Dbfetch
ID MW717895; SV 1; linear; genomic DNA; STD; HUM; 4090 BP. XX AC MW717895; XX DT 03-SEP-2021 (Rel. 144, Created) DT 03-SEP-2021 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class I protein (HLA-B) gene, HLA-B*55:02:01:01v2var DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4090 RA Khor S.-S., Ito I., Sato T., Tokunaga K.; RT ; RL Submitted (08-MAR-2021) to the INSDC. RL Department of Human Genetics, The University of Tokyo, Hongo 7-3-1, Bunkyo RL Ward, Tokyo 1130033, Japan XX DR MD5; 9e2926319dba4a183ba18ff1a298d902. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.18.0.17625 CC Sequencing Technology :: PacBio CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4090 FT /organism="Homo sapiens" FT /isolate="H320" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>4090 FT /gene="HLA-B" FT /allele="HLA-B*55:02:01:01v2var" FT mRNA join(<1..357,486..755,1001..1276,1852..2127,2232..2348, FT 2790..2822,2929..>4090) FT /gene="HLA-B" FT /allele="HLA-B*55:02:01:01v2var" FT /product="MHC class I protein" FT exon <1..357 FT /gene="HLA-B" FT /allele="HLA-B*55:02:01:01v2var" FT /number=1 FT 5'UTR <1..284 FT /gene="HLA-B" FT /allele="HLA-B*55:02:01:01v2var" FT CDS join(285..357,486..755,1001..1276,1852..2127,2232..2348, FT 2790..2822,2929..2972) FT /codon_start=1 FT /gene="HLA-B" FT /allele="HLA-B*55:02:01:01v2var" FT /product="MHC class I protein" FT /protein_id="QZF74746.1" FT /translation="MRVTAPRTLLLLLWGALALTETWAGSHSMRYFYTAMSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRN FT LRGYYNQSEAGSHTWQTMYGCDLGPDGRLLRGHNQLAYDGKDYIALNEDLSSWTAADTA FT AQITQRKWEAARVAEQLRAYLEGTCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRRKSSGGK FT GGSYSQAASSDSAQGSDVSLTA" FT exon 486..755 FT /gene="HLA-B" FT /allele="HLA-B*55:02:01:01v2var" FT /number=2 FT exon 1001..1276 FT /gene="HLA-B" FT /allele="HLA-B*55:02:01:01v2var" FT /number=3 FT exon 1852..2127 FT /gene="HLA-B" FT /allele="HLA-B*55:02:01:01v2var" FT /number=4 FT exon 2232..2348 FT /gene="HLA-B" FT /allele="HLA-B*55:02:01:01v2var" FT /number=5 FT exon 2790..2822 FT /gene="HLA-B" FT /allele="HLA-B*55:02:01:01v2var" FT /number=6 FT exon 2929..>4090 FT /gene="HLA-B" FT /allele="HLA-B*55:02:01:01v2var" FT /number=7 FT 3'UTR 2973..>4090 FT /gene="HLA-B" FT /allele="HLA-B*55:02:01:01v2var" FT variation 3163^3164 FT /gene="HLA-B" FT variation 3192 FT /gene="HLA-B" FT /note="T3192C" FT variation 3407 FT /gene="HLA-B" FT /note="C3407T" XX SQ Sequence 4090 BP; 768 A; 1150 C; 1247 G; 925 T; 0 other; gatcaggacg aagtcccatg tcccggacgg ggctctcagg gtctcaggct ccgagggccg 60 cgtctgcatt ggggaggcgc agcgttgggg attccccact cccacgagtt tcacttcttc 120 tcccaaccta tgtcgggtcc ttcttccagg atactcgtga cgcgtcccca tttcccactc 180 ccattgggtg tcgggtgtct agagaagcca atcagtgtcg ccggggtccc agttctaaag 240 tccccacgca cccacccgga ctcagagtct cctcagacac cgagatgcgg gtcacggcac 300 cccgaaccct cctcctgctg ctctgggggg ccctggccct gaccgagacc tgggccggtg 360 agtgcgggtc gggagggaaa tggcctctgt ggggaggagc gaggggaccg caggcggggg 420 cgcaggaccc ggggagccgc gccgggagga gggtctggcg ggtctcagcc cctcctcgcc 480 cccaggctcc cactccatga ggtatttcta caccgccatg tcccggcccg gccgcgggga 540 gccccgcttc atcgcagtgg gctacgtgga cgacacgcag ttcgtgaggt tcgacagcga 600 cgccgcgagt ccgagagagg agccgcgggc gccgtggata gagcaggagg ggccggagta 660 ttgggaccgg aacacacaga tctacaaggc ccaggcacag actgaccgag agagcctgcg 720 gaacctgcgc ggctactaca accagagcga ggccggtgag tgaccccggc ccggggcgca 780 ggtcacgact ccccatcccc cacgtacggc ccgggtcgcc ccgagtctcc gggtccgaga 840 tccgcctccc tgaggccgcg ggacccgccc agaccctcga ccggcgagag ccccaggcgc 900 gtttacccgg tttcattttc agttgaggcc aaaatccccg cgggttggtc ggggcggggc 960 ggggctcggg ggacggggct gaccgcgggg ccggggccag