Dbfetch
ID MT896400; SV 1; linear; genomic DNA; STD; HUM; 3497 BP. XX AC MT896400; XX DT 10-MAR-2021 (Rel. 144, Created) DT 10-MAR-2021 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens MHC class I antigen (HLA-H) pseudogene, HLA-H*01:02var allele, DE complete sequence. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3497 RA Stelet V.N., Cita R.F.; RT ; RL Submitted (13-AUG-2020) to the INSDC. RL Laboratorio de Imunogenetica, Instituto Nacional de Cancer, Via Binario do RL Porto, 831, Rio de Janeiro, Rio de Janeiro 20220410, Brasil XX DR MD5; 68b717a48f3226f8496e475f16dd336c. XX CC ##Assembly-Data-START## CC Assembly Method :: Alloseq Assign v. 1.0; NGSengine v. 2.18; CC HLA Twin v. 4.2 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3497 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>3497 FT /gene="HLA-H" FT /allele="HLA-H*01:02var" FT /pseudogene="unknown" FT exon <1..373 FT /gene="HLA-H" FT /allele="HLA-H*01:02var" FT /number=1 FT /pseudogene="unknown" FT 5'UTR <1..300 FT /gene="HLA-H" FT /allele="HLA-H*01:02var" FT CDS join(301..373,498..767,1009..1284,1870..2138) FT /codon_start=1 FT /gene="HLA-H" FT /allele="HLA-H*01:02var" FT /note="MHC class I antigen" FT /pseudogene="unknown" FT exon 498..767 FT /gene="HLA-H" FT /allele="HLA-H*01:02var" FT /number=2 FT /pseudogene="unknown" FT exon 1009..1284 FT /gene="HLA-H" FT /allele="HLA-H*01:02var" FT /number=3 FT /pseudogene="unknown" FT exon 1870..2144 FT /gene="HLA-H" FT /allele="HLA-H*01:02var" FT /number=4 FT /pseudogene="unknown" FT exon 2247..2363 FT /gene="HLA-H" FT /allele="HLA-H*01:02var" FT /number=5 FT /pseudogene="unknown" FT exon 2804..2836 FT /gene="HLA-H" FT /allele="HLA-H*01:02var" FT /number=6 FT /pseudogene="unknown" FT exon 2979..3025 FT /gene="HLA-H" FT /allele="HLA-H*01:02var" FT /number=7 FT /pseudogene="unknown" FT exon 3193..>3497 FT /gene="HLA-H" FT /allele="HLA-H*01:02var" FT /number=8 FT /pseudogene="unknown" FT 3'UTR 3198..>3497 FT /gene="HLA-H" FT /allele="HLA-H*01:02var" XX SQ Sequence 3497 BP; 676 A; 1009 C; 1059 G; 753 T; 0 other; gcacaggagg agcggggtca gggcgaagtc ccagggcccc aggcgtggct ctcagggtct 60 caggccccga aggcggtgta tggattgggg aggccccgcc ttggggattc gccacctccg 120 cagtttctct tcttctcaca acctgcgacg ggtccttttt cctggatact caggaagcgg 180 gcacagttct cattcccact aggtgtcggg tttctagaga agccaatcgg tgccgccgcg 240 gtcccggttc taaagtcccc acgcacccac cgggactcag attctcccca gacgccgagg 300 atggtgctca tggcgccccg aaccctcctc ctgctgctct caggggccct ggccctgacc 360 cagacctggg cgcgtgagtg cagggtctgc agggaaatgg tcgggaggag cgaggggccc 420 gcccggcggg ggcgcaggac ccagggagcc gcgcagggag gagggtcggg cgggtctcag 480 ctcctcctcg ctcccaggct cccactccat gaggtatttc tacaccacca tgtcccggcc 540 cggccgcggg gagccccgct tcatctccgt cggctacgtg gacgatacgc agttcgtgcg 600 gttcgacagc gacgccgcga gccagaggat ggagccgcgg gcgccgtgga tggagcggga 660 ggggccggag tattgggacc ggaacacaca gatctgcaag gcccaggcac agactgaacg 720 agagaacctg cggatcgcgc tcctctacta caaccagagc gagggcggtg agtgaccccg 780 gcccgggacg caggtcacga cccctcccca tcccccacgg agggccgggt cgcctcgagt 840 ctctgggtcc gagatcctcc ccgaaaccgc gggaccccga gacccttgac