000 gtgctgtggc gccatcatga ctcactgcag cctcaacctc ctgggctcaa gtgatcctcc 3060 tgcctcaacc tcccatgtag ctagaactac agatacatgt accaccatgt ctggctaatt 3120 tatttttctt tttagagatg ggttctcact atgttgccca ggctggtctc gaaaccctgg 3180 gctcaagtga tcctcacgcc tcagcctccc aaagtgctaa gattataggc atgaccacca 3240 tgcctggcct tttctgcctt ccgagaagga aaaaggtact ggtggcagag atccaaaaga 3300 aaagttgcca gtggcagtgt ggaaattgac ctgagaacaa cagaacaagc tggggcacaa 3360 atgcaaagat gcagagggag gcaacatctg gttatctgtg agaccttcat gggacctgaa 3420 gacacatcct tttggaaaag gatgggattt ctactactta agcatgtagg ggctcaggat 3480 attatgtaaa tatgaagatt ttgagttttt gtaggtaagg taaaaaaaat acctaggtta 3540 tttacagaat aagacatgtc aagctctctt cattttcttt gtactttcat gaaataaagg 3600 tattagatta acaggccacc ataatgccat tgtctgtata tcttaatttc aagatattat 3660 ttgagtaaat tttgcatcct ttgtatcaag atagaacttt gaaaagacag gtaatttcac 3720 agttgattaa atattctttg cccaaattac ttttggttaa aatttctcct atatgtgcta 3780 cagagtgcaa actctgtctc cctgccattc cgctatatac ttactaatta ttgttttatt 3840 caagatcatg catgctctac ttgaaggtct atcttttcag tgctaccctt acccactagc 3900 ctaatcacat tatatctatt ttcaacatct aggaatcaat tacatagtga acatgcctaa 3960 gaaataataa tctgggcaga tgcagtggct caggcctgta atcccagcac tttgagaggc 4020 tgagcgggtg gatcacttga ggtcaggagt tggtcaagtg ctcctagaga accagcctga 4080 ccaacatgga gaaacctcgt ctctactgat aatacaaaaa ttagccaggt gagatggcag 4140 gcacctataa tcccagctat tcgggaggct gaggaaggag aattgcttga acccctgagg 4200 tggaggttgc agtgagccaa tattgcacca ctgcattcca gacttggcaa cagagcgaca 4260 ctccacctca acaaaaagaa agaaagagcg agattacgtc tca 4303 //