ggtctcacac ttggcagacg 1020 atgtatggct gcgacctggg gccggacggg cgcctcctcc gcgggcataa ccagttagcc 1080 tacgacggca aggattacat cgccctgaac gaggacctga gctcctggac cgcggcggac 1140 accgcggctc agatcaccca gcgcaagtgg gaggcggccc gtgtggcgga gcagctgaga 1200 gcctacctgg agggcacgtg cgtggagtgg ctccgcagat acctggagaa cgggaaggag 1260 acgctgcagc gcgcgggtac caggggcagt ggggagcctt ccccatctcc tataggtcgc 1320 cggggatggc ctcccacgag aagaggagga aaatgggatc agcgctagaa tgtcgccctc 1380 ccttgaatgg agaatggcat gagttttcct gagtttcctc tgagggcccc ctcttctctc 1440 taggacaatt aagggatgac gtctctgagg aaatggaggg gaagacagtc cctagaatac 1500 tgatcagggg tcctctttga cccctgcagc agccttggga accgtgactt ttcctctcag 1560 gccttgttct ctgcctcaca ctcagtgtgt ttggggctct gattccagca cttctgagtc 1620 actttacctc cactcagatc aggagcagaa gtccctgttc cccgctcaga gactcgaact 1680 ttccaatgaa taggagatta tcccaggtgc ctgcgtccag gctggtgtct gggttctgtg 1740 ccccttcccc accccaggtg tcctgtccat tctcaggctg gtcacatggg tggtcctagg 1800 gtgtcctatg agagatgcaa agcgcctgaa ttttctgact cttcccatca gaccccccaa 1860 agacacacgt gacccaccac cccatctctg accatgaggc caccctgagg tgctgggccc 1920 tgggcttcta ccctgcggag atcacactga cctggcagcg ggatggcgag gaccaaactc 1980 aggacactga gcttgtggag accagaccag caggagatag aaccttccag aagtgggcag 2040 ctgtggtggt gccttctgga gaagagcaga gatacacatg ccatgtacag catgaggggc 2100 tgccgaagcc cctcaccctg agatggggta aggaggggga tgaggggtca tatctcttct 2160 cagggaaagc aggagccctt ctggagccct tcagcagggt cagggcccct cgtcttcccc 2220 tcctttccca gagccatctt cccagtccac catccccatc gtgggcattg ttgctggcct 2280 ggctgtccta gcagttgtgg tcatcggagc tgtggtcgct actgtgatgt gtaggaggaa 2340 gagctcaggt agggaagggg tgaggggtgg ggtctgggtt ttcttgtccc actgggggtt 2400 tcaagcccca ggtagaagtg ttccctgcct cattactggg aagcagcatc cacacagggg 2460 ctaatgcagc ctgggaccct gtgtgccagc acttactctt ttgtgcagca catgtgacaa 2520 tgaaggacgg atgtatcacc ttgatggttg tggtgttggg gtcctgattt cagcattcat 2580 gagtcagggg aaggtccctg ctaaggacag accttaggag ggcagttggt ccaggaccca 2640 cacttgcttt cctcgtgttt cctgatcctg ccttgggtct gtagtcatac ttctggaaat 2700 tccttttggg tccaagacga ggaggttcct ctaagatctc atggccctgc ttcctcccag 2760 tcccctcaca ggacattttc ttcccacagg tggaaaagga gggagctact ctcaggctgc 2820 gtgtaagtgg tgggggtggg agtgtggagg agctcaccca ccccataatt cctcctgtcc 2880 cacgtctcct gcgggctctg accaggtcct gtttttgttc tactccagcc agcgacagtg 2940 cccagggctc tgatgtgtct ctcacagctt gaaaaggtga gattcttggg gtctagagtg 3000 ggcggggggg ggtggggtgg ggagggggca gaggggaaag gcctgggtaa tggagattct 3060 ttgactggga tgtttcgcgt gtgtggtggg ctgtttagag tgtcatcact taccatgact 3120 aaccagaatt tgttcatgac tgttgttttc tgtagcctga gacagctgtc ttgtgaggga 3180 ctgagatgca ggatttcttc actcctcccc tttgtgactt caagagcctc tggcatctct 3240 ttctgcaaag gcacctgaat gtgtctgcgt ccctgttagt ataatgtgag gaggtggaga 3300 gacagcccac ccccgtgtcc actgtgaccc ctgttcccat gctgacctgt gtttcctccc 3360 cagtcatctt tcctgttcca gaggggtggg gctggatgtc tccatctctg tctcaacttt 3420 atgtgcactg agctgcaact tcttacttcc ctactgaaaa taagaatctg aatataaatt 3480 tgttttctca aatatttgct atgagaggtt gatggattaa ttaaataagt caattcctgg 3540 aatgtgagag agcaaataaa gacctgagaa ctttccagaa tctgcatgtt cgctgtgctg 3600 agtctgttgc aggtggggtg tggagaaggc tgtggggggc cgagtgtgga cagggcctgt 3660 gcccagttgt tgttgagccc atcatgggct ttatgtggtt agtcctcagc tgggtcacct 3720 tcactgcccc attgtccttg tcccttcagc ggaaacttgt ccagtgggag ctgtgaccac 3780 agaggctcac acatcgccca gggtggcccc tgcacacggg ggtctctgtg cattctgaga 3840 caaattttca gagccattca cctcctgccc tgcttctaga gctccttttc tgctctgctc 3900 tcctgccctc tctccctgcc ctggttctag tgatcttggt gctgaatcca atcccaactc 3960 ctgaatctgt aaagcagagt ctaatttaga cttacatttg tctgtgaaat tggacccgtc 4020 atcaaggact gttctttcct gaagagagaa cctgattgtg tgctgcagtg tgctggggca 4080 gggggtgcgg 4090 //