ctgggagagg 900 cccaggcgcc tttacccgtt tcattttcag tttaggccaa aatccccgcg ggttggtcgg 960 gacagggcgg ggctcggggg accgggctga ccgcgggggc ggggccaggt tctcacacca 1020 tgcaggtgat gtatggctgc gacgtggggc ccgacgggcg cttcctccgc gggtatgaac 1080 agcacgccta cgacggcaag gattacatcg ctctgaacga ggacctgcgc tcctggaccg 1140 cggcggacat ggcagctcag atcaccaagc gcaagtggga ggcggcccgt cgggcggagc 1200 agctgagagc ctacctggag ggcgagttcg tggagtggct ccgcagatac ctggagaacg 1260 ggaaggagac gctgcagcgc gcgggtacca ggggccacag ggcgcctccc ggatcgcctg 1320 tagatctccg gggctggcct cccacaagaa agggagacaa atgggaccaa cactataata 1380 tcgccctccc tctggtcctg agggagaaga atcctcctgg gtttccagag agtgactctg 1440 agggtccgcc gtgctctttg acacaattaa gggatgaaat ctctgaggaa atgaagggaa 1500 gacaatccct ggaatactga tgagtggttc cctttgacac tggcagcagc cttgggcccc 1560 gtgacttttc ctctcaggcc ttgttctctg cttcacactc aatgtgcctg ggggtctgag 1620 tccagctctt ctgagtccct cagcctccac tcaggtcagg accagaagtc gctgttccct 1680 cctcagggac tagaattttc cacggaatag gagattatcc caggtgcctg tgtccaggct 1740 gttgtctggg ttctgtgctc ccttccccac cccaggcgtc ctgtccattc tcaagatggc 1800 cacatgcgtg ctggtggagt gtcccatgac agatgcaaaa tgcctgaatt ttctgactct 1860 tcctgtcaga cccccccaag acacatatga cccaccaccc catctctgac catgaggcca 1920 ccctgaggtg ctgggccctg ggcttctacc ctgcggagat cacactgacc tggcagcggg 1980 atggggagga ccagacccac acacggagct cgtggagacc aggcctgcag gggatggaac 2040 cttccagaag tgggcggctg tggtggtgcc ttctggagag gagcagagat acacctgcca 2100 tgtgcagcat gagggtctgc cagagcccct caccctgaga tggggtaagg agggagatgg 2160 gggtgtcatg tcccttaggg aaagccggag cctctctgga gagctttagc agggtcaggg 2220 tccctcacct tcccctcttt tcccagagcc atcttcccag cccaccatcc ccatcgtggg 2280 catcgttgct ggcctggttc tacttgtagc tgtggtcact ggagctgtgg tcgctgctgt 2340 aatgtggagg aagaagagct caggtaagga aggggtgagg agtgtggtct gagatttctt 2400 gtctcactga gagttccaag ccccaggtag aagtgccctg cctggttact gggaagcacc 2460 atccacactc atgggcctac ccagcctggg ccctgtgtgc cagcacttac tcttttgtaa 2520 agcacctgtt acaatgaggg acagatttat caccttgatg actgtggtga tgggacctga 2580 tcccagcagt cacaagtcac aggggaaggt ccccgaggac agacctcaga agggcggttg 2640 gtccaggacc cacatctgct ttcctcatgt ttcctgatcc cgccctgggt ctgcagttgc 2700 acatttctgg aaacttctct ggggtccaag acttggaggt tcctctagga ccttatggcc 2760 ctggcttctt tctggcatct cacaggacat tttcttccca cagatagaaa aggagggagc 2820 tactctcagg ctgcaagtaa gtatgaagga ggctgatccc tgaaatcctt tggatattgt 2880 gtttgggagc ccatggggga gctcacccac cccacaattc ttcctctagc cacatctact 2940 gtgggatctg accaggtcct gtttttattc tactccaggc ggcaacagtg cccagggctc 3000 tgatgtgtct ctcacggcgt gaaaggtgag accttggggg gcctgatgtg tggggggtgt 3060 tgggggggaa cagtggacac agctgtgcta tggggttctt tgaatttgat gttttgagca 3120 tgcgatgggc tgccaaagtg tcatccatta ctgggacaga tatgaatttg ttcatgaata 3180 ttttttctat agtgtgagac agctgccttg tgtgggactg agaggcaaga tttgttcaca 3240 ccttcccttt gtgacttgaa gaaccctgac tttctgcaaa ggcacctgaa tgtgtctgtg 3300 ttcctgtagg cataatgtgt ggaggagggg agaccaaccc accctcatgt ccaccatgac 3360 cctcttcccc acgctgatct gtgttccctc cccaatcatc tttcctgttc cagagaggcg 3420 gggctgagat gtctccatct ttttctcaac tttatgtgca ctgagctgta acttcttact 3480 tccctcttaa aattaga 3497